CB417305

Overview
NameCB417305
Unique NameCB417305
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length328
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig377 contig Csv1_Contig377:1..328. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB417305 vs. ExPASy Swiss-Prot
Match: WRK48_ARATH (Probable WRKY transcription factor 48 OS=Arabidopsis thaliana GN=WRKY48 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.285e-26
Identity = 57/80 (71.25%), Postives = 67/80 (83.75%), Query Frame = 3
Query:    3 GQKAVKNSPHPRSYYRCTSAGCGVKKRVERSSEDPTIVVTTYEGQHIHPSPITPRGSIGIMAN---DHNSTATFGASSSF 233
            GQKAVKNSP+PRSYYRCT+ GCGVKKRVERSS+DP+IV+TTYEGQH HP P+TPRG IG++ +   DH   AT  +SSSF
Sbjct:  230 GQKAVKNSPYPRSYYRCTTVGCGVKKRVERSSDDPSIVMTTYEGQHTHPFPMTPRGHIGMLTSPILDHG--ATTASSSSF 307          
BLAST of CB417305 vs. ExPASy Swiss-Prot
Match: WRK28_ARATH (Probable WRKY transcription factor 28 OS=Arabidopsis thaliana GN=WRKY28 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.229e-20
Identity = 43/57 (75.44%), Postives = 48/57 (84.21%), Query Frame = 3
Query:    3 GQKAVKNSPHPRSYYRCTSAGCGVKKRVERSSEDPTIVVTTYEGQHIHPSPITPRGS 173
            GQKAVKNSP+PRSYYRCT+  C VKKRVERS +DPT+V+TTYEGQH HP P   RGS
Sbjct:  181 GQKAVKNSPYPRSYYRCTTQKCNVKKRVERSFQDPTVVITTYEGQHNHPIPTNLRGS 237          
BLAST of CB417305 vs. ExPASy Swiss-Prot
Match: WRKY8_ARATH (Probable WRKY transcription factor 8 OS=Arabidopsis thaliana GN=WRKY8 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.165e-19
Identity = 44/72 (61.11%), Postives = 56/72 (77.78%), Query Frame = 3
Query:    3 GQKAVKNSPHPRSYYRCTSAGCGVKKRVERSSEDPTIVVTTYEGQHIHPSPITPRGSI--GIMANDHNSTAT 212
            GQKAVKNSP+PRSYYRCT+  C VKKRVERS +DPT+V+TTYE QH HP P   R ++  G  A+D+N +++
Sbjct:  192 GQKAVKNSPYPRSYYRCTTQKCNVKKRVERSYQDPTVVITTYESQHNHPIPTNRRTAMFSGTTASDYNPSSS 263          
BLAST of CB417305 vs. ExPASy Swiss-Prot
Match: WRK71_ARATH (Probable WRKY transcription factor 71 OS=Arabidopsis thaliana GN=WRKY71 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.165e-19
Identity = 42/58 (72.41%), Postives = 50/58 (86.21%), Query Frame = 3
Query:    3 GQKAVKNSPHPRSYYRCTSAGCGVKKRVERSSEDPTIVVTTYEGQHIHPSPITPRGSI 176
            GQKAVKNSP+PRSYYRCT+  C VKKRVERS +DP+IV+TTYEG+H HP P T RG++
Sbjct:  145 GQKAVKNSPYPRSYYRCTTQKCNVKKRVERSFQDPSIVITTYEGKHNHPIPSTLRGTV 202          
BLAST of CB417305 vs. ExPASy Swiss-Prot
Match: WRK57_ARATH (Probable WRKY transcription factor 57 OS=Arabidopsis thaliana GN=WRKY57 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.165e-19
Identity = 45/69 (65.22%), Postives = 54/69 (78.26%), Query Frame = 3
Query:    3 GQKAVKNSPHPRSYYRCTSAGCGVKKRVERSSEDPTIVVTTYEGQHIHPSPITPRGSIGIMANDHNSTA 209
            GQKAVKNSP PRSYYRCT++ C VKKRVERSS+DP+IV+TTYEGQH H +   PRG I    + H+ T+
Sbjct:  156 GQKAVKNSPFPRSYYRCTNSRCTVKKRVERSSDDPSIVITTYEGQHCHQTIGFPRGGILTAHDPHSFTS 224          
BLAST of CB417305 vs. ExPASy Swiss-Prot
Match: WRK23_ARATH (Probable WRKY transcription factor 23 OS=Arabidopsis thaliana GN=WRKY23 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.389e-19
Identity = 43/55 (78.18%), Postives = 46/55 (83.64%), Query Frame = 3
Query:    3 GQKAVKNSPHPRSYYRCTSAGCGVKKRVERSSEDPTIVVTTYEGQHIHPSPITPR 167
            GQKAVKNSP PRSYYRCT+A C VKKRVERS  DP+ VVTTYEGQH H SP+T R
Sbjct:  183 GQKAVKNSPFPRSYYRCTTASCNVKKRVERSFRDPSTVVTTYEGQHTHISPLTSR 237          
BLAST of CB417305 vs. ExPASy Swiss-Prot
Match: WRK68_ARATH (Probable WRKY transcription factor 68 OS=Arabidopsis thaliana GN=WRKY68 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.056e-16
Identity = 41/78 (52.56%), Postives = 52/78 (66.67%), Query Frame = 3
Query:    3 GQKAVKNSPHPRSYYRCTSAGCGVKKRVERSSEDPTIVVTTYEGQHIHPSPITPRGSIGIMANDHNSTATFGASSSFV 236
            GQK VK+SP PR+YYRCT+  C VKKRVERS  DP+ V+TTYEGQH HP P+       IM  + +S +   AS + +
Sbjct:  127 GQKPVKDSPFPRNYYRCTTTWCDVKKRVERSFSDPSSVITTYEGQHTHPRPLL------IMPKEGSSPSNGSASRAHI 198          
BLAST of CB417305 vs. ExPASy Swiss-Prot
Match: WRKY3_ARATH (Probable WRKY transcription factor 3 OS=Arabidopsis thaliana GN=WRKY3 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.021e-15
Identity = 36/70 (51.43%), Postives = 49/70 (70.00%), Query Frame = 3
Query:    3 GQKAVKNSPHPRSYYRCTSAGCGVKKRVERSSEDPTIVVTTYEGQHIHPSPITPRGSIGIMANDHNSTAT 212
            GQK VK +P+PRSYY+CT+  CGV+K VER++ DP  VVTTYEG+H H  P     S  +  N+ ++T+T
Sbjct:  424 GQKVVKGNPYPRSYYKCTTPDCGVRKHVERAATDPKAVVTTYEGKHNHDVPAARTSSHQLRPNNQHNTST 493          
BLAST of CB417305 vs. ExPASy Swiss-Prot
Match: WRKY4_ARATH (Probable WRKY transcription factor 4 OS=Arabidopsis thaliana GN=WRKY4 PE=1 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 6.615e-15
Identity = 34/57 (59.65%), Postives = 42/57 (73.68%), Query Frame = 3
Query:    3 GQKAVKNSPHPRSYYRCTSAGCGVKKRVERSSEDPTIVVTTYEGQHIHPSPITPRGS 173
            GQK VK +P+PRSYY+CT+ GCGV+K VER++ DP  VVTTYEG+H H  P     S
Sbjct:  418 GQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLPAAKSSS 474          
BLAST of CB417305 vs. ExPASy Swiss-Prot
Match: WRKY1_ARATH (WRKY transcription factor 1 OS=Arabidopsis thaliana GN=WRKY1 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.639e-15
Identity = 34/51 (66.67%), Postives = 41/51 (80.39%), Query Frame = 3
Query:    3 GQKAVKNSPHPRSYYRCTSAGCGVKKRVERSSEDPTIVVTTYEGQHIHPSP 155
            GQK+VK SP+PRSYYRC+S GC VKK VERSS D  +++TTYEG+H H  P
Sbjct:  316 GQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMP 366          
The following BLAST results are available for this feature:
BLAST of CB417305 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 49
Match NameE-valueIdentityDescription
WRK48_ARATH1.285e-2671.25Probable WRKY transcription factor 48 OS=Arabidops... [more]
WRK28_ARATH5.229e-2075.44Probable WRKY transcription factor 28 OS=Arabidops... [more]
WRKY8_ARATH1.165e-1961.11Probable WRKY transcription factor 8 OS=Arabidopsi... [more]
WRK71_ARATH1.165e-1972.41Probable WRKY transcription factor 71 OS=Arabidops... [more]
WRK57_ARATH1.165e-1965.22Probable WRKY transcription factor 57 OS=Arabidops... [more]
WRK23_ARATH3.389e-1978.18Probable WRKY transcription factor 23 OS=Arabidops... [more]
WRK68_ARATH2.056e-1652.56Probable WRKY transcription factor 68 OS=Arabidops... [more]
WRKY3_ARATH1.021e-1551.43Probable WRKY transcription factor 3 OS=Arabidopsi... [more]
WRKY4_ARATH6.615e-1559.65Probable WRKY transcription factor 4 OS=Arabidopsi... [more]
WRKY1_ARATH8.639e-1566.67WRKY transcription factor 1 OS=Arabidopsis thalian... [more]

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Properties
Property NameValue
Genbank descriptionEST0381 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P026 similar to unknown Arabidopsis protein (acc# AAM14163), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB417305 ID=CB417305; Name=CB417305; organism=Citrus sinensis; type=EST; length=328bp
ACGGCCAAAAAGCTGTCAAAAATAGCCCCCATCCGAGAAGCTACTATCGT
TGCACTAGTGCCGGCTGCGGAGTGAAGAAGCGAGTGGAGAGATCATCTGA
AGACCCAACGATTGTTGTAACAACGTATGAAGGACAACACATACATCCAA
GCCCGATAACGCCTCGAGGGAGTATTGGAATCATGGCCAATGATCATAAT
TCGACTGCTACTTTTGGTGCTTCATCATCCTTTGTGATTCCGCAGCCTCA
ATATCTTCAACTACATCACCAACAGCAACCCTACATATATAGTTCATCGC
CTCCGTTGAATCTAATTACTTCTAATGC
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