CB417310

Overview
NameCB417310
Unique NameCB417310
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length322
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB417310 vs. ExPASy Swiss-Prot
Match: PDR1_TOBAC (Pleiotropic drug resistance protein 1 OS=Nicotiana tabacum GN=PDR1 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 6.838e-28
Identity = 64/107 (59.81%), Postives = 77/107 (71.96%), Query Frame = 1
Query:    4 SLR-RSASRWNTNSIGAFXXXXXXXXXXXALKWAALEKLPTYNRLRKGILTTSRGEANEVDVYNLGLQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVE 321
            SLR  S S W  N +  F           ALKWAALEKLPT++RLRKG+L  S+G A EVD+ +LG QER+ L+++LVKV D DNE+FLLKLKNRIDRVGIDLP +E
Sbjct:   21 SLRANSNSIWRNNGVEIFSRSSRDEDDEEALKWAALEKLPTFDRLRKGLLFGSQGAAAEVDINDLGFQERKNLLERLVKVADEDNEKFLLKLKNRIDRVGIDLPTIE 127          
BLAST of CB417310 vs. ExPASy Swiss-Prot
Match: TUR2_SPIPO (Pleiotropic drug resistance protein TUR2 OS=Spirodela polyrrhiza GN=TUR2 PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 2.200e-26
Identity = 61/107 (57.01%), Postives = 74/107 (69.16%), Query Frame = 1
Query:    4 SLRRSASRWNTNSIG-AFXXXXXXXXXXXALKWAALEKLPTYNRLRKGILTTSRGEANEVDVYNLGLQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVE 321
            SLRRS S W + S    F           ALKWAALEKLPTY+RLRKGI+T   GE  EVD+  LG QER+ L++KLV+  + DNERFLLKL+NR++RVGID P +E
Sbjct:   18 SLRRSVSAWRSPSTSDVFGRSSREEDDEEALKWAALEKLPTYDRLRKGIMTGDGGEIQEVDIQGLGFQERKNLLEKLVRNAEEDNERFLLKLRNRMERVGIDNPTIE 124          
BLAST of CB417310 vs. ExPASy Swiss-Prot
Match: PDR1_NICPL (Pleiotropic drug resistance protein 1 OS=Nicotiana plumbaginifolia GN=PDR1 PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 2.200e-26
Identity = 61/102 (59.80%), Postives = 71/102 (69.61%), Query Frame = 1
Query:   16 SASRWNTNSIGAFXXXXXXXXXXXALKWAALEKLPTYNRLRKGILTTSRGEANEVDVYNLGLQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVE 321
            S S W  N    F           ALKWAALEKLPTY+RLRKGIL  S+G A EVDV + G+ ER+ L+++LVKV D DNE+FLLKLKNRIDRVGID P +E
Sbjct:   30 SNSIWRNNGAEVFSRSARDEDDEEALKWAALEKLPTYDRLRKGILFGSQGAAAEVDVDDSGVLERKNLLERLVKVADEDNEKFLLKLKNRIDRVGIDFPSIE 131          
BLAST of CB417310 vs. ExPASy Swiss-Prot
Match: PDR7_ORYSJ (Putative pleiotropic drug resistance protein 7 OS=Oryza sativa subsp. japonica GN=PDR7 PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 4.587e-24
Identity = 59/108 (54.63%), Postives = 75/108 (69.44%), Query Frame = 1
Query:    4 SLRRSASRWNTNS--IGAFXXXXXXXXXXXALKWAALEKLPTYNRLRKGILTTSRGEANEVDVYNLGLQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVE 321
            S+RR+AS W   S    AF           ALKWAA+EKLPTY+R+RKGILT   G   EVD+  LGLQER+ LI++LV+  + DNERFLLKL++R++RVGID P +E
Sbjct:   15 SVRRTASSWRGTSGRSDAFGRSVREEDDEEALKWAAIEKLPTYDRMRKGILTA--GGVEEVDIGGLGLQERRNLIERLVRTAEEDNERFLLKLRDRMERVGIDNPTIE 120          
BLAST of CB417310 vs. ExPASy Swiss-Prot
Match: AB40G_ARATH (ABC transporter G family member 40 OS=Arabidopsis thaliana GN=ABCG40 PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.927e-22
Identity = 55/109 (50.46%), Postives = 75/109 (68.81%), Query Frame = 1
Query:    4 SLRRSASRWNTNS-IGAFXXXXXXXXXXXALKWAALEKLPTYNRLRKGILTTSR--GEANEVDVYNLGLQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVE 321
            S+RR++S W  +S    F           AL+WAALEKLPT++RLRKGILT S   G  NE+D+  LG Q+ ++L+++L+KV D ++E+ L KLK RIDRVGIDLP +E
Sbjct:   12 SMRRNSSVWKKDSGREIFSRSSREEDDEEALRWAALEKLPTFDRLRKGILTASHAGGPINEIDIQKLGFQDTKKLLERLIKVGDDEHEKLLWKLKKRIDRVGIDLPTIE 120          
BLAST of CB417310 vs. ExPASy Swiss-Prot
Match: PDR2_ORYSJ (Probable pleiotropic drug resistance protein 2 OS=Oryza sativa subsp. japonica GN=PDR2 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.854e-20
Identity = 57/120 (47.50%), Postives = 75/120 (62.50%), Query Frame = 1
Query:    1 TSLRRSASRWNTNSIGAFXXXXXXXXXXX------ALKWAALEKLPTYNRLRKGILTTSR-----GEANE--VDVYNLGLQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVE 321
            +S R +AS W +   G F                 AL+WAALEKLPTY+R+R+ +L         GEA +  VDV +LG QER+ L+++LV+V + DNERFLLKLK RIDRVGID+P +E
Sbjct:   20 SSSRGAASMWWSADNGVFSRSRASSSGEDGEDDEEALRWAALEKLPTYDRVRRAVLPVVEEGGGGGEAGKKVVDVLSLGPQERRALLERLVRVAEDDNERFLLKLKERIDRVGIDIPTIE 139          
BLAST of CB417310 vs. ExPASy Swiss-Prot
Match: PDR4_ORYSJ (Pleiotropic drug resistance protein 4 OS=Oryza sativa subsp. japonica GN=PDR4 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.527e-19
Identity = 54/115 (46.96%), Postives = 70/115 (60.87%), Query Frame = 1
Query:    4 SLRRSASRWNTNS---IGAFXXXXXXXXXXXALKWAALEKLPTYNRLRKGILTTSR------GEANEVDVYNLGLQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVE 321
            SLRR  S W +       +            AL+WAALE+LPTY+R+R+GIL  S       GE  EVDV  LG +E + LI++LV+  D D+ERFLLKL+ R+DRVGID P +E
Sbjct:   10 SLRREGSMWRSGGDVFSRSSSRFQDEDDDEEALRWAALERLPTYDRVRRGILAVSSEDGGAGGEKVEVDVGRLGARESRALIERLVRAADDDHERFLLKLRERMDRVGIDYPTIE 124          
BLAST of CB417310 vs. ExPASy Swiss-Prot
Match: PDR1_ORYSJ (Probable pleiotropic drug resistance protein 1 OS=Oryza sativa subsp. japonica GN=PDR1 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.994e-19
Identity = 49/89 (55.06%), Postives = 62/89 (69.66%), Query Frame = 1
Query:   88 ALKWAALEKLPTYNRLRKGILTTSRGEANE-----------VDVYNLGLQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVE 321
            AL+WAAL+KLPTY+R+R  IL    GE  E           VDV++LG  ER+ L+++LV+V D DNERFLLKLK RI RVGID+P +E
Sbjct:   56 ALRWAALQKLPTYDRVRAAILPMVEGEGGEAGGGGGGRRVVVDVHSLGPHERRALLERLVRVADDDNERFLLKLKERISRVGIDMPTIE 144          
BLAST of CB417310 vs. ExPASy Swiss-Prot
Match: PDR3_ORYSJ (Pleiotropic drug resistance protein 3 OS=Oryza sativa subsp. japonica GN=PDR3 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.605e-19
Identity = 47/85 (55.29%), Postives = 63/85 (74.12%), Query Frame = 1
Query:   88 ALKWAALEKLPTYNRLRKGILTTSR-------GEANEVDVYNLGLQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVE 321
            AL+WAALEKLPTY+R+R+ IL           G    VDV+ LG +ER+ L+++LV+V D DNE+FLLKLK+R+DRVGID+P +E
Sbjct:   46 ALRWAALEKLPTYDRVRRAILPLGGDDGAGDGGGKGVVDVHGLGPRERRALLERLVRVADEDNEKFLLKLKDRVDRVGIDMPTIE 130          
BLAST of CB417310 vs. ExPASy Swiss-Prot
Match: PDR3_ORYSI (Pleiotropic drug resistance protein 3 OS=Oryza sativa subsp. indica GN=PDR3 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.605e-19
Identity = 47/85 (55.29%), Postives = 63/85 (74.12%), Query Frame = 1
Query:   88 ALKWAALEKLPTYNRLRKGILTTSR-------GEANEVDVYNLGLQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVE 321
            AL+WAALEKLPTY+R+R+ IL           G    VDV+ LG +ER+ L+++LV+V D DNE+FLLKLK+R+DRVGID+P +E
Sbjct:   46 ALRWAALEKLPTYDRVRRAILPLGGDDGAGDGGGKGVVDVHGLGPRERRALLERLVRVADEDNEKFLLKLKDRVDRVGIDMPTIE 130          
The following BLAST results are available for this feature:
BLAST of CB417310 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
PDR1_TOBAC6.838e-2859.81Pleiotropic drug resistance protein 1 OS=Nicotiana... [more]
TUR2_SPIPO2.200e-2657.01Pleiotropic drug resistance protein TUR2 OS=Spirod... [more]
PDR1_NICPL2.200e-2659.80Pleiotropic drug resistance protein 1 OS=Nicotiana... [more]
PDR7_ORYSJ4.587e-2454.63Putative pleiotropic drug resistance protein 7 OS=... [more]
AB40G_ARATH1.927e-2250.46ABC transporter G family member 40 OS=Arabidopsis ... [more]
PDR2_ORYSJ6.854e-2047.50Probable pleiotropic drug resistance protein 2 OS=... [more]
PDR4_ORYSJ1.527e-1946.96Pleiotropic drug resistance protein 4 OS=Oryza sat... [more]
PDR1_ORYSJ1.994e-1955.06Probable pleiotropic drug resistance protein 1 OS=... [more]
PDR3_ORYSJ2.605e-1955.29Pleiotropic drug resistance protein 3 OS=Oryza sat... [more]
PDR3_ORYSI2.605e-1955.29Pleiotropic drug resistance protein 3 OS=Oryza sat... [more]

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Properties
Property NameValue
Genbank descriptionEST0386 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P031 similar to pleiotropic drug resistance-like protein (acc# BAB92011), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB417310 ID=CB417310; Name=CB417310; organism=Citrus sinensis; type=EST; length=322bp
ACTAGCTTGCGTCGGAGCGCTTCTAGATGGAACACAAATTCCATCGGTGC
ATTTTCGAGGTCTTCAAGGGAAGAAGACGATGAGGAGGCTCTAAAATGGG
CTGCTCTCGAGAAATTGCCTACCTATAACCGTTTGAGGAAGGGGATATTA
ACTACCTCACGAGGTGAAGCTAATGAAGTTGATGTTTACAACCTTGGGCT
GCAAGAAAGGCAGAGGTTGATTGATAAATTGGTTAAAGTTACTGATGTTG
ATAACGAGAGGTTCTTGTTGAAGCTCAAGAACCGTATTGATAGAGTTGGA
ATAGACCTTCCAAAAGTCGAAG
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