CB417307

Overview
NameCB417307
Unique NameCB417307
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length394
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2750 contig Csv1_Contig2750:362..758. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB417307 vs. ExPASy Swiss-Prot
Match: SUI1_SPOST (Protein translation factor SUI1 homolog OS=Sporobolus stapfianus PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 7.919e-21
Identity = 46/48 (95.83%), Postives = 47/48 (97.92%), Query Frame = 2
Query:    2 EFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 145
            EFCCNGTVVQDPELGQVIQLQGDQRKNVS FLVQAGIVKKEHIK+HGF
Sbjct:   68 EFCCNGTVVQDPELGQVIQLQGDQRKNVSNFLVQAGIVKKEHIKIHGF 115          
BLAST of CB417307 vs. ExPASy Swiss-Prot
Match: SUI1_ORYSJ (Protein translation factor SUI1 homolog OS=Oryza sativa subsp. japonica GN=GOS2 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 7.919e-21
Identity = 46/48 (95.83%), Postives = 47/48 (97.92%), Query Frame = 2
Query:    2 EFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 145
            EFCCNGTVVQDPELGQVIQLQGDQRKNVS FLVQAGIVKKEHIK+HGF
Sbjct:   68 EFCCNGTVVQDPELGQVIQLQGDQRKNVSNFLVQAGIVKKEHIKIHGF 115          
BLAST of CB417307 vs. ExPASy Swiss-Prot
Match: SUI1_ORYSI (Protein translation factor SUI1 homolog OS=Oryza sativa subsp. indica GN=GOS2 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 7.919e-21
Identity = 46/48 (95.83%), Postives = 47/48 (97.92%), Query Frame = 2
Query:    2 EFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 145
            EFCCNGTVVQDPELGQVIQLQGDQRKNVS FLVQAGIVKKEHIK+HGF
Sbjct:   68 EFCCNGTVVQDPELGQVIQLQGDQRKNVSNFLVQAGIVKKEHIKIHGF 115          
BLAST of CB417307 vs. ExPASy Swiss-Prot
Match: SUI1_MAIZE (Protein translation factor SUI1 homolog OS=Zea mays GN=TIF PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 7.919e-21
Identity = 46/48 (95.83%), Postives = 47/48 (97.92%), Query Frame = 2
Query:    2 EFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 145
            EFCCNGTVVQDPELGQVIQLQGDQRKNVS FLVQAGIVKKEHIK+HGF
Sbjct:   68 EFCCNGTVVQDPELGQVIQLQGDQRKNVSNFLVQAGIVKKEHIKIHGF 115          
BLAST of CB417307 vs. ExPASy Swiss-Prot
Match: SUI1_SALBA (Protein translation factor SUI1 homolog OS=Salix bakko PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.930e-20
Identity = 45/48 (93.75%), Postives = 48/48 (100.00%), Query Frame = 2
Query:    2 EFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 145
            EFCCNGTVVQDPELGQVIQLQGDQRKNVS+FLVQAGIVKKE+IK+HGF
Sbjct:   66 EFCCNGTVVQDPELGQVIQLQGDQRKNVSSFLVQAGIVKKENIKIHGF 113          
BLAST of CB417307 vs. ExPASy Swiss-Prot
Match: SUI12_ARATH (Protein translation factor SUI1 homolog 2 OS=Arabidopsis thaliana GN=At1g54290 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.345e-19
Identity = 43/48 (89.58%), Postives = 47/48 (97.92%), Query Frame = 2
Query:    2 EFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 145
            EFCCNGTVVQD ELGQVIQLQGDQRKNVSTFLVQAG+VKK++IK+HGF
Sbjct:   66 EFCCNGTVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVKKDNIKIHGF 113          
BLAST of CB417307 vs. ExPASy Swiss-Prot
Match: SUI11_ARATH (Protein translation factor SUI1 homolog 1 OS=Arabidopsis thaliana GN=At4g27130 PE=2 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 4.345e-19
Identity = 43/48 (89.58%), Postives = 47/48 (97.92%), Query Frame = 2
Query:    2 EFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 145
            EFCCNGTVVQD ELGQVIQLQGDQRKNVSTFLVQAG+VKK++IK+HGF
Sbjct:   66 EFCCNGTVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVKKDNIKIHGF 113          
BLAST of CB417307 vs. ExPASy Swiss-Prot
Match: SUI1_BRAOL (Protein translation factor SUI1 homolog OS=Brassica oleracea PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.157e-18
Identity = 42/48 (87.50%), Postives = 46/48 (95.83%), Query Frame = 2
Query:    2 EFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 145
            EFCCNGTVVQD ELGQVIQLQGDQRKNVSTFLVQAG+VKK+ I++HGF
Sbjct:   66 EFCCNGTVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVKKDDIQIHGF 113          
BLAST of CB417307 vs. ExPASy Swiss-Prot
Match: SUI1_PIMBR (Protein translation factor SUI1 homolog OS=Pimpinella brachycarpa PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.873e-16
Identity = 38/46 (82.61%), Postives = 42/46 (91.30%), Query Frame = 2
Query:    8 CCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 145
            CCNGTVV D ELG+VIQLQGDQRKNVSTF+VQAGIVKK+ IK+H F
Sbjct:   68 CCNGTVVNDKELGKVIQLQGDQRKNVSTFIVQAGIVKKDQIKVHNF 113          
BLAST of CB417307 vs. ExPASy Swiss-Prot
Match: EIF1B_PIG (Eukaryotic translation initiation factor 1b OS=Sus scrofa GN=EIF1B PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.599e-13
Identity = 31/48 (64.58%), Postives = 41/48 (85.42%), Query Frame = 2
Query:    2 EFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 145
            +F CNGTV++ PE G+VIQLQGDQRKN+  FL++ GIVK+E +K+HGF
Sbjct:   66 KFACNGTVIEHPEYGEVIQLQGDQRKNICQFLLEVGIVKEEQLKVHGF 113          
The following BLAST results are available for this feature:
BLAST of CB417307 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
SUI1_SPOST7.919e-2195.83Protein translation factor SUI1 homolog OS=Sporobo... [more]
SUI1_ORYSJ7.919e-2195.83Protein translation factor SUI1 homolog OS=Oryza s... [more]
SUI1_ORYSI7.919e-2195.83Protein translation factor SUI1 homolog OS=Oryza s... [more]
SUI1_MAIZE7.919e-2195.83Protein translation factor SUI1 homolog OS=Zea may... [more]
SUI1_SALBA3.930e-2093.75Protein translation factor SUI1 homolog OS=Salix b... [more]
SUI12_ARATH4.345e-1989.58Protein translation factor SUI1 homolog 2 OS=Arabi... [more]
SUI11_ARATH4.345e-1989.58Protein translation factor SUI1 homolog 1 OS=Arabi... [more]
SUI1_BRAOL2.157e-1887.50Protein translation factor SUI1 homolog OS=Brassic... [more]
SUI1_PIMBR5.873e-1682.61Protein translation factor SUI1 homolog OS=Pimpine... [more]
EIF1B_PIG1.599e-1364.58Eukaryotic translation initiation factor 1b OS=Sus... [more]

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Properties
Property NameValue
Genbank descriptionEST0383 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P028 similar to SUI1, putative translation initiation factor (acc# CAD58628), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB417307 ID=CB417307; Name=CB417307; organism=Citrus sinensis; type=EST; length=394bp
GGAATTTTGCTGCAATGGAACAGTGGTCCAGGATCCTGAACTAGGACAGG
TCATTCAACTCCAAGGTGACCAGCGGAAGAATGTATCTACGTTCCTTGTT
CAGGCTGGGATTGTGAAGAAGGAACATATCAAAATGCATGGCTTTTAAGT
AAACAGCAACTTCCGTTTCTGCACATTTGGTGACCCGCGTTCGTCAGTGC
AGTGCAGAACATGCTATTGATACTATTAAAAAAAAAAAAATTTGTATGTG
GTGGTGCTGTTATATCATCTCCTGTGTTGGTTTAATATTGTTTTATCTGT
TTTTGTGCCACTGATGTTTCCTAGTTCTCGGTTTTATGTAATGTGGGATG
ATTATGGTTATGTGATGCAGTATAGTTTGCTCGTATGTTGTAAG
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