CF504080

Overview
NameCF504080
Unique NameCF504080
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length375
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11173 contig Csv1_Contig11173:64..438. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504080 vs. ExPASy Swiss-Prot
Match: ODPB_ARATH (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Arabidopsis thaliana GN=PDH2 PE=1 SV=2)

HSP 1 Score: 151.369 bits (381), Expect = 1.336e-36
Identity = 76/107 (71.03%), Postives = 90/107 (84.11%), Query Frame = 2
Query:   53 MWGIIRQKVAAGGGSPVARIRPVVSNLRNYSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYG 373
            M GI+RQ+ A  G S + R R  + + R+Y++  K+M VR+ALNSA+DEEMSADPKVF+MGEEVG+YQGAYKI+KGLLEKYGPERV DTPITEAGFTGIGVGAAY G
Sbjct:    1 MLGILRQR-AIDGASTLRRTRFALVSARSYAAGAKEMTVRDALNSAIDEEMSADPKVFVMGEEVGQYQGAYKITKGLLEKYGPERVYDTPITEAGFTGIGVGAAYAG 106          
BLAST of CF504080 vs. ExPASy Swiss-Prot
Match: ODPB_PEA (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 2.519e-35
Identity = 80/107 (74.77%), Postives = 85/107 (79.44%), Query Frame = 2
Query:   53 MWGIIRQKVAAGGGSPVARIRPVVSNLRNYSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYG 373
            M G+IR K           IRP  S  R +SSA KQM VR+ALNSALD EMSAD KVFLMGEEVGEYQGAYK++KGLLEKYGPERVLDTPITEAGFTGIGVGAAYYG
Sbjct:    1 MLGVIRNKT----------IRPSFSAFRFFSSA-KQMTVRDALNSALDVEMSADSKVFLMGEEVGEYQGAYKVTKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYG 96          
BLAST of CF504080 vs. ExPASy Swiss-Prot
Match: ODPB_SCHPO (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Schizosaccharomyces pombe GN=pdb1 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 6.876e-25
Identity = 51/77 (66.23%), Postives = 66/77 (85.71%), Query Frame = 2
Query:  143 SSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYG 373
            S+ VK+M VR+ALNSA++EEM  D +VFL+GEEV +Y GAYKIS+GLL+K+GP+RV+DTPITE GFTG+  GAA+ G
Sbjct:   32 SNGVKEMTVRDALNSAMEEEMKRDDRVFLIGEEVAQYNGAYKISRGLLDKFGPKRVIDTPITEMGFTGLATGAAFAG 108          
BLAST of CF504080 vs. ExPASy Swiss-Prot
Match: ODPB_DICDI (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Dictyostelium discoideum GN=pdhB PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.532e-24
Identity = 51/75 (68.00%), Postives = 64/75 (85.33%), Query Frame = 2
Query:  149 AVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYG 373
            A K++ VR+A+NSALDEE++ D KVF+MGEEV +Y GAYKI+KGL +KYG +R++DTPITEAGF GIGVGAA  G
Sbjct:   25 ATKEVTVRDAINSALDEELARDEKVFIMGEEVAQYNGAYKITKGLFDKYGGDRIIDTPITEAGFAGIGVGAAMAG 99          
BLAST of CF504080 vs. ExPASy Swiss-Prot
Match: ODPB_YEAST (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Saccharomyces cerevisiae GN=PDB1 PE=1 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 6.436e-23
Identity = 52/93 (55.91%), Postives = 67/93 (72.04%), Query Frame = 2
Query:   95 SPVARIRPVVSNLRNYSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYG 373
            +P + +RP  +      S+ K M VREALNSA+ EE+  D  VFL+GEEV +Y GAYK+SKGLL+++G  RV+DTPITE GFTG+ VGAA  G
Sbjct:   17 APTSFVRPSAAAAALRFSSTKTMTVREALNSAMAEELDRDDDVFLIGEEVAQYNGAYKVSKGLLDRFGERRVVDTPITEYGFTGLAVGAALKG 109          
BLAST of CF504080 vs. ExPASy Swiss-Prot
Match: ODPB_RICFE (Pyruvate dehydrogenase E1 component subunit beta OS=Rickettsia felis GN=pdhB PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.446e-22
Identity = 48/72 (66.67%), Postives = 60/72 (83.33%), Query Frame = 2
Query:  158 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYG 373
            Q+ VREAL  A+ EEM  D KVF+MGEEV EYQGAYK+++GLLE++GP+RV+DTPITE GF G+ VGAA+ G
Sbjct:    2 QITVREALRDAMQEEMIRDDKVFVMGEEVAEYQGAYKVTQGLLEQFGPKRVIDTPITEYGFAGLAVGAAFAG 73          
BLAST of CF504080 vs. ExPASy Swiss-Prot
Match: ODPB_RICBR (Pyruvate dehydrogenase E1 component subunit beta OS=Rickettsia bellii (strain RML369-C) GN=pdhB PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.446e-22
Identity = 48/72 (66.67%), Postives = 60/72 (83.33%), Query Frame = 2
Query:  158 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYG 373
            Q+ VREAL  A+ EEM  D KVF+MGEEV EYQGAYK+++GLLE++GP+RV+DTPITE GF G+ VGAA+ G
Sbjct:    2 QITVREALRDAMQEEMIRDDKVFVMGEEVAEYQGAYKVTQGLLEQFGPKRVIDTPITEYGFAGLAVGAAFAG 73          
BLAST of CF504080 vs. ExPASy Swiss-Prot
Match: ODPB_RICCN (Pyruvate dehydrogenase E1 component subunit beta OS=Rickettsia conorii GN=pdhB PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.116e-22
Identity = 47/72 (65.28%), Postives = 60/72 (83.33%), Query Frame = 2
Query:  158 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYG 373
            Q+ VREAL  A+ EEM  D KVF++GEEV EYQGAYK+++GLLE++GP+RV+DTPITE GF G+ VGAA+ G
Sbjct:    2 QITVREALRDAMQEEMIRDDKVFVIGEEVAEYQGAYKVTQGLLEQFGPKRVIDTPITEYGFAGLAVGAAFAG 73          
BLAST of CF504080 vs. ExPASy Swiss-Prot
Match: ODPB_CAEEL (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Caenorhabditis elegans GN=C04C3.3 PE=1 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 7.116e-22
Identity = 49/75 (65.33%), Postives = 59/75 (78.67%), Query Frame = 2
Query:  149 AVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYG 373
            A   M VR+ALN A+DEE+  D +VFLMGEEV +Y GAYKISKGL +K+G +RV+DTPITE GF GI VGAA+ G
Sbjct:   21 AASTMTVRDALNQAMDEEIKRDDRVFLMGEEVAQYDGAYKISKGLWKKHGDKRVVDTPITEMGFAGIAVGAAFAG 95          
BLAST of CF504080 vs. ExPASy Swiss-Prot
Match: ODPB_RICTY (Pyruvate dehydrogenase E1 component subunit beta OS=Rickettsia typhi GN=pdhB PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.024e-21
Identity = 46/72 (63.89%), Postives = 59/72 (81.94%), Query Frame = 2
Query:  158 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYG 373
            Q+ VREAL  A+ EEM  D KVF++GEEV EYQGAYK+++GLLE++G +RV+DTPITE GF G+ VGAA+ G
Sbjct:    2 QITVREALRDAMQEEMLRDDKVFVIGEEVAEYQGAYKVTQGLLEQFGSKRVIDTPITEYGFAGLAVGAAFAG 73          
The following BLAST results are available for this feature:
BLAST of CF504080 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
ODPB_ARATH1.336e-3671.03Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_PEA2.519e-3574.77Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_SCHPO6.876e-2566.23Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_DICDI1.532e-2468.00Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_YEAST6.436e-2355.91Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_RICFE2.446e-2266.67Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_RICBR2.446e-2266.67Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_RICCN7.116e-2265.28Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_CAEEL7.116e-2265.33Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_RICTY6.024e-2163.89Pyruvate dehydrogenase E1 component subunit beta O... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-568 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-13_D11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504080 ID=CF504080; Name=CF504080; organism=Citrus sinensis; type=EST; length=375bp
GATCGCTGGTAACTTTCACTTCTGGGCAGGGTTTTCATTGAAACAGTTAA
AGATGTGGGGAATTATTAGGCAGAAAGTGGCTGCTGGAGGAGGTTCTCCT
GTTGCGAGAATTCGCCCTGTGGTATCCAATTTGAGAAACTACTCATCTGC
AGTTAAACAGATGATGGTGAGAGAGGCTTTAAACTCTGCTCTTGATGAGG
AGATGTCTGCTGATCCTAAAGTTTTCTTGATGGGCGAAGAGGTTGGGGAA
TATCAGGGTGCTTACAAGATATCCAAAGGGCTATTGGAGAAATATGGCCC
TGAGAGAGTTCTTGATACCCCGATCACTGAGGCTGGTTTTACTGGGATTG
GAGTTGGTGCTGCATACTATGGTTT
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