CF503855

Overview
NameCF503855
Unique NameCF503855
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length249
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10763 contig Csv1_Contig10763:344..591. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CF503855 vs. ExPASy Swiss-Prot
Match: FATB_GOSHI (Myristoyl-acyl carrier protein thioesterase, chloroplastic OS=Gossypium hirsutum GN=FATB1 PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 6.443e-31
Identity = 62/80 (77.50%), Postives = 67/80 (83.75%), Query Frame = 1 
Query:    1 KQWMMLDWKPRRSDMLVDPFGIGKIVQDGFIFRQNFSIRSYEIGADGTASIETLMNHLQETALNHVMTAGLLDAWLWCNP 240
            KQWMMLDWKPRR DM++DPFGIGKIVQDG +F QNFSIRSYEIGAD TASIETLMNHLQETA+NH  +AGLL       P
Sbjct:  103 KQWMMLDWKPRRPDMVIDPFGIGKIVQDGLVFSQNFSIRSYEIGADQTASIETLMNHLQETAINHCRSAGLLGEGFGATP 182
[Close]
BLAST of CF503855 vs. ExPASy Swiss-Prot
Match: FATB_CUPHO (Myristoyl-acyl carrier protein thioesterase, chloroplastic OS=Cuphea hookeriana GN=FATB1 PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 1.435e-30
Identity = 61/71 (85.92%), Postives = 65/71 (91.55%), Query Frame = 1 
Query:    1 KQWMMLDWKPRRSDMLVDPFGIGKIVQDGFIFRQNFSIRSYEIGADGTASIETLMNHLQETALNHVMTAGL 213
            KQWMMLDWKP+R DMLVDPFG+G IVQDG +FRQNFSIRSYEIGAD TASIET+MNHLQETALNHV  AGL
Sbjct:  107 KQWMMLDWKPKRPDMLVDPFGLGSIVQDGLVFRQNFSIRSYEIGADRTASIETVMNHLQETALNHVKIAGL 177
[Close]
BLAST of CF503855 vs. ExPASy Swiss-Prot
Match: FATB_CINCA (Myristoyl-acyl carrier protein thioesterase, chloroplastic OS=Cinnamomum camphora GN=FATB1 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 7.912e-13
Identity = 36/74 (48.65%), Postives = 48/74 (64.86%), Query Frame = 1 
Query:    1 KQWMMLDWKPRRS--DMLVDPFGIGKIVQDGFIFRQNFSIRSYEIGADGTASIETLMNHLQETALNHVMTAGLL 216
            KQW  L+WKP+ +   +L D FG       G +FR+ F+IRSYE+G D + SI  +MNHLQE ALNH  + G+L
Sbjct:   79 KQWTNLEWKPKPNPPQLLDDHFG-----PHGLVFRRTFAIRSYEVGPDRSTSIVAVMNHLQEAALNHAKSVGIL 147
[Close]
BLAST of CF503855 vs. ExPASy Swiss-Prot
Match: FATB_UMBCA (Lauroyl-acyl carrier protein thioesterase, chloroplastic OS=Umbellularia californica GN=FATB1 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.007e-12
Identity = 34/74 (45.95%), Postives = 47/74 (63.51%), Query Frame = 1 
Query:    1 KQWMMLDWKPRRS--DMLVDPFGIGKIVQDGFIFRQNFSIRSYEIGADGTASIETLMNHLQETALNHVMTAGLL 216
            KQW  L+WKP+     +L D FG+      G +FR+ F+IRSYE+G D + SI  +MNH+QE  LNH  + G+L
Sbjct:   79 KQWTNLEWKPKPKLPQLLDDHFGL-----HGLVFRRTFAIRSYEVGPDRSTSILAVMNHMQEATLNHAKSVGIL 147
The following BLAST results are available for this feature:
BLAST of CF503855 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
FATB_GOSHI6.443e-3177.50Myristoyl-acyl carrier protein thioesterase, chlor... [more]
FATB_CUPHO1.435e-3085.92Myristoyl-acyl carrier protein thioesterase, chlor... [more]
FATB_CINCA7.912e-1348.65Myristoyl-acyl carrier protein thioesterase, chlor... [more]
FATB_UMBCA3.007e-1245.95Lauroyl-acyl carrier protein thioesterase, chlorop... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-342 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-10_E08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503855 ID=CF503855; Name=CF503855; organism=Citrus sinensis; type=EST; length=249bp
AAGCAGTGGATGATGCTTGATTGGAAACCAAGGCGATCTGACATGCTTGT
GGACCCATTTGGGATTGGGAAAATAGTTCAGGATGGTTTCATTTTCCGGC
AAAATTTCTCAATTAGATCATATGAGATAGGTGCTGATGGTACTGCATCT
ATAGAGACATTAATGAATCATTTACAGGAAACAGCGCTTAATCATGTTAT
GACTGCTGGTCTTCTAGATGCCTGGCTTTGGTGCAACCCCAGCGATGGC
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