CF831957

Overview
NameCF831957
Unique NameCF831957
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length571
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF831957 vs. ExPASy Swiss-Prot
Match: ATPG2_ARATH (ATP synthase gamma chain 2, chloroplastic OS=Arabidopsis thaliana GN=ATPC2 PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 4.949e-39
Identity = 83/114 (72.81%), Postives = 97/114 (85.09%), Query Frame = 2
Query:    2 DELPMLTTNEGKMIVERDSVTFNKGELSPLMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEALTQ 343
            DE+  LT+ +GK+ VER  +   K E+SPLM FEQDP QILDAMMPLY+NSQILRALQES ASE+A+RM+AMS ATDNA ELKKNL++AYN+ RQAKITGELLEIVAGAEAL +
Sbjct:  272 DEMFRLTSKDGKLAVERTKLEVEKPEISPLMQFEQDPVQILDAMMPLYLNSQILRALQESLASELASRMNAMSNATDNAVELKKNLTMAYNRARQAKITGELLEIVAGAEALRE 385          
BLAST of CF831957 vs. ExPASy Swiss-Prot
Match: ATPG_MAIZE (ATP synthase subunit gamma, chloroplastic OS=Zea mays PE=1 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 1.881e-38
Identity = 81/112 (72.32%), Postives = 96/112 (85.71%), Query Frame = 2
Query:    2 DELPMLTTNEGKMIVERDSVTFNKGELSPLMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 337
            DEL  LTT EGK+ VER+ V       SP++ FEQDP QILDA++PLY+NSQILRALQES ASE+AARMSAMS+ATDNA EL+KNLS+AYN++RQAKITGE+LEIVAGA+AL
Sbjct:  246 DELFRLTTKEGKLTVEREKVKIETQPFSPVVQFEQDPVQILDALLPLYLNSQILRALQESLASELAARMSAMSSATDNAIELRKNLSIAYNRQRQAKITGEILEIVAGADAL 357          
BLAST of CF831957 vs. ExPASy Swiss-Prot
Match: ATPG_TOBAC (ATP synthase gamma chain, chloroplastic OS=Nicotiana tabacum GN=ATPC PE=1 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 7.146e-38
Identity = 80/112 (71.43%), Postives = 94/112 (83.93%), Query Frame = 2
Query:    2 DELPMLTTNEGKMIVERDSVTFNKGELSPLMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 337
            DE   LTT EGK+ VERD +     + SP++ FEQDP QILDA++PLY+NSQILRALQES ASE+AARMSAMS+ATDNA ELKKNLS  YN++RQAKITGE+LEIVAGA+AL
Sbjct:  265 DEFFRLTTKEGKLTVERDIIRTKTTDFSPILQFEQDPVQILDALLPLYLNSQILRALQESLASELAARMSAMSSATDNATELKKNLSRVYNRQRQAKITGEILEIVAGADAL 376          
BLAST of CF831957 vs. ExPASy Swiss-Prot
Match: ATPG_SPIOL (ATP synthase gamma chain, chloroplastic OS=Spinacia oleracea GN=ATPC PE=1 SV=2)

HSP 1 Score: 153.68 bits (387), Expect = 6.049e-37
Identity = 79/111 (71.17%), Postives = 92/111 (82.88%), Query Frame = 2
Query:    2 DELPMLTTNEGKMIVERDSVTFNKGELSPLMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEA 334
            DEL  LTT EGK+ VERD +       SP++ FEQDPAQILDA++PLY+NSQILRALQES ASE+AARM+AMS ATDNA+ELKK LS+ YN+ RQAKITGE+LEIVAGA A
Sbjct:  252 DELFRLTTKEGKLTVERDMIKTETPAFSPILEFEQDPAQILDALLPLYLNSQILRALQESLASELAARMTAMSNATDNANELKKTLSINYNRARQAKITGEILEIVAGANA 362          
BLAST of CF831957 vs. ExPASy Swiss-Prot
Match: ATPG1_ARATH (ATP synthase gamma chain 1, chloroplastic OS=Arabidopsis thaliana GN=ATPC1 PE=1 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.141e-35
Identity = 75/111 (67.57%), Postives = 93/111 (83.78%), Query Frame = 2
Query:    2 DELPMLTTNEGKMIVERDSVTFNKGELSPLMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEA 334
            DE   LTT EGK+ VER++      + SP++ FEQDP QILDA++PLY+NSQILRALQES ASE+AARMSAMS+A+DNA +LKK+LS+ YN++RQAKITGE+LEIVAGA A
Sbjct:  261 DEFFRLTTKEGKLTVERETFRTPTADFSPILQFEQDPVQILDALLPLYLNSQILRALQESLASELAARMSAMSSASDNASDLKKSLSMVYNRKRQAKITGEILEIVAGANA 371          
BLAST of CF831957 vs. ExPASy Swiss-Prot
Match: ATPG_PEA (ATP synthase gamma chain, chloroplastic OS=Pisum sativum GN=ATPC PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.181e-32
Identity = 72/108 (66.67%), Postives = 86/108 (79.63%), Query Frame = 2
Query:    2 DELPMLTTNEGKMIVERDSVTFNKGELSPLMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAG 325
            DEL  LTT EGK+ VERD +     + SP++ FEQDP QILDA++PLY+NSQILR LQES ASE+AARMSAMS+A DNA ELK +L+  YN+  QAKITGE+LEIVAG
Sbjct:  262 DELFRLTTKEGKLTVERDVIRSKTVDFSPILQFEQDPVQILDALLPLYLNSQILRPLQESLASELAARMSAMSSAFDNASELKTDLTRVYNRATQAKITGEILEIVAG 369          
BLAST of CF831957 vs. ExPASy Swiss-Prot
Match: ATPG_ANAVT (ATP synthase gamma chain OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=atpG PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 1.885e-30
Identity = 70/113 (61.95%), Postives = 89/113 (78.76%), Query Frame = 2
Query:    2 DELPMLTTNEGKMIVERDSVTFNKGELSPLMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEALT 340
            DE+  LTT  G+  VER +VT     L   M+FEQDP QILD+++PLY+++Q+LRALQES ASE+AARM+AMS A+DNA EL K+LS++YN+ RQA IT ELLE+V GAEALT
Sbjct:  203 DEIFRLTTRGGQFEVERQTVTTQARPLPRDMIFEQDPVQILDSLLPLYLSNQLLRALQESAASELAARMTAMSNASDNAGELIKSLSLSYNKARQAAITQELLEVVGGAEALT 315          
BLAST of CF831957 vs. ExPASy Swiss-Prot
Match: ATPG_CHLRE (ATP synthase gamma chain, chloroplastic OS=Chlamydomonas reinhardtii GN=ATPC PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 2.462e-30
Identity = 67/111 (60.36%), Postives = 86/111 (77.48%), Query Frame = 2
Query:    2 DELPMLTTNEGKMIVERDSVTFNKGELSPLMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEA 334
            DE+  LTT  G+  VER+  T     L P ++FEQ+PAQILDA++PLYM+S +LR+LQE+ ASE+AARM+AM+ A+DNA ELKK L+V YN++RQAKIT EL EIV GA A
Sbjct:  245 DEIFKLTTKGGEFAVEREKTTIETEALDPSLIFEQEPAQILDALLPLYMSSCLLRSLQEALASELAARMNAMNNASDNAKELKKGLTVQYNKQRQAKITQELAEIVGGAAA 355          
BLAST of CF831957 vs. ExPASy Swiss-Prot
Match: ATPG_NOSP7 (ATP synthase gamma chain OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=atpG PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 4.199e-30
Identity = 68/113 (60.18%), Postives = 88/113 (77.88%), Query Frame = 2
Query:    2 DELPMLTTNEGKMIVERDSVTFNKGELSPLMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEALT 340
            DE+  LTT  GK  VER+ V      L+P M+FEQDP QILD+++PLY+++Q+LRALQES ASE+AARM+AMS A++NA EL   L+++YN+ RQA IT ELLE+V GAEALT
Sbjct:  203 DEIFRLTTRGGKFEVEREKVASQVRPLAPDMIFEQDPVQILDSLLPLYLSNQLLRALQESAASELAARMTAMSNASENAGELINTLTLSYNKARQAAITQELLEVVGGAEALT 315          
BLAST of CF831957 vs. ExPASy Swiss-Prot
Match: ATPG_ANASP (ATP synthase gamma chain OS=Anabaena sp. (strain PCC 7120) GN=atpG PE=3 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 5.484e-30
Identity = 69/113 (61.06%), Postives = 89/113 (78.76%), Query Frame = 2
Query:    2 DELPMLTTNEGKMIVERDSVTFNKGELSPLMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEALT 340
            DE+  LTT  G+  VER +VT     L   M+FEQDP QILD+++PLY+++Q+LRALQES ASE+AARM+AMS A++NA EL K+LS++YN+ RQA IT ELLE+V GAEALT
Sbjct:  203 DEIFRLTTRGGQFQVERQTVTSQARPLPRDMIFEQDPVQILDSLLPLYLSNQLLRALQESAASELAARMTAMSNASENAGELIKSLSLSYNKARQAAITQELLEVVGGAEALT 315          
The following BLAST results are available for this feature:
BLAST of CF831957 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPG2_ARATH4.949e-3972.81ATP synthase gamma chain 2, chloroplastic OS=Arabi... [more]
ATPG_MAIZE1.881e-3872.32ATP synthase subunit gamma, chloroplastic OS=Zea m... [more]
ATPG_TOBAC7.146e-3871.43ATP synthase gamma chain, chloroplastic OS=Nicotia... [more]
ATPG_SPIOL6.049e-3771.17ATP synthase gamma chain, chloroplastic OS=Spinaci... [more]
ATPG1_ARATH1.141e-3567.57ATP synthase gamma chain 1, chloroplastic OS=Arabi... [more]
ATPG_PEA1.181e-3266.67ATP synthase gamma chain, chloroplastic OS=Pisum s... [more]
ATPG_ANAVT1.885e-3061.95ATP synthase gamma chain OS=Anabaena variabilis (s... [more]
ATPG_CHLRE2.462e-3060.36ATP synthase gamma chain, chloroplastic OS=Chlamyd... [more]
ATPG_NOSP74.199e-3060.18ATP synthase gamma chain OS=Nostoc punctiforme (st... [more]
ATPG_ANASP5.484e-3061.06ATP synthase gamma chain OS=Anabaena sp. (strain P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01B09_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831957 ID=CF831957; Name=CF831957; organism=Citrus sinensis; type=EST; length=571bp
GGATGAGTTGCCTATGTTGACAACTAATGAAGGGAAGATGATTGTCGAGA
GAGATAGCGTGACATTCAATAAAGGGGAATTATCGCCTCTTATGCTGTTT
GAGCAAGATCCGGCTCAGATTCTTGATGCGATGATGCCACTCTATATGAA
TAGTCAGATTTTGAGGGCATTGCAGGAGTCATTCGCTAGTGAGGTTGCAG
CGAGGATGAGTGCCATGAGTACTGCTACGGATAATGCTGATGAGTTGAAG
AAAAATCTTTCAGTTGCTTATAACCAAGAACGCCAGGCTAAAATCACTGG
TGAACTATTGGAGATTGTTGCTGGAGCCGAGGCACTTACACAGTTTGATT
AATTTGACCCTTTGTTTTTCCTTGACTTGATTTTTCTATATCCCTTTTTT
TTGTTTGGGGGGGTTGAGAATATTGCAGTTCACATCATATGCTAGTTAGT
ATATTCATCATTGAACGCTGGTTTATAATTTGTATTGATGACTTGAGTAT
TTCATATGGTAAACTAGAATGTCCAACGAAAAGAAATAACATTGTTTTTT
CTGGCAAAAAAAAAAAAAAAA
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