CF503861

Overview
NameCF503861
Unique NameCF503861
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length329
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF503861 vs. ExPASy Swiss-Prot
Match: GLR36_ARATH (Glutamate receptor 3.6 OS=Arabidopsis thaliana GN=GLR3.6 PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 1.458e-38
Identity = 75/107 (70.09%), Postives = 91/107 (85.05%), Query Frame = 2
Query:    2 SFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHY 322
            SFSATDPT+S LQFP+F+RT+Q+D +QMAAIA+IV  YGWREV+AIY DDD+GRNG+AALGD L+ KRCRIS+KA L    T + ITDLL+KVAL+ESRIIVVH  +
Sbjct:  123 SFSATDPTMSPLQFPFFIRTSQNDLFQMAAIADIVQFYGWREVVAIYGDDDYGRNGVAALGDRLSEKRCRISYKAALPPAPTRENITDLLIKVALSESRIIVVHASF 229          
BLAST of CF503861 vs. ExPASy Swiss-Prot
Match: GLR31_ORYSJ (Glutamate receptor 3.1 OS=Oryza sativa subsp. japonica GN=GLR3.1 PE=1 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 1.561e-32
Identity = 60/106 (56.60%), Postives = 89/106 (83.96%), Query Frame = 2
Query:    2 SFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTH 319
            SFSATDPTLSSL++P+FVRTT SDQ+QM A+A++V++YGW++V  I+VD+D+GRN I++LGD L+ +R +I +KAP    A+ +EI D+L+KVA+ ESR+I++H +
Sbjct:  123 SFSATDPTLSSLEYPFFVRTTVSDQFQMTAVADLVEYYGWKQVTTIFVDNDYGRNAISSLGDELSKRRSKILYKAPFRPGASNNEIADVLIKVAMMESRVIILHAN 228          
BLAST of CF503861 vs. ExPASy Swiss-Prot
Match: GLR34_ARATH (Glutamate receptor 3.4 OS=Arabidopsis thaliana GN=GLR3.4 PE=2 SV=2)

HSP 1 Score: 135.961 bits (341), Expect = 5.934e-32
Identity = 67/106 (63.21%), Postives = 82/106 (77.36%), Query Frame = 2
Query:    2 SFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTH 319
            SF ATDPTLSSLQFPYF+RTTQ+D +QM AIA+ + + GWR+VIAI+VDD+ GRNGI+ LGD LA KR RIS+KA ++  A    I DLLV V L ESR+ VVH +
Sbjct:  154 SFGATDPTLSSLQFPYFLRTTQNDYFQMHAIADFLSYSGWRQVIAIFVDDECGRNGISVLGDVLAKKRSRISYKAAITPGADSSSIRDLLVSVNLMESRVFVVHVN 259          
BLAST of CF503861 vs. ExPASy Swiss-Prot
Match: GLR33_ARATH (Glutamate receptor 3.3 OS=Arabidopsis thaliana GN=GLR3.3 PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 1.322e-31
Identity = 63/108 (58.33%), Postives = 84/108 (77.78%), Query Frame = 2
Query:    2 SFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDDHGRNGIAALGDTLAAKRCRISFKAPL--SVEATEDEITDLLVKVALTESRIIVVHTH 319
            SF+ TDP +S LQFPYF+RTTQSD YQM AIA IVD YGW+EVIA++VDDD GRNG+AAL D LA++R RI++KA L       ++EI ++L+K+ L + RI+V+H +
Sbjct:  122 SFAVTDPVMSPLQFPYFIRTTQSDLYQMDAIASIVDFYGWKEVIAVFVDDDFGRNGVAALNDKLASRRLRITYKAGLHPDTAVNKNEIMNMLIKIMLLQPRIVVIHVY 229          
BLAST of CF503861 vs. ExPASy Swiss-Prot
Match: GLR35_ARATH (Glutamate receptor 3.5 OS=Arabidopsis thaliana GN=GLR3.5 PE=2 SV=2)

HSP 1 Score: 133.65 bits (335), Expect = 2.945e-31
Identity = 64/106 (60.38%), Postives = 81/106 (76.42%), Query Frame = 2
Query:    2 SFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTH 319
            SF+ATDPTLSSLQ+PYF+RTTQ+D +QM AI + V ++ WREV+AI+VDD++GRNGI+ LGD LA KR +IS+KA     A    I+DLL  V L ESRI VVH +
Sbjct:  141 SFAATDPTLSSLQYPYFLRTTQNDYFQMNAITDFVSYFRWREVVAIFVDDEYGRNGISVLGDALAKKRAKISYKAAFPPGADNSSISDLLASVNLMESRIFVVHVN 246          
BLAST of CF503861 vs. ExPASy Swiss-Prot
Match: GLR32_ARATH (Glutamate receptor 3.2 OS=Arabidopsis thaliana GN=GLR3.2 PE=1 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 3.369e-27
Identity = 62/108 (57.41%), Postives = 81/108 (75.00%), Query Frame = 2
Query:    2 SFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDDHGRNGIAALGDTLAAKRCRISFKA--PLSVEATED-EITDLLVKVALTESRIIVVHT 316
            SF+A DP+LS+LQFP+FV+T  SD + M AIAE++ +YGW EVIA+Y DDD+ RNGI ALGD L  +RC+IS+KA  PL V  T   EI + LVK+   ESR+I+V+T
Sbjct:  123 SFTALDPSLSALQFPFFVQTAPSDLFLMRAIAEMISYYGWSEVIALYNDDDNSRNGITALGDELEGRRCKISYKAVLPLDVVITSPREIINELVKIQGMESRVIIVNT 230          
BLAST of CF503861 vs. ExPASy Swiss-Prot
Match: GLR31_ARATH (Glutamate receptor 3.1 OS=Arabidopsis thaliana GN=GLR3.1 PE=2 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 5.747e-27
Identity = 61/111 (54.95%), Postives = 81/111 (72.97%), Query Frame = 2
Query:    2 SFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDDHGRNGIAALGDTLAAKRCRISFKA--PLSVEATED-EITDLLVKVALTESRIIVVHTHYN 325
            SF+A DPTLS LQFP+FV+T  SD + M AIAE++ +YGW +V+A+Y DDD+ RNG+ ALGD L  +RC+IS+KA  PL V  T   EI + L+K+   ESR+IVV+T  N
Sbjct:  123 SFTALDPTLSPLQFPFFVQTAPSDLFLMRAIAEMITYYGWSDVVALYNDDDNSRNGVTALGDELEERRCKISYKAVLPLDVVITSPVEIIEELIKIRGMESRVIVVNTFPN 233          
BLAST of CF503861 vs. ExPASy Swiss-Prot
Match: GLR37_ARATH (Glutamate receptor 3.7 OS=Arabidopsis thaliana GN=GLR3.7 PE=2 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 7.506e-27
Identity = 54/104 (51.92%), Postives = 79/104 (75.96%), Query Frame = 2
Query:    2 SFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVH 313
            SF+ATDPTLS+LQFP+F+RTT +D +QM+A+ ++++ YGW+EVI++Y DD+ GRNG++AL D L  KR RIS+K PLSV + E  +T+ L K      R+ ++H
Sbjct:  124 SFAATDPTLSALQFPFFLRTTPNDAHQMSALVDLINFYGWKEVISVYSDDELGRNGVSALDDELYKKRSRISYKVPLSVHSDEKFLTNALNKSKSIGPRVYILH 227          
BLAST of CF503861 vs. ExPASy Swiss-Prot
Match: GLR23_ARATH (Glutamate receptor 2.3 OS=Arabidopsis thaliana GN=GLR2.3 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.161e-17
Identity = 40/108 (37.04%), Postives = 68/108 (62.96%), Query Frame = 2
Query:    2 SFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYN 325
            S+SAT P L+SL+ PYF+R T  D +Q+  I  I+  +GWREV+ +Y+D+  G   +  L D L     RI +++ +++ AT+ EI+  L+K+    +R+ +VH +Y+
Sbjct:  124 SYSATSPILTSLRSPYFLRATYEDSFQVQPIKAIIKLFGWREVVPVYIDNTFGEGIMPRLTDALQDINVRIPYRSVIAINATDHEISVELLKMMNMPTRVFLVHMYYD 231          
BLAST of CF503861 vs. ExPASy Swiss-Prot
Match: GLR24_ARATH (Glutamate receptor 2.4 OS=Arabidopsis thaliana GN=GLR2.4 PE=2 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 1.201e-16
Identity = 44/104 (42.31%), Postives = 64/104 (61.54%), Query Frame = 2
Query:    2 SFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVH 313
            SFSAT P L S + PYF R+T  D  Q+ AI+EI+  +GWREV+ +Y ++  G   +  L D L A   RI ++  +S  AT+DEI+  L+K+    +R+ VVH
Sbjct:  125 SFSATSPFLDSGRSPYFFRSTYDDSSQVQAISEIIKVFGWREVVPVYENNAFGEGIMPGLTDALQAINIRIPYRTVISPNATDDEISVDLLKLMTKPTRVFVVH 228          
The following BLAST results are available for this feature:
BLAST of CF503861 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
GLR36_ARATH1.458e-3870.09Glutamate receptor 3.6 OS=Arabidopsis thaliana GN=... [more]
GLR31_ORYSJ1.561e-3256.60Glutamate receptor 3.1 OS=Oryza sativa subsp. japo... [more]
GLR34_ARATH5.934e-3263.21Glutamate receptor 3.4 OS=Arabidopsis thaliana GN=... [more]
GLR33_ARATH1.322e-3158.33Glutamate receptor 3.3 OS=Arabidopsis thaliana GN=... [more]
GLR35_ARATH2.945e-3160.38Glutamate receptor 3.5 OS=Arabidopsis thaliana GN=... [more]
GLR32_ARATH3.369e-2757.41Glutamate receptor 3.2 OS=Arabidopsis thaliana GN=... [more]
GLR31_ARATH5.747e-2754.95Glutamate receptor 3.1 OS=Arabidopsis thaliana GN=... [more]
GLR37_ARATH7.506e-2751.92Glutamate receptor 3.7 OS=Arabidopsis thaliana GN=... [more]
GLR23_ARATH3.161e-1737.04Glutamate receptor 2.3 OS=Arabidopsis thaliana GN=... [more]
GLR24_ARATH1.201e-1642.31Glutamate receptor 2.4 OS=Arabidopsis thaliana GN=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-348 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-10_F03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503861 ID=CF503861; Name=CF503861; organism=Citrus sinensis; type=EST; length=329bp
GTCATTCTCAGCCACAGACCCTACTTTGTCTTCACTTCAATTTCCATACT
TCGTCAGGACTACCCAGAGTGATCAATATCAGATGGCTGCAATAGCAGAA
ATTGTAGATCACTATGGATGGAGGGAGGTAATTGCAATATATGTAGATGA
TGATCACGGGAGAAATGGGATAGCTGCATTAGGAGATACACTTGCTGCAA
AGCGTTGTCGGATATCTTTCAAAGCACCTTTGAGCGTTGAAGCAACTGAG
GATGAAATCACTGACTTACTGGTTAAGGTTGCTTTAACTGAGTCTCGGAT
TATTGTTGTTCATACTCATTACAATCGGG
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