CB417308

Overview
NameCB417308
Unique NameCB417308
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length620
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13714 contig Csv1_Contig13714:413..1032. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB417308 vs. ExPASy Swiss-Prot
Match: HS181_ARATH (18.1 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 1.618e-49
Identity = 99/160 (61.88%), Postives = 117/160 (73.12%), Query Frame = 3
Query:   90 MSLIPSIFGGRRTNVFDPSSLDVWDPFDGFF--SSALTNVPSSDRETSQFANAIIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILKISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNVKMEQVKASMENGXXXXXXXXXXXXXXXXXAIEISG 563
            MSLIPSIFGGRR+NVFDP S D+WDPF+GFF  SSAL N  S+ R+ + F NA +DWKETP+AHVFKADLPGL+            +L+ISGERSKE EEKNDKWHRVER+SGKF+RRFRLP+N KME+VKA+MENG                 +I+ISG
Sbjct:    1 MSLIPSIFGGRRSNVFDPFSQDLWDPFEGFFTPSSALANA-STARDVAAFTNARVDWKETPEAHVFKADLPGLKKEEVKVEVEDKNVLQISGERSKENEEKNDKWHRVERASGKFMRRFRLPENAKMEEVKATMENGVLTVVVPKAPEKKPQVKSIDISG 159          
BLAST of CB417308 vs. ExPASy Swiss-Prot
Match: HSP17_ARATH (17.4 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP17.4A PE=1 SV=2)

HSP 1 Score: 195.282 bits (495), Expect = 2.113e-49
Identity = 94/158 (59.49%), Postives = 113/158 (71.52%), Query Frame = 3
Query:   90 MSLIPSIFGGRRTNVFDPSSLDVWDPFDGFFSSALTNVPSSDRETSQFANAIIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILKISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNVKMEQVKASMENGXXXXXXXXXXXXXXXXXAIEISG 563
            MSL+PS FGGRRTNVFDP SLDVWDPF+GF +  LTN P+ D   + F NA +DW+ETP+AHVFKAD+PGL+          G IL+ISGERS E EEK+D WHRVERSSGKF+RRFRLP+N K+E+VKASMENG                 +++ISG
Sbjct:    1 MSLVPSFFGGRRTNVFDPFSLDVWDPFEGFLTPGLTNAPAKD--VAAFTNAKVDWRETPEAHVFKADVPGLKKEEVKVEVEDGNILQISGERSSENEEKSDTWHRVERSSGKFMRRFRLPENAKVEEVKASMENGVLSVTVPKVQESKPEVKSVDISG 156          
BLAST of CB417308 vs. ExPASy Swiss-Prot
Match: HS17C_ARATH (17.6 kDa class I heat shock protein 3 OS=Arabidopsis thaliana GN=HSP17.6C PE=2 SV=2)

HSP 1 Score: 195.282 bits (495), Expect = 2.113e-49
Identity = 100/159 (62.89%), Postives = 114/159 (71.70%), Query Frame = 3
Query:   90 MSLIPSIFGGRRTNVFDPSSLDVWDPFDGFFS-SALTNVPSSDRETSQFANAIIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILKISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNVKMEQVKASMENGXXXXXXXXXXXXXXXXXAIEISG 563
            MSLIPSIFGGRRTNVFDP SLDV+DPF+GF + S L N P+ D   + F NA +DW+ETP+AHVFKADLPGLR          G IL+ISGERS E EEKNDKWHRVERSSGKF RRFRLP+N KME++KASMENG                 +I+ISG
Sbjct:    1 MSLIPSIFGGRRTNVFDPFSLDVFDPFEGFLTPSGLANAPAMD--VAAFTNAKVDWRETPEAHVFKADLPGLRKEEVKVEVEDGNILQISGERSNENEEKNDKWHRVERSSGKFTRRFRLPENAKMEEIKASMENGVLSVTVPKVPEKKPEVKSIDISG 157          
BLAST of CB417308 vs. ExPASy Swiss-Prot
Match: HSP11_DAUCA (17.8 kDa class I heat shock protein OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 7.514e-47
Identity = 93/158 (58.86%), Postives = 111/158 (70.25%), Query Frame = 3
Query:   90 MSLIPSIFGGRRTNVFDPSSLDVWDPFDGFFSSALTNVPSSDRETSQFANAIIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILKISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNVKMEQVKASMENGXXXXXXXXXXXXXXXXXAIEISG 563
            MS+IPS FGGRR+NVFDP SLDVWDPF  F     ++     +ET+ F N  IDWKETPQAHVFKADLPGL+          G++L+ISGER+KE+EEKNDKWHRVERSSGKFLRRFRLP+N K+++VKA+M NG                 AI+ISG
Sbjct:    1 MSIIPSFFGGRRSNVFDPFSLDVWDPFKDF-PLVTSSASEFGKETAAFVNTHIDWKETPQAHVFKADLPGLKKEEVKVELEEGKVLQISGERNKEKEEKNDKWHRVERSSGKFLRRFRLPENAKVDEVKAAMANGVVTVTVPKVEIKKPEVKAIDISG 157          
BLAST of CB417308 vs. ExPASy Swiss-Prot
Match: HSP16_SOYBN (18.5 kDa class I heat shock protein OS=Glycine max GN=HSP18.5-C PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 8.308e-46
Identity = 93/161 (57.76%), Postives = 111/161 (68.94%), Query Frame = 3
Query:   90 MSLIPSIFGGRRTNVFDPSSLDVWDPFDGF-FSSALTNV--PSSDRETSQFANAIIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILKISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNVKMEQVKASMENGXXXXXXXXXXXXXXXXXAIEISG 563
            MSLIP+ FGGRR NVFDP SLDVWDPF  F F + L++   P   RE S F +  +DWKETP+AHVFKAD+PGL+           ++L+ISGER+ E+E+KND WHRVERSSGKF+RRFRLP+N K+EQVKASMENG                 AIEISG
Sbjct:    1 MSLIPNFFGGRRNNVFDPFSLDVWDPFKDFPFPNTLSSASFPEFSRENSAFVSTRVDWKETPEAHVFKADIPGLKKEEVKVQIEDDKVLQISGERNVEKEDKNDTWHRVERSSGKFMRRFRLPENAKVEQVKASMENGVLTVTVPKEEVKKPDVKAIEISG 161          
BLAST of CB417308 vs. ExPASy Swiss-Prot
Match: HSP12_MEDSA (18.2 kDa class I heat shock protein OS=Medicago sativa GN=HSP18.2 PE=2 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 4.123e-45
Identity = 90/158 (56.96%), Postives = 108/158 (68.35%), Query Frame = 3
Query:   90 MSLIPSIFGGRRTNVFDPSSLDVWDPFDGFFSSALTNVPSSDRETSQFANAIIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILKISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNVKMEQVKASMENGXXXXXXXXXXXXXXXXXAIEISG 563
            MSLIPS FGGRR+NVFDP SLDVWDPF  F  +      S  RE S F +  +DWKETP+AHVFKADLPG++           R+L+ISGERS E+E+KND+WHR+ERSSGKF+RRFRLP+N KM+QVKA+MENG                  I+ISG
Sbjct:    1 MSLIPSFFGGRRSNVFDPFSLDVWDPFKDFPFNNSALSASFPRENSAFVSTRVDWKETPEAHVFKADLPGMKKEEVKVEIEDDRVLQISGERSVEKEDKNDQWHRLERSSGKFMRRFRLPENAKMDQVKAAMENGVLTVTVPKEEVKKPEVKTIDISG 158          
BLAST of CB417308 vs. ExPASy Swiss-Prot
Match: HSP13_SOYBN (17.5 kDa class I heat shock protein OS=Glycine max GN=HSP17.5-M PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 7.033e-45
Identity = 93/159 (58.49%), Postives = 109/159 (68.55%), Query Frame = 3
Query:   90 MSLIPSIFGGRRTNVFDPSSLDVWDPFDGFFSSALTNVPSS-DRETSQFANAIIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILKISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNVKMEQVKASMENGXXXXXXXXXXXXXXXXXAIEISG 563
            MSLIPSIFGGRR+NVFDP SLDVWDPF  F      + P+S   E S F N  +DWKETP+AHVF+AD+PGL+           R+L+ISGER+ E+E+KND WHRVERSSG F+RRFRLP+N K+EQVKASMENG                 AIEISG
Sbjct:    1 MSLIPSIFGGRRSNVFDPFSLDVWDPFKDF------HFPTSLSAENSAFVNTRVDWKETPEAHVFEADIPGLKKEEVKVQIEDDRVLQISGERNLEKEDKNDTWHRVERSSGNFMRRFRLPENAKVEQVKASMENGVLTVTVPKEEVKKPDVKAIEISG 153          
BLAST of CB417308 vs. ExPASy Swiss-Prot
Match: HSP11_PEA (18.1 kDa class I heat shock protein OS=Pisum sativum GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 7.033e-45
Identity = 92/158 (58.23%), Postives = 107/158 (67.72%), Query Frame = 3
Query:   90 MSLIPSIFGGRRTNVFDPSSLDVWDPFDGFFSSALTNVPSSDRETSQFANAIIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILKISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNVKMEQVKASMENGXXXXXXXXXXXXXXXXXAIEISG 563
            MSLIPS F GRR+NVFDP SLDVWDP   F  S  +   S  RE   F +  +DWKETP+AHVFKADLPGL+           R+L+ISGERS E+E+KND+WHRVERSSGKFLRRFRLP+N KM++VKASMENG                 +IEISG
Sbjct:    1 MSLIPSFFSGRRSNVFDPFSLDVWDPLKDFPFSNSSPSASFPRENPAFVSTRVDWKETPEAHVFKADLPGLKKEEVKVEVEDDRVLQISGERSVEKEDKNDEWHRVERSSGKFLRRFRLPENAKMDKVKASMENGVLTVTVPKEEIKKAEVKSIEISG 158          
BLAST of CB417308 vs. ExPASy Swiss-Prot
Match: HSP11_SOYBN (17.3 kDa class I heat shock protein OS=Glycine max GN=HSP17.3-B PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 5.954e-44
Identity = 91/159 (57.23%), Postives = 110/159 (69.18%), Query Frame = 3
Query:   90 MSLIPSIFGGRRTNVFDPSSLDVWDPFDGF-FSSALTNVPSSDRETSQFANAIIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILKISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNVKMEQVKASMENGXXXXXXXXXXXXXXXXXAIEISG 563
            MSLIPS FGGRR++VFDP SLDVWDPF  F F S+L+       E S F +  +DWKETP+AHVFKAD+PGL+          GR+L+ISGER+ E+E+KND WHRVERSSGK +RRFRLP+N K++QVKASMENG                 AI+ISG
Sbjct:    1 MSLIPSFFGGRRSSVFDPFSLDVWDPFKDFPFPSSLS------AENSAFVSTRVDWKETPEAHVFKADIPGLKKEEVKLEIQDGRVLQISGERNVEKEDKNDTWHRVERSSGKLVRRFRLPENAKVDQVKASMENGVLTVTVPKEEIKKPDVKAIDISG 153          
BLAST of CB417308 vs. ExPASy Swiss-Prot
Match: HSP14_SOYBN (17.5 kDa class I heat shock protein OS=Glycine max GN=HSP17.5-E PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 2.955e-43
Identity = 90/160 (56.25%), Postives = 107/160 (66.88%), Query Frame = 3
Query:   90 MSLIPSIFGGRRTNVFDPSSLDVWDPFDGFFSSALTNVPSSD--RETSQFANAIIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILKISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNVKMEQVKASMENGXXXXXXXXXXXXXXXXXAIEISG 563
            MSLIP  FGGRR+NVFDP SLD+WDPF  F      +VP+S    E S F +  +DWKETP+AHVFKAD+PGL+           R+L+ISGER+ E+E+KND WHRVERSSGKF RRFRLP+N K+ +VKASMENG                 AIEISG
Sbjct:    1 MSLIPGFFGGRRSNVFDPFSLDMWDPFKDF------HVPTSSVSAENSAFVSTRVDWKETPEAHVFKADIPGLKKEEVKVQIEDDRVLQISGERNVEKEDKNDTWHRVERSSGKFTRRFRLPENAKVNEVKASMENGVLTVTVPKEEVKKPDVKAIEISG 154          
The following BLAST results are available for this feature:
BLAST of CB417308 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
HS181_ARATH1.618e-4961.8818.1 kDa class I heat shock protein OS=Arabidopsis... [more]
HSP17_ARATH2.113e-4959.4917.4 kDa class I heat shock protein OS=Arabidopsis... [more]
HS17C_ARATH2.113e-4962.8917.6 kDa class I heat shock protein 3 OS=Arabidops... [more]
HSP11_DAUCA7.514e-4758.8617.8 kDa class I heat shock protein OS=Daucus caro... [more]
HSP16_SOYBN8.308e-4657.7618.5 kDa class I heat shock protein OS=Glycine max... [more]
HSP12_MEDSA4.123e-4556.9618.2 kDa class I heat shock protein OS=Medicago sa... [more]
HSP13_SOYBN7.033e-4558.4917.5 kDa class I heat shock protein OS=Glycine max... [more]
HSP11_PEA7.033e-4558.2318.1 kDa class I heat shock protein OS=Pisum sativ... [more]
HSP11_SOYBN5.954e-4457.2317.3 kDa class I heat shock protein OS=Glycine max... [more]
HSP14_SOYBN2.955e-4356.2517.5 kDa class I heat shock protein OS=Glycine max... [more]

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Properties
Property NameValue
Genbank descriptionEST0384 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P029 similar to LMW heat shock protein (acc# T46833), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB417308 ID=CB417308; Name=CB417308; organism=Citrus sinensis; type=EST; length=620bp
CTCCATTCTCATCCTGAAATTGATCAAAGCATTCAAGGAAAGATTACTCC
AACTCTTGAACATTTTCTTAGCTTCATAATTTTCCAATCATGTCACTCAT
TCCAAGCATCTTCGGCGGCCGAAGAACCAACGTGTTCGATCCATCTTCAC
TAGATGTGTGGGATCCTTTTGACGGGTTCTTCTCCTCTGCCCTTACCAAT
GTGCCGTCTTCGGATAGGGAAACATCCCAATTTGCCAATGCAATAATTGA
CTGGAAAGAGACTCCTCAGGCTCACGTATTCAAAGCTGATCTTCCAGGGC
TGAGGAAAGAAGAAGTGAAAGTTGAGGTTGAAGAGGGCAGGATTCTGAAG
ATAAGCGGAGAGAGGAGCAAGGAGCAAGAAGAGAAGAATGACAAGTGGCA
TCGCGTCGAGAGGAGCAGTGGCAAGTTCCTGAGGAGGTTCAGGTTGCCCG
ACAATGTTAAGATGGAACAGGTTAAGGCCAGCATGGAGAATGGTGTGCTC
ACAGTCACTGTTCCTAAAGAGGAGGAGAAGAAACCTGAAGTTAAGGCCAT
TGAGATCTCTGGCTAAGTGATAAATGTAAATGTTTTCAAGATTGTGTCTA
TGGTTTGCCAATAAATTTGG
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