CF417082

Overview
NameCF417082
Unique NameCF417082
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length682
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF417082_ssr68 microsatellite CF417082_ssr68:68..79. BLAST: Citrus ESTs to SwissProt
CF417082_ssr415 microsatellite CF417082_ssr415:415..426. BLAST: Citrus ESTs to SwissProt
Homology
BLAST of CF417082 vs. ExPASy Swiss-Prot
Match: COX3_AEDAE (Cytochrome c oxidase subunit 3 OS=Aedes aegypti GN=mt:CoIII PE=3 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 1.457e-13
Identity = 43/158 (27.22%), Postives = 58/158 (36.71%), Query Frame = 1
Query:  121 DIQRERTFQGNHTKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPNYEIGLI*PPLNIKSFXXXXXXXXXXXXXXRSGISVT*AHSRICFNNSIQTNKRXXXXXXXXXXX--FRFYNFMNI*LVHFASETQFTEERFFVTTGFHGIHVIIGTTF 588
            DI RE TFQG HT                                   P  E+G++ PP+ I+ F               SG++VT AH  +  NN  QT +               + Y ++      F          FFV TGFHG+HV+IGT+F
Sbjct:   61 DISREGTFQGLHTIPVTLGLRWGMILFIISEVFFFISFFWAFFHSSLSPTIELGMVWPPIGIEPFNPFQIPLLNTAILLASGVTVTWAHHSLMENNHTQTIQSLFFTVLLGIYFSILQAYEYIE---APFTIADNVYGSTFFVATGFHGLHVLIGTSF 215          

HSP 2 Score: 36.965 bits (84), Expect = 1.457e-13
Identity = 17/38 (44.74%), Postives = 20/38 (52.63%), Query Frame = 2
Query:  569 LLLELHFLTQVLMRLKIIHFSRKHHLGIEISI*YWHFV 682
            +L+   FL   L R    HFS  HH G E +  YWHFV
Sbjct:  209 VLIGTSFLLICLFRHMNCHFSSSHHFGFEAAAWYWHFV 246          
BLAST of CF417082 vs. ExPASy Swiss-Prot
Match: COX3_PELSU (Cytochrome c oxidase subunit 3 OS=Pelomedusa subrufa GN=MT-CO3 PE=3 SV=1)

HSP 1 Score: 54.299 bits (129), Expect = 2.586e-12
Identity = 43/156 (27.56%), Postives = 52/156 (33.33%), Query Frame = 1
Query:  121 DIQRERTFQGNHTKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPNYEIGLI*PPLNIKSFXXXXXXXXXXXXXXRSGISVT*AHSRICFNNSIQTNKRXXXXXXXXXXXFRFYNFMNI*LVHFASETQFTEERFFVTTGFHGIHVIIGTTF 588
            DI RE TFQG+HT                                   P  E+G I PP  I                  SG+++T AH  +   N  QT  +           F     M      F          FFV TGFHG+HVIIG+TF
Sbjct:   60 DIVRESTFQGHHTPSVQNNLRYGMILFITSEILFFTGFFWAFYHSSLSPTAELGNIWPPTGITPLNPFEVPLLNTAVLLASGVTITWAHHSLMEGNRPQT-LQALTLTIILGTYFTILQAMEYFEASFTIADSIYGSTFFVATGFHGLHVIIGSTF 214          

HSP 2 Score: 36.5798 bits (83), Expect = 2.586e-12
Identity = 16/32 (50.00%), Postives = 18/32 (56.25%), Query Frame = 2
Query:  587 FLTQVLMRLKIIHFSRKHHLGIEISI*YWHFV 682
            FL   LMR    HF+  HH G E +  YWHFV
Sbjct:  214 FLIVCLMRQLKYHFTSHHHFGFEAAAWYWHFV 245          
BLAST of CF417082 vs. ExPASy Swiss-Prot
Match: COX3_APILI (Cytochrome c oxidase subunit 3 OS=Apis mellifera ligustica GN=COIII PE=3 SV=1)

HSP 1 Score: 53.1434 bits (126), Expect = 2.587e-12
Identity = 41/156 (26.28%), Postives = 54/156 (34.62%), Query Frame = 1
Query:  121 DIQRERTFQGNHTKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPNYEIGLI*PPLNIKSFXXXXXXXXXXXXXXRSGISVT*AHSRICFNNSIQTNKRXXXXXXXXXXXFRFYNFMNI*LVHFASETQFTEERFFVTTGFHGIHVIIGTTF 588
            DI RE TFQG H+                                   PN EI +  PP NIK F               SG +VT +H  +  NN ++ +K            F     +      F          FF+ TGFHG+HV+IG+ F
Sbjct:   59 DIIRESTFQGMHSMFITNFLKFSMILFILSELMFFISFFWTFFHSSISPNIEINMTWPPKNIKFFNPMEIPLLNSFILVSSGFTVTLSHYYLIINN-LKLSKSYLLLTILLGIYFTILQTIEYSNSFFCFNDSIYGSIFFMATGFHGLHVLIGSIF 213          

HSP 2 Score: 37.7354 bits (86), Expect = 2.587e-12
Identity = 16/32 (50.00%), Postives = 21/32 (65.62%), Query Frame = 2
Query:  587 FLTQVLMRLKIIHFSRKHHLGIEISI*YWHFV 682
            FL   L R+  IHFS  H++  E++I YWHFV
Sbjct:  213 FLLISLYRMMNIHFSNMHNMNFELAIWYWHFV 244          
BLAST of CF417082 vs. ExPASy Swiss-Prot
Match: COX3_LOCMI (Cytochrome c oxidase subunit 3 OS=Locusta migratoria GN=COIII PE=3 SV=1)

HSP 1 Score: 55.0694 bits (131), Expect = 5.661e-12
Identity = 43/156 (27.56%), Postives = 53/156 (33.97%), Query Frame = 1
Query:  121 DIQRERTFQGNHTKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPNYEIGLI*PPLNIKSFXXXXXXXXXXXXXXRSGISVT*AHSRICFNNSIQTNKRXXXXXXXXXXXFRFYNFMNI*LVHFASETQFTEERFFVTTGFHGIHVIIGTTF 588
            D+ RE TFQG HTK                                  P  E+G+  PP+ I+ F               SG+++T AH  I   N  Q   +           F            F          FFV TGFHG+HVIIGTTF
Sbjct:   62 DVVREGTFQGLHTKLVSKGLRWGMILFIASEVLFFASFFWAFFNSSLAPTIELGMKWPPMGIQPFNPIQIPLLNTAILLASGVTITWAHHSIMECNHSQA-LQGLFFTVMLGFYFTLLQMYEYWEAPFTIADAVYGSTFFVATGFHGLHVIIGTTF 216          

HSP 2 Score: 34.6538 bits (78), Expect = 5.661e-12
Identity = 15/32 (46.88%), Postives = 18/32 (56.25%), Query Frame = 2
Query:  587 FLTQVLMRLKIIHFSRKHHLGIEISI*YWHFV 682
            FL   L+R  +  FS  HH G E +  YWHFV
Sbjct:  216 FLLTCLIRHMMNQFSSNHHFGFEAAAWYWHFV 247          
BLAST of CF417082 vs. ExPASy Swiss-Prot
Match: COX3_ORNAN (Cytochrome c oxidase subunit 3 OS=Ornithorhynchus anatinus GN=MT-CO3 PE=3 SV=1)

HSP 1 Score: 51.6026 bits (122), Expect = 5.663e-12
Identity = 43/156 (27.56%), Postives = 51/156 (32.69%), Query Frame = 1
Query:  121 DIQRERTFQGNHTKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPNYEIGLI*PPLNIKSFXXXXXXXXXXXXXXRSGISVT*AHSRICFNNSIQTNKRXXXXXXXXXXXFRFYNFMNI*LVHFASETQFTEERFFVTTGFHGIHVIIGTTF 588
            DI RE T+QG+HTK                                  P  E+G   PP  I                  SG+S+T AH  +   N  Q   +           F     M      F          FFV TGFHG+HVIIGTTF
Sbjct:   60 DIVREGTYQGHHTKIVQKGLRYGMILFIISEVFFFLGFFWAFYHSSLAPTPELGGCWPPTGISPLNPLEVPLLNTSILLASGVSITWAHHSLMEGNRKQM-LQALTITIALGLYFTALQAMEYYEASFTISDGVYGSTFFVATGFHGLHVIIGTTF 214          

HSP 2 Score: 38.1206 bits (87), Expect = 5.663e-12
Identity = 15/32 (46.88%), Postives = 19/32 (59.38%), Query Frame = 2
Query:  587 FLTQVLMRLKIIHFSRKHHLGIEISI*YWHFV 682
            FL   L+R  + HF+  HH G E +  YWHFV
Sbjct:  214 FLITCLVRQTLYHFTSNHHFGFEAAAWYWHFV 245          
BLAST of CF417082 vs. ExPASy Swiss-Prot
Match: COX3_PETMA (Cytochrome c oxidase subunit 3 OS=Petromyzon marinus GN=MT-CO3 PE=3 SV=1)

HSP 1 Score: 51.6026 bits (122), Expect = 7.354e-12
Identity = 43/156 (27.56%), Postives = 50/156 (32.05%), Query Frame = 1
Query:  121 DIQRERTFQGNHTKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPNYEIGLI*PPLNIKSFXXXXXXXXXXXXXXRSGISVT*AHSRICFNNSIQTNKRXXXXXXXXXXXFRFYNFMNI*LVHFASETQFTEERFFVTTGFHGIHVIIGTTF 588
            DI RE TF G+HT                                   P  E+GL  PP  I                  SG+SVT AH  I   N  +T +            F     M      F          FFV TGFHG+HVIIG+ F
Sbjct:   60 DIVREGTFLGHHTSPVQQGLRYGMILFIISEVCFFAGFFWAFYHASLAPTPELGLTWPPTGINPLNPFEVPLLNTAVLLASGVSVTWAHHSITEKNRTETTQALTLTVLLGLY-FTALQIMEYYETPFTMADGVYGSTFFVATGFHGLHVIIGSLF 214          

HSP 2 Score: 37.7354 bits (86), Expect = 7.354e-12
Identity = 16/32 (50.00%), Postives = 19/32 (59.38%), Query Frame = 2
Query:  587 FLTQVLMRLKIIHFSRKHHLGIEISI*YWHFV 682
            FL   L+R    HF+ KHH G E +  YWHFV
Sbjct:  214 FLLTCLLRHLQYHFTSKHHFGFEAAAWYWHFV 245          
BLAST of CF417082 vs. ExPASy Swiss-Prot
Match: COX3_COTJA (Cytochrome c oxidase subunit 3 OS=Coturnix coturnix japonica GN=MT-CO3 PE=3 SV=1)

HSP 1 Score: 48.9062 bits (115), Expect = 9.549e-12
Identity = 42/156 (26.92%), Postives = 51/156 (32.69%), Query Frame = 1
Query:  121 DIQRERTFQGNHTKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPNYEIGLI*PPLNIKSFXXXXXXXXXXXXXXRSGISVT*AHSRICFNNSIQTNKRXXXXXXXXXXXFRFYNFMNI*LVHFASETQFTEERFFVTTGFHGIHVIIGTTF 588
            D+ RE TFQG+HT                                   P  E+G   PP  IK                 SG++VT AH  I   N  Q               F     M      F+         FFV TGFHG+HVIIG++F
Sbjct:   60 DVVRESTFQGHHTPTVQKGLRYGMILFITSEAFFFLGFFWAFFHSSLAPTPELGGQWPPTGIKPLNPLEVPLLNTAILLASGVTVTWAHHSITEGNRKQAI-HALTLTILLGFYFTALQAMEYHEASFSIADSVYGSTFFVATGFHGLHVIIGSSF 214          

HSP 2 Score: 40.0466 bits (92), Expect = 9.549e-12
Identity = 17/32 (53.12%), Postives = 20/32 (62.50%), Query Frame = 2
Query:  587 FLTQVLMRLKIIHFSRKHHLGIEISI*YWHFV 682
            FLT  L+RL   HF+  HH G E +  YWHFV
Sbjct:  214 FLTICLLRLIKFHFTSNHHFGFEAAAWYWHFV 245          
BLAST of CF417082 vs. ExPASy Swiss-Prot
Match: COX3_STRCA (Cytochrome c oxidase subunit 3 OS=Struthio camelus GN=MT-CO3 PE=3 SV=2)

HSP 1 Score: 48.521 bits (114), Expect = 9.549e-12
Identity = 42/160 (26.25%), Postives = 54/160 (33.75%), Query Frame = 1
Query:  121 DIQRERTFQGNHTKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPNYEIGLI*PPLNIKSFXXXXXXXXXXXXXXRSGISVT*AHSRICFNNSIQTNKRXXXXXXXXXXXFRFY----NFMNI*LVHFASETQFTEERFFVTTGFHGIHVIIGTTF 588
            DI RE TFQG+HT                                   P  E+G   PP  I                  SG++VT AH  I      ++N++             FY      M      F+         FFV TGFHG+HVIIG++F
Sbjct:   60 DIVRESTFQGHHTPTVQKGLRYGMILFITSEAFFFLGFFWAFFHSSLAPTPELGAQWPPTGINPLNPLEVPLLNTAILLASGVTVTWAHHSIT-----ESNRKQAIHALSLTIILGFYFTALQAMEYHEASFSIADGVYGSTFFVATGFHGLHVIIGSSF 214          

HSP 2 Score: 40.4318 bits (93), Expect = 9.549e-12
Identity = 17/32 (53.12%), Postives = 20/32 (62.50%), Query Frame = 2
Query:  587 FLTQVLMRLKIIHFSRKHHLGIEISI*YWHFV 682
            FLT  L+RL   HF+  HH G E +  YWHFV
Sbjct:  214 FLTVCLLRLIKFHFTTNHHFGFEAAAWYWHFV 245          
BLAST of CF417082 vs. ExPASy Swiss-Prot
Match: COX3_CHICK (Cytochrome c oxidase subunit 3 OS=Gallus gallus GN=MT-CO3 PE=3 SV=1)

HSP 1 Score: 48.521 bits (114), Expect = 1.240e-11
Identity = 41/156 (26.28%), Postives = 51/156 (32.69%), Query Frame = 1
Query:  121 DIQRERTFQGNHTKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPNYEIGLI*PPLNIKSFXXXXXXXXXXXXXXRSGISVT*AHSRICFNNSIQTNKRXXXXXXXXXXXFRFYNFMNI*LVHFASETQFTEERFFVTTGFHGIHVIIGTTF 588
            D+ RE TFQG+HT                                   P  E+G   PP  +K                 SG++VT AH  I   N  Q               F     M      F+         FFV TGFHG+HVIIG++F
Sbjct:   60 DVVRESTFQGHHTPTVQKGLRYGMILFITSEAFFFLGFFWAFFHSSLAPTPELGGQWPPTGVKPLNPLEVPLLNTAILLASGVTVTWAHHSITEGNRKQAI-HALTLTILLGFYFTALQAMEYHEASFSIADSVYGSTFFVATGFHGLHVIIGSSF 214          

HSP 2 Score: 40.0466 bits (92), Expect = 1.240e-11
Identity = 17/32 (53.12%), Postives = 20/32 (62.50%), Query Frame = 2
Query:  587 FLTQVLMRLKIIHFSRKHHLGIEISI*YWHFV 682
            FLT  L+RL   HF+  HH G E +  YWHFV
Sbjct:  214 FLTVCLLRLIKFHFTPNHHFGFEAAAWYWHFV 245          
BLAST of CF417082 vs. ExPASy Swiss-Prot
Match: COX3_GORGO (Cytochrome c oxidase subunit 3 OS=Gorilla gorilla gorilla GN=MT-CO3 PE=3 SV=1)

HSP 1 Score: 47.3654 bits (111), Expect = 1.240e-11
Identity = 39/156 (25.00%), Postives = 50/156 (32.05%), Query Frame = 1
Query:  121 DIQRERTFQGNHTKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPNYEIGLI*PPLNIKSFXXXXXXXXXXXXXXRSGISVT*AHSRICFNNSIQTNKRXXXXXXXXXXXFRFYNFMNI*LVHFASETQFTEERFFVTTGFHGIHVIIGTTF 588
            D+ RE T+QG+HT                                   P  ++G   PP  I                  SG+S+T AH  +  NN  Q  +            F            F          FFV TGFHG+HVIIG+TF
Sbjct:   60 DVMRESTYQGHHTLPVQKGLRYGMILFITSEVFFFAGFFWAFYHSSLAPTPQLGAHWPPTGITPLNPLEVPLLNTSVLLASGVSITWAHHSLMENNRNQMIQALLITILLGLY-FTLLQASEYFEAPFTISDGIYGSTFFVATGFHGLHVIIGSTF 214          

HSP 2 Score: 41.2022 bits (95), Expect = 1.240e-11
Identity = 17/32 (53.12%), Postives = 21/32 (65.62%), Query Frame = 2
Query:  587 FLTQVLMRLKIIHFSRKHHLGIEISI*YWHFV 682
            FLT  L+R  + HF+ KHH G E +  YWHFV
Sbjct:  214 FLTICLIRQLMFHFTSKHHFGFEAAAWYWHFV 245          
The following BLAST results are available for this feature:
BLAST of CF417082 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
COX3_AEDAE1.457e-1327.22Cytochrome c oxidase subunit 3 OS=Aedes aegypti GN... [more]
COX3_PELSU2.586e-1227.56Cytochrome c oxidase subunit 3 OS=Pelomedusa subru... [more]
COX3_APILI2.587e-1226.28Cytochrome c oxidase subunit 3 OS=Apis mellifera l... [more]
COX3_LOCMI5.661e-1227.56Cytochrome c oxidase subunit 3 OS=Locusta migrator... [more]
COX3_ORNAN5.663e-1227.56Cytochrome c oxidase subunit 3 OS=Ornithorhynchus ... [more]
COX3_PETMA7.354e-1227.56Cytochrome c oxidase subunit 3 OS=Petromyzon marin... [more]
COX3_COTJA9.549e-1226.92Cytochrome c oxidase subunit 3 OS=Coturnix coturni... [more]
COX3_STRCA9.549e-1226.25Cytochrome c oxidase subunit 3 OS=Struthio camelus... [more]
COX3_CHICK1.240e-1126.28Cytochrome c oxidase subunit 3 OS=Gallus gallus GN... [more]
COX3_GORGO1.240e-1125.00Cytochrome c oxidase subunit 3 OS=Gorilla gorilla ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-012 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-001_B3 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417082 ID=CF417082; Name=CF417082; organism=Citrus sinensis; type=EST; length=682bp
ATTTCCTTTTCTATTCTTAATCTTACACTATTTAACGTTTTATTTTTCAA
TATTAAAAAAACTTTTTTAATAATAATAAGAATAATTATAACAACACTAA
TTATATTTTTATGATGACGAGACATCCAACGAGAAAGAACATTCCAAGGA
AACCACACAAAAATAGTTATAATTTCAATAAAATATGGAATAATTCTATT
TATTAGATCCGAAATTCTGTTTTTCTTTAGATTCTTCTGAAGATTTTTTC
ACCACAGACTCTCCCCTAATTATGAAATAGGACTTATATGACCTCCTCTT
AATATTAAATCATTTAACCCCATAAATATTCCTCTTATAAATACAATCAT
TTTATTAAGATCAGGAATTTCAGTTACATGAGCACACTCAAGAATATGTT
TTAATAATTCTATTCAAACAAACAAAAGAATTCTAATTACAATTATACTA
GGGATTATTGGTTTTCGATTTTACAATTTTATGAATATATAACTTGTCCA
TTTTGCATCAGAGACTCAGTTTACGGAAGAAAGATTCTTTGTCACAACAG
GATTTCACGGAATTCATGTTATTATTGGAACTACATTTTCTCACTCAAGT
TCTCATGCGACTAAAAATAATACACTTTTCTAGAAAACACCATTTAGGGA
TAGAAATATCTATTTGATATTGGCACTTTGTA
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