CF417089

Overview
NameCF417089
Unique NameCF417089
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length680
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF417089_ssr242 microsatellite CF417089_ssr242:242..251. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig415 contig Csv1_Contig415:1..668. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417089 vs. ExPASy Swiss-Prot
Match: Y4844_ARATH (Uncharacterized protein At4g28440 OS=Arabidopsis thaliana GN=At4g28440 PE=1 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.900e-37
Identity = 80/129 (62.02%), Postives = 92/129 (71.32%), Query Frame = 3
Query:   87 AMATAGATAKRKPVFIKVDQLKPGTTGHTLTVKVVSSKPVQVNKPRGAXXXXXXXXXXXXXXIAECLVGDDTGAIYFTARNDQVDIMTPGTTVILRNAKIDMFKGSMRLAVDKWGRIEVTEPADFEVKE 473
            A+AT  +T KRKPVF+KV+QLKPGTTGHTLTVKV+ +  V V   R                I ECL+GD+TG I FTARNDQVD+M PG TVILRN++IDMFKG+MRL VDKWGRIE T  A F VKE
Sbjct:    8 AVATGTSTVKRKPVFVKVEQLKPGTTGHTLTVKVIEANIV-VPVTRKTRPASSLSRPSQPSRIVECLIGDETGCILFTARNDQVDLMKPGATVILRNSRIDMFKGTMRLGVDKWGRIEATGAASFTVKE 135          
The following BLAST results are available for this feature:
BLAST of CF417089 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y4844_ARATH2.900e-3762.02Uncharacterized protein At4g28440 OS=Arabidopsis t... [more]
back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-019 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-001_B11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417089 ID=CF417089; Name=CF417089; organism=Citrus sinensis; type=EST; length=680bp
TTTGGTGCGCCCCCCCATTAGTCGCTGCTTCGATTCTCATTCGCTCACAA
ATCCTATACCTAGACCTAGTATTCGGGTTCTTTGTTGCGATGGCGACGGC
GGGTGCGACGGCAAAGAGGAAGCCGGTCTTTATTAAGGTCGATCAGCTCA
AGCCAGGAACCACCGGCCACACGCTGACCGTCAAGGTGGTGTCATCGAAG
CCCGTGCAGGTCAACAAGCCACGTGGCGCAAGGTCATTGTCCTCTCTCTC
TCAGCCTTCTCGACCACCTCGCATCGCCGAGTGCCTCGTCGGCGACGACA
CCGGTGCCATCTACTTCACTGCCCGCAACGACCAAGTTGATATTATGACG
CCGGGCACCACTGTGATTCTACGTAATGCTAAGATTGATATGTTCAAGGG
CTCAATGAGGCTAGCAGTCGACAAATGGGGACGCATTGAAGTCACCGAAC
CTGCTGACTTTGAAGTTAAAGAGAGTAACAATCTTTCTTTAGTTGAGTAT
GAGTTAGTTAATGTGGAGTGATTGGTATCATTTGGGAGGTGAATATTTGT
AGGTTAGTATTTCTGGAGGNTCGATTCTTCTTGTTCCCGTCAAACTGTTA
ACTGGGATCCAGTTTTTATGGATGGGGGTACAAAGATCTTGCTTATATGG
TTTTTCCAGCTTTGATATCAATGTGATGAT
back to top