CB610480

Overview
NameCB610480
Unique NameCB610480
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length657
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2568 contig Csv1_Contig2568:136..792. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB610480 vs. ExPASy Swiss-Prot
Match: LEA5_CITSI (Late embryogenesis abundant protein Lea5 OS=Citrus sinensis GN=LEA5 PE=2 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.544e-48
Identity = 96/97 (98.97%), Postives = 97/97 (100.00%), Query Frame = 3
Query:  153 MARSLFKAKLLLAPVADGISLSISRRGYAAAAPLGTVSRTGIMEKNDLRPAVREDSGASSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRAH 443
            MARSLFKAKLLLAPVADGISLSISRRGYAAAAPLGT+SRTGIMEKNDLRPAVREDSGASSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRAH
Sbjct:    1 MARSLFKAKLLLAPVADGISLSISRRGYAAAAPLGTISRTGIMEKNDLRPAVREDSGASSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRAH 97          
BLAST of CB610480 vs. ExPASy Swiss-Prot
Match: LEA5D_GOSHI (Late embryogenesis abundant protein Lea5-D OS=Gossypium hirsutum GN=LEA5-D PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.901e-22
Identity = 58/104 (55.77%), Postives = 71/104 (68.27%), Query Frame = 3
Query:  153 MARSLFKAKLLLAPVADGISLSISRRGYAAAAPLGTVS---RTGIMEKNDLRPAVREDSGA-----SSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRA 440
            MARS+   KLL A + DG+ +SISRRGY+ A P    +   R G M K + R A++E S +     SSAWAPDP+TGYYRPEN   EID AELREMLLNH+VR+
Sbjct:    1 MARSVSSFKLLGASIFDGLYVSISRRGYSGAPPAAVTASFGRPGAMGKVERRDAMKESSSSETRAYSSAWAPDPVTGYYRPENCGAEIDAAELREMLLNHRVRS 104          
BLAST of CB610480 vs. ExPASy Swiss-Prot
Match: LEA5A_GOSHI (Late embryogenesis abundant protein Lea5-A OS=Gossypium hirsutum GN=LEA5-A PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.362e-20
Identity = 55/104 (52.88%), Postives = 69/104 (66.35%), Query Frame = 3
Query:  153 MARSLFKAKLLLAPVADGISLSISRRGYAAAAPLGTVS---RTGIMEKNDLRPAVREDSGA-----SSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRA 440
            MARS+   K L A V D + +SISRRGY+ A P    +   R G M K + R A++E S +     SSAWAPDP+TGYYRPEN   EID A+LREM+LNH+VR+
Sbjct:    1 MARSVSSFKFLGASVFDALYVSISRRGYSGAPPAAVTASFGRPGAMGKVERRYAMKESSSSETRAYSSAWAPDPVTGYYRPENCGAEIDAADLREMMLNHRVRS 104          
BLAST of CB610480 vs. ExPASy Swiss-Prot
Match: ARG2_PHAAU (Indole-3-acetic acid-induced protein ARG2 OS=Phaseolus aureus GN=ARG2 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.737e-11
Identity = 42/97 (43.30%), Postives = 56/97 (57.73%), Query Frame = 3
Query:  153 MARSLFKAKLLLAPVADGISLSISRRGYAAAAPLG-TVSRTGIMEKNDLRPAVREDS---GASSAWAPDPITGYYRPENRAVEIDPAELREMLLNHK 431
            MARS    K+L A VADG S + +R G+AAAA    + +R G     ++ P   E+    G   +W PDP+TGYYRPEN   EID A++R  +L  K
Sbjct:    1 MARSFTNVKVLSALVADGFSNTTTRHGFAAAAAATQSATRGGASIGGNMVPKSGEEKVRGGEKVSWVPDPVTGYYRPEN-TNEIDVADMRATVLGKK 96          
The following BLAST results are available for this feature:
BLAST of CB610480 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
LEA5_CITSI1.544e-4898.97Late embryogenesis abundant protein Lea5 OS=Citrus... [more]
LEA5D_GOSHI1.901e-2255.77Late embryogenesis abundant protein Lea5-D OS=Goss... [more]
LEA5A_GOSHI1.362e-2052.88Late embryogenesis abundant protein Lea5-A OS=Goss... [more]
ARG2_PHAAU5.737e-1143.30Indole-3-acetic acid-induced protein ARG2 OS=Phase... [more]
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Properties
Property NameValue
Genbank descriptionALBEDO0003_IaF_E07 Mature Albedo Citrus sinensis cDNA clone ALBEDO0003_IaF_E07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610480 ID=CB610480; Name=CB610480; organism=Citrus sinensis; type=EST; length=657bp
GGGGGACAAGCACAGCACAAAGAGAGCGAGCCGCTAGCTTTTGCCTATAG
CTACTGCAGGAGCAGAATCTTTCTTCTTCTGTAGTAGCACTGTACAGAAA
CATCCCAGCTAGCTATCTTCATATCTATTAAGTTCTATAAGTAAATAAAA
CAATGGCCCGCTCTCTCTTCAAAGCTAAGCTTCTTCTTGCTCCTGTTGCT
GATGGCATCTCGCTCTCCATTAGCAGGAGAGGATATGCTGCAGCAGCACC
CTTGGGGACCGTATCTCGGACTGGTATCATGGAGAAAAATGATTTGAGGC
CTGCGGTGAGAGAGGATTCTGGGGCCTCTTCTGCCTGGGCCCCAGATCCC
ATCACTGGGTACTACAGGCCGGAGAATCGGGCGGTCGAGATTGATCCAGC
AGAGCTTCGAGAGATGCTGTTGAACCACAAAGTCAGGGCACACTAGGGAG
TGGTGGCGCATAGCAGCAGATCCTTTGCTGTTAGCGGTGCTTTAACTTTT
TAAGTGACGTTGTTACAGTAGCAATTTTGACTCACTCTTAAGTCTTTGCT
GTTGTATTGATATCAACTGTTATTGACAACTTTTGATAGTGCATTTCCAT
GATTTTGTCTATTAACTTGTCAATAAAAGTAAAGAATTCCTGTATTACGA
GGAAAAA
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