CF417094

Overview
NameCF417094
Unique NameCF417094
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length584
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF417094_ssr461 microsatellite CF417094_ssr461:461..472. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UBC20_ARATH (Ubiquitin carrier protein E2 20 OS=Arabidopsis thaliana GN=UBC20 PE=2 SV=1)

HSP 1 Score: 261.536 bits (667), Expect = 2.128e-69
Identity = 124/132 (93.94%), Postives = 126/132 (95.45%), Query Frame = 1
Query:    1 MSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLWSNQEEYRKMVEKLYKPPSA 396
            M G  GISAFPEEDNIFCWKGTI GSKDTVFEGTEYRLSLSF NDYPFKPPKVKFET CFHPNVD+YGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLN+QAAQLWSNQEEYRKMVEKLYKPPSA
Sbjct:   49 MGGGPGISAFPEEDNIFCWKGTITGSKDTVFEGTEYRLSLSFSNDYPFKPPKVKFETCCFHPNVDVYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNTQAAQLWSNQEEYRKMVEKLYKPPSA 180          
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UBC19_ARATH (Ubiquitin carrier protein E2 19 OS=Arabidopsis thaliana GN=UBC19 PE=1 SV=1)

HSP 1 Score: 252.292 bits (643), Expect = 1.291e-66
Identity = 120/132 (90.91%), Postives = 124/132 (93.94%), Query Frame = 1
Query:    1 MSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLWSNQEEYRKMVEKLYKPPSA 396
            M  D GISAFPEEDNIFCWKGTI GSKDTVFEGTEYRLSL+F NDYPFK PKVKFET CFHPNVD+YGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLN+QAAQLWSNQEEYRKMVEKLYKP +A
Sbjct:   50 MGADPGISAFPEEDNIFCWKGTITGSKDTVFEGTEYRLSLTFSNDYPFKSPKVKFETCCFHPNVDLYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNNQAAQLWSNQEEYRKMVEKLYKPLNA 181          
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UBE2C_DICDI (Probable ubiquitin-conjugating enzyme E2 C OS=Dictyostelium discoideum GN=ube2c PE=3 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 9.297e-49
Identity = 88/128 (68.75%), Postives = 106/128 (82.81%), Query Frame = 1
Query:    1 MSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLWSNQEEYRKMVEKLYK 384
            M    GISAFP+ DNIF W GTIQG+KDTV+E  E+++SL FP DYP+KPP VKFET CFHPNVD  GNICLDIL+DKWS  Y+VR++L+SIQSLLGEPN  SPLNS AA LWSNQ+EY+K+++K Y+
Sbjct:   20 MGPSPGISAFPDGDNIFNWIGTIQGAKDTVYEQMEFKMSLKFPTDYPYKPPTVKFETQCFHPNVDNNGNICLDILKDKWSPVYNVRSLLISIQSLLGEPNNESPLNSYAASLWSNQDEYKKVLDKRYQ 147          
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UBE2C_SPISO (Ubiquitin-conjugating enzyme E2 C OS=Spisula solidissima GN=UBE2C PE=1 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 2.290e-47
Identity = 83/128 (64.84%), Postives = 107/128 (83.59%), Query Frame = 1
Query:    1 MSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLWSNQEEYRKMVEKLYK 384
            MSGD GI+AFP+ DN+F W  T+ G KDTV+E  +Y+L+L FP+DYP+KPP VKF T C+HPNVD  GNICLDIL++ W+++YDVRTILLS+QSLLGEPN +SPLN+QAA +WSNQ EY+K++ + YK
Sbjct:   44 MSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPNVDQSGNICLDILKENWTASYDVRTILLSLQSLLGEPNNASPLNAQAADMWSNQTEYKKVLHEKYK 171          
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UBE2C_MACFA (Ubiquitin-conjugating enzyme E2 C OS=Macaca fascicularis GN=UBE2C PE=2 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 1.641e-45
Identity = 83/127 (65.35%), Postives = 99/127 (77.95%), Query Frame = 1
Query:    1 MSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLWSNQEEYRKMVEKLY 381
            MSGD GISAFPE DN+F W GTI G+  TV+E   Y+LSL FP+ YP+  P VKF T C+HPNVD  GNICLDIL+DKWS+ YDVRTILLSIQSLLGEPNI SPLN+ AA+LW N   ++K +++ Y
Sbjct:   44 MSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNICLDILKDKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELWKNPTAFKKYLQETY 170          
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UBE2C_BOVIN (Ubiquitin-conjugating enzyme E2 C OS=Bos taurus GN=UBE2C PE=2 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 1.641e-45
Identity = 83/127 (65.35%), Postives = 99/127 (77.95%), Query Frame = 1
Query:    1 MSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLWSNQEEYRKMVEKLY 381
            MSGD GISAFPE DN+F W GTI G+  TV+E   Y+LSL FP+ YP+  P VKF T C+HPNVD  GNICLDIL+DKWS+ YDVRTILLSIQSLLGEPNI SPLN+ AA+LW N   ++K +++ Y
Sbjct:   44 MSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNICLDILKDKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELWKNPTAFKKYLQETY 170          
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UBE2C_XENLA (Ubiquitin-conjugating enzyme E2 C OS=Xenopus laevis GN=ube2c PE=1 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 2.143e-45
Identity = 84/128 (65.62%), Postives = 99/128 (77.34%), Query Frame = 1
Query:    1 MSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLWSNQEEYRKMVEKLYK 384
            MSGD GISAFPE DN+F W GTI G+  TV+E   Y+LSL FP+ YP+  P VKF T CFHPNVD +GNICLDIL+DKWS+ YDVRTILLS+QSLLGEPN  SPLN  AA+LW NQ  Y+K + + Y+
Sbjct:   44 MSGDKGISAFPESDNLFKWIGTIDGAVGTVYEDLRYKLSLEFPSGYPYNAPTVKFVTPCFHPNVDSHGNICLDILKDKWSALYDVRTILLSLQSLLGEPNNESPLNPYAAELWQNQTAYKKHLHEQYQ 171          
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UBE2C_DROME (Ubiquitin-conjugating enzyme E2 C OS=Drosophila melanogaster GN=vih PE=1 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 3.656e-45
Identity = 82/128 (64.06%), Postives = 102/128 (79.69%), Query Frame = 1
Query:    1 MSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLWSNQEEYRKMVEKLYK 384
            M+ + GISAFP+ +NIF W GTI G ++TV+ G  YRLSL FPN YP+  P VKF T CFHPNVD+ G ICLDIL+DKWS+ YDVRTILLSIQSLLGEPN  SPLN+QAA +W++Q+EY+K ++  Y+
Sbjct:   46 MANERGISAFPDGENIFKWVGTIAGPRNTVYSGQTYRLSLDFPNSYPYAAPVVKFLTSCFHPNVDLQGAICLDILKDKWSALYDVRTILLSIQSLLGEPNNESPLNAQAAMMWNDQKEYKKYLDAFYE 173          
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UBE2C_HUMAN (Ubiquitin-conjugating enzyme E2 C OS=Homo sapiens GN=UBE2C PE=1 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 4.775e-45
Identity = 82/127 (64.57%), Postives = 99/127 (77.95%), Query Frame = 1
Query:    1 MSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLWSNQEEYRKMVEKLY 381
            MSGD GISAFPE DN+F W GTI G+  TV+E   Y+LSL FP+ YP+  P VKF T C+HPNVD  GNICLDIL++KWS+ YDVRTILLSIQSLLGEPNI SPLN+ AA+LW N   ++K +++ Y
Sbjct:   44 MSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNICLDILKEKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELWKNPTAFKKYLQETY 170          
BLAST of CF417094 vs. ExPASy Swiss-Prot
Match: UBE2C_MOUSE (Ubiquitin-conjugating enzyme E2 C OS=Mus musculus GN=Ube2c PE=2 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 6.236e-45
Identity = 82/126 (65.08%), Postives = 98/126 (77.78%), Query Frame = 1
Query:    4 SGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLWSNQEEYRKMVEKLY 381
            SGD GISAFPE DN+F W GTI G+  TV+E   Y+LSL FP+ YP+  P VKF T C+HPNVD  GNICLDIL+DKWS+ YDVRTILLSIQSLLGEPNI SPLN+ AA+LW N   ++K +++ Y
Sbjct:   45 SGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNICLDILKDKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELWKNPTAFKKYLQETY 170          
The following BLAST results are available for this feature:
BLAST of CF417094 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 224
Match NameE-valueIdentityDescription
UBC20_ARATH2.128e-6993.94Ubiquitin carrier protein E2 20 OS=Arabidopsis tha... [more]
UBC19_ARATH1.291e-6690.91Ubiquitin carrier protein E2 19 OS=Arabidopsis tha... [more]
UBE2C_DICDI9.297e-4968.75Probable ubiquitin-conjugating enzyme E2 C OS=Dict... [more]
UBE2C_SPISO2.290e-4764.84Ubiquitin-conjugating enzyme E2 C OS=Spisula solid... [more]
UBE2C_MACFA1.641e-4565.35Ubiquitin-conjugating enzyme E2 C OS=Macaca fascic... [more]
UBE2C_BOVIN1.641e-4565.35Ubiquitin-conjugating enzyme E2 C OS=Bos taurus GN... [more]
UBE2C_XENLA2.143e-4565.63Ubiquitin-conjugating enzyme E2 C OS=Xenopus laevi... [more]
UBE2C_DROME3.656e-4564.06Ubiquitin-conjugating enzyme E2 C OS=Drosophila me... [more]
UBE2C_HUMAN4.775e-4564.57Ubiquitin-conjugating enzyme E2 C OS=Homo sapiens ... [more]
UBE2C_MOUSE6.236e-4565.08Ubiquitin-conjugating enzyme E2 C OS=Mus musculus ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-024 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-001_C4 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417094 ID=CF417094; Name=CF417094; organism=Citrus sinensis; type=EST; length=584bp
ATGAGTGGGGATTCTGGGATATCTGCATTCCCGGAGGAGGATAACATATT
CTGCTGGAAAGGTACGATCCAGGGCAGCAAAGACACTGTTTTCGAAGGAA
CTGAATACAGGCTTTCCCTTTCATTTCCCAATGATTACCCCTTCAAGCCT
CCTAAAGTGAAGTTCGAAACCGGCTGCTTCCACCCCAATGTTGATATCTA
CGGCAATATTTGCTTGGACATTCTCCAGGATAAATGGTCATCAGCTTATG
ATGTGAGAACCATTCTGCTATCGATCCAGTCTCTGCTTGGAGAACCAAAC
ATTAGCTCTCCTCTAAACAGCCAGGCAGCACAACTTTGGAGCAATCAAGA
AGAATATAGGAAGATGGTTGAGAAGCTGTACAAGCCTCCAAGTGCATAAT
TCTGAGAAGATTTGAAGGAATTAGAAGAGGGGTGTGAAAAAGGGATTGAT
ACAAGATCTTTTTCTTTCTTTCTGTAAGAGAGGATTAAATGAAATTTTCT
TTCAGTTTGGTTCATTCTTTCTTTGTTTCTTTGTAGATTTAAAGAGCCCT
TATTTTCTCCTTTATGAATTGATTTTATTTTAGA
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