CF831952

Overview
NameCF831952
Unique NameCF831952
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length764
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10376 contig Csv1_Contig10376:49..812. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CF831952 vs. ExPASy Swiss-Prot
Match: RK29_ARATH (50S ribosomal protein L29, chloroplastic OS=Arabidopsis thaliana GN=RPL29 PE=1 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 2.241e-39
Identity = 94/159 (59.12%), Postives = 111/159 (69.81%), Query Frame = -3 
Query:  283 MSLSIAS--TTTITFPTEPFSKIPKSTFNGIQIRQSWPIRTPLRFATXXXXXXXXSTVVMMAKREEEMKEIRAKTTEEINEEVVDLKGELFMLRLQKSVRNEFKSSEFXXXXXXXXXMLTVKRERELEEGINKRLSRKLDRQWKKSIVVRPPPSLKKLQ 753
            +SLSIA+  T  I       +    S+F+G++I+     R P   A          +VVMM+KRE E+KEIR+KTTE++ EEVVDLKGELFMLRLQKS RNEFKSS+F         MLTVKRERE++EGI KRLSRKLDRQWKKSIV RPPPSLKKLQ
Sbjct:    2 LSLSIATPGTAAIFRRGTASATSTSSSFHGVRIQHQVSARVPA--AATISSSSPKPSVVMMSKREAELKEIRSKTTEQLQEEVVDLKGELFMLRLQKSARNEFKSSDFRRMKKQVARMLTVKREREIKEGIKKRLSRKLDRQWKKSIVPRPPPSLKKLQ 158
[Close]
BLAST of CF831952 vs. ExPASy Swiss-Prot
Match: RK29_MAIZE (50S ribosomal protein L29, chloroplastic OS=Zea mays GN=RPL29 PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.400e-33
Identity = 81/155 (52.26%), Postives = 105/155 (67.74%), Query Frame = -3 
Query:  292 TMSLSIASTTTITFPTEPFSKIPKSTFNGIQIRQSWPIRTPLRFATXXXXXXXXSTVVMMAKREEEMKEIRAKTTEEINEEVVDLKGELFMLRLQKSVRNEFKSSEFXXXXXXXXXMLTVKRERELEEGINKRLSRKLDRQWKKSIVVRPPPSLK 756
            TMSL+ AS    + P    ++ P + F  I++  +   R               + +V MAKRE+E++EIRA TTE++ EEVVDLKGELF+LRL++S R EFK+SEF         MLTVKRERE+E+GINKRLSRKLDR+WK+SIVVRPPPSL+
Sbjct:    3 TMSLAAASPLA-SIPRGIAAQAPCAAFLSIRLGGATATRFAGLAVASQPAERRAAAMVAMAKREQELEEIRAMTTEQMEEEVVDLKGELFLLRLKRSARQEFKNSEFSRMRKRIARMLTVKREREIEQGINKRLSRKLDRKWKQSIVVRPPPSLR 156
The following BLAST results are available for this feature:
BLAST of CF831952 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
RK29_ARATH2.241e-3959.1250S ribosomal protein L29, chloroplastic OS=Arabid... [more]
RK29_MAIZE2.400e-3352.2650S ribosomal protein L29, chloroplastic OS=Zea ma... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_01B03_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831952 ID=CF831952; Name=CF831952; organism=Citrus sinensis; type=EST; length=764bp
TTTTTTTTTTTTTTTTTAAATCAGAAGAGGTAATAGCTACAGAAACTTTT
TTTGAATAGAACAAACACTTCCTCAAGTTTGTTTCACGGGAGGAAAAGTT
AAAAATATTATACAGAAATAGGAACATACCTACAATACAGAACATTACAC
ACAAATTGTTTGAGCCAGCAAATCTGCAATGATTTCAGGAGCTTTCACTT
AAAAAAATGAAAACAAATTATTTGCAAAGTGTATATAGATGGCTCATGCA
GACTTCTCAGCTTCTGCAGCCGCCTCTTCCTCTTGCAACTTCTTCAAGGA
TGGAGGTGGTCTAACTACAATGCTTTTCTTCCATTGTCGATCAAGCTTTC
TGGACAATCTCTTGTTAATTCCTTCCTCAAGCTCTCTTTCACGTTTAACA
GTAAGCATGCGAGCAATCCTTCTGCGCATACGACGAAATTCACTAGACTT
GAACTCATTGCGAACTGATTTTTGAAGACGTAGCATAAACAGCTCACCCT
TCAAATCAACGACCTCTTCGTTAATCTCCTCTGTCGTTTTGGCTCTAATT
TCCTTCATTTCTTCTTCTCTCTTTGCCATCATAACCACTGTCGACGAACC
ACGGCTTCCCGACGACGAAGTCGCGAAACGCAACGGCGTGCGAATAGGCC
ACGACTGACGAATTTGGATGCCGTTAAAGGTTGACTTTGGAATTTTCGAG
AAGGGCTCTGTTGGGAAAGTGATTGTTGTTGTCGAAGCAATTGAGAGACT
CATCGTCATCTTTT
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