CF831960

Overview
NameCF831960
Unique NameCF831960
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length797
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig999 contig Csv1_Contig999:294..1090. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF831960 vs. ExPASy Swiss-Prot
Match: UCRI1_TOBAC (Cytochrome b-c1 complex subunit Rieske-1, mitochondrial (Fragment) OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 389.037 bits (998), Expect = 1.571e-107
Identity = 185/199 (92.96%), Postives = 195/199 (97.99%), Query Frame = -2
Query:  200 VPGVPATVAAGKNPTSKIVYDEYNHERYPPGDPSKRAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPSYSFLDENKMLIG 796
            VP +P TVAA KNPTSKIVYDE+NHERYPPGDPSKRAFAYFVLTGGRFVYASL+RLLILKFVLSMSASKDVLA+ASLEVDLSSIEPG+TVTVKWRGKPVFIRRRTE+DI LANSVDLGSLRDPQQDAERVKNPEWLVV+GVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVP+YSFL+ENK+LIG
Sbjct:   60 VPDLPPTVAAIKNPTSKIVYDEHNHERYPPGDPSKRAFAYFVLTGGRFVYASLMRLLILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEDDISLANSVDLGSLRDPQQDAERVKNPEWLVVIGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPTYSFLEENKLLIG 258          
BLAST of CF831960 vs. ExPASy Swiss-Prot
Match: UCRI4_TOBAC (Cytochrome b-c1 complex subunit Rieske-4, mitochondrial OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 387.882 bits (995), Expect = 3.500e-107
Identity = 184/199 (92.46%), Postives = 195/199 (97.99%), Query Frame = -2
Query:  200 VPGVPATVAAGKNPTSKIVYDEYNHERYPPGDPSKRAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPSYSFLDENKMLIG 796
            VP +P TVAA KNPTSKIVYDE+NHERYPPGDPSKRAFAYFVLTGGRFVYASL+RLLILKFVLSMSASKDVLA+ASLEVDLSSIEPG+TVTVKWRGKPVFIRRRTE+DI LANSVDLGSLRDPQQDAERVK+PEWLVV+GVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVP+YSFL+ENK+LIG
Sbjct:   38 VPDLPPTVAAIKNPTSKIVYDEHNHERYPPGDPSKRAFAYFVLTGGRFVYASLVRLLILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEDDINLANSVDLGSLRDPQQDAERVKSPEWLVVIGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPTYSFLEENKLLIG 236          
BLAST of CF831960 vs. ExPASy Swiss-Prot
Match: UCRI2_TOBAC (Cytochrome b-c1 complex subunit Rieske-2, mitochondrial OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 387.882 bits (995), Expect = 3.500e-107
Identity = 184/199 (92.46%), Postives = 195/199 (97.99%), Query Frame = -2
Query:  200 VPGVPATVAAGKNPTSKIVYDEYNHERYPPGDPSKRAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPSYSFLDENKMLIG 796
            VP +P TVAA KNPTSKIVYDE+NHERYPPGDPSKRAFAYFVLTGGRFVYASL+RLLILKFVLSMSASKDVLA+ASLEVDLSSIEPG+TVTVKWRGKPVFIRRRTE+DI LANSVDLGSLRDPQQDAERVK+PEWLVV+GVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVP+YSFL+ENK+LIG
Sbjct:   74 VPDLPPTVAAIKNPTSKIVYDEHNHERYPPGDPSKRAFAYFVLTGGRFVYASLVRLLILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEDDINLANSVDLGSLRDPQQDAERVKSPEWLVVIGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPTYSFLEENKLLIG 272          
BLAST of CF831960 vs. ExPASy Swiss-Prot
Match: UCRI3_TOBAC (Cytochrome b-c1 complex subunit Rieske-3, mitochondrial OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 384.8 bits (987), Expect = 2.963e-106
Identity = 183/199 (91.96%), Postives = 194/199 (97.49%), Query Frame = -2
Query:  200 VPGVPATVAAGKNPTSKIVYDEYNHERYPPGDPSKRAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPSYSFLDENKMLIG 796
            V  +PATVAA KNP+SKIVYD+ NHERYPPGDPSKRAFAYFVLTGGRFVYASL+RLLILKFVLSMSASKDVLA+ASLEVDLSSIEPG+TVTVKWRGKPVFIRRRTEEDI LANSVDLGSLRDPQQDAERVKNPEWLVV+GVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVP+YSF++ENK+LIG
Sbjct:   70 VSDLPATVAAIKNPSSKIVYDDSNHERYPPGDPSKRAFAYFVLTGGRFVYASLVRLLILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEEDINLANSVDLGSLRDPQQDAERVKNPEWLVVIGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPTYSFMEENKLLIG 268          
BLAST of CF831960 vs. ExPASy Swiss-Prot
Match: UCRI5_TOBAC (Cytochrome b-c1 complex subunit Rieske-5, mitochondrial OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 383.645 bits (984), Expect = 6.600e-106
Identity = 182/199 (91.46%), Postives = 194/199 (97.49%), Query Frame = -2
Query:  200 VPGVPATVAAGKNPTSKIVYDEYNHERYPPGDPSKRAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPSYSFLDENKMLIG 796
            V  +PATVAA KNP+SKIVYD+ NHERYPPGDPSKRAFAYFVLTGGRFVYASL+RLLILKFVLSMSASKDVLA+ASLEVDLSSIEPG+TVTVKWRGKPVFIRRRT+EDI LANSVDLGSLRDPQQDAERVKNPEWLVV+GVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVP+YSF++ENK+LIG
Sbjct:   70 VSDLPATVAAIKNPSSKIVYDDSNHERYPPGDPSKRAFAYFVLTGGRFVYASLVRLLILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTDEDINLANSVDLGSLRDPQQDAERVKNPEWLVVIGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPTYSFMEENKLLIG 268          
BLAST of CF831960 vs. ExPASy Swiss-Prot
Match: UCRI_SOLTU (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Solanum tuberosum GN=FES1 PE=1 SV=1)

HSP 1 Score: 383.259 bits (983), Expect = 8.620e-106
Identity = 183/199 (91.96%), Postives = 194/199 (97.49%), Query Frame = -2
Query:  200 VPGVPATVAAGKNPTSKIVYDEYNHERYPPGDPSKRAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPSYSFLDENKMLIG 796
            V  +PATVAA KNP+SKIVYD+ NHERYPPGDPSKRAFAYFVLTGGRFVYAS +RLLILKFVLSMSASKDVLA+ASLEVDLSSIEPGSTVTVKWRGKPVFIRRRT++DIKLANSVDLG+LRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVP+YSFL+ENK+LIG
Sbjct:   67 VSDLPATVAAIKNPSSKIVYDDSNHERYPPGDPSKRAFAYFVLTGGRFVYASSVRLLILKFVLSMSASKDVLALASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTDDDIKLANSVDLGTLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPTYSFLEENKLLIG 265          
BLAST of CF831960 vs. ExPASy Swiss-Prot
Match: UCRI_MAIZE (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Zea mays PE=2 SV=1)

HSP 1 Score: 375.941 bits (964), Expect = 1.376e-103
Identity = 174/196 (88.78%), Postives = 191/196 (97.45%), Query Frame = -2
Query:  200 VPATVAAGKNPTSKIVYDEYNHERYPPGDPSKRAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPSYSFLDENKMLIG 787
            +PATVAA KNP  K+VYDEYNHERYPPGDPSKRAFAYFVL+GGRF+YASL+RLL+LKFVLSMSASKDVLA+ASLEVDLSSIEPG+TVTVKWRGKPVFIRRRTE+DIKLANSVD+ SLR P+QDAERVKNPEWLVV+GVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAP+NLEVP+YSFL+ENK+L+G
Sbjct:   78 LPATVAAVKNPNPKVVYDEYNHERYPPGDPSKRAFAYFVLSGGRFIYASLLRLLVLKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEDDIKLANSVDVASLRHPEQDAERVKNPEWLVVIGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPFNLEVPTYSFLEENKLLVG 273          
BLAST of CF831960 vs. ExPASy Swiss-Prot
Match: UCRI_NEUCR (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Neurospora crassa GN=NCU06606 PE=3 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 3.672e-56
Identity = 99/162 (61.11%), Postives = 128/162 (79.01%), Query Frame = -2
Query:  200 FAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPSYSFLDENKMLIG 685
            F+YF++     + A+  +  I +F+ +MSAS DVLAMA +EVDL++I  G  V +KWRGKPVFIR RT  +I+ AN V++ +LRDP+ DA+RVK PEWLV++GVCTHLGC+P+  AGD+GGWFCPCHGSHYDISGRIRKGPAP NLE+P Y F +E K++IG
Sbjct:   70 FSYFMVGTMGAITAAGAKSTIQEFLKNMSASADVLAMAKVEVDLNAIPEGKNVIIKWRGKPVFIRHRTPAEIEEANKVNVATLRDPETDADRVKKPEWLVMLGVCTHLGCVPIGEAGDYGGWFCPCHGSHYDISGRIRKGPAPLNLEIPLYEFPEEGKLVIG 231          
BLAST of CF831960 vs. ExPASy Swiss-Prot
Match: UCRI_YEAST (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Saccharomyces cerevisiae GN=RIP1 PE=1 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 3.109e-55
Identity = 95/164 (57.93%), Postives = 132/164 (80.49%), Query Frame = -2
Query:  200 RAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPSYSFLDENKMLIG 691
            R++AYF++     + ++  +  +  F+ SM+A+ DVLAMA +EV+L++I  G  V VKW+GKPVFIR RT  +I+ ANSVD+ +L+DPQ DA+RVK+P+WL+++G+CTHLGC+P+  AGDFGGWFCPCHGSHYDISGRIRKGPAP NLE+P+Y F D +K+++G
Sbjct:   53 RSYAYFMVGAMGLLSSAGAKSTVETFISSMTATADVLAMAKVEVNLAAIPLGKNVVVKWQGKPVFIRHRTPHEIQEANSVDMSALKDPQTDADRVKDPQWLIMLGICTHLGCVPIGEAGDFGGWFCPCHGSHYDISGRIRKGPAPLNLEIPAYEF-DGDKVIVG 215          
BLAST of CF831960 vs. ExPASy Swiss-Prot
Match: UCRI_SAISC (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Saimiri sciureus GN=UQCRFS1 PE=3 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 4.963e-53
Identity = 88/166 (53.01%), Postives = 124/166 (74.70%), Query Frame = -2
Query:  200 SKRAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPSYSFLDENKMLIG 697
            +++ F+Y V            + ++ +F+ SMSAS DVLAM+ +E+ LS I  G  +  KWRGKP+F+R RT+++I+   +V+L  LRDPQ D +RVK PEW++++GVCTHLGC+P+ NAGDFGG++CPCHGSHYD SGRIRKGPAP NLEVP+Y FL ++ +++G
Sbjct:  109 ARKVFSYMVTATTAVGVTYAAKSIVTQFISSMSASADVLAMSKIEIKLSDIPEGKNMAFKWRGKPLFVRHRTQKEIEQEAAVELSQLRDPQHDLDRVKKPEWMILIGVCTHLGCVPIANAGDFGGYYCPCHGSHYDASGRIRKGPAPLNLEVPTYEFLSDDMVVVG 274          
The following BLAST results are available for this feature:
BLAST of CF831960 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
UCRI1_TOBAC1.571e-10792.96Cytochrome b-c1 complex subunit Rieske-1, mitochon... [more]
UCRI4_TOBAC3.500e-10792.46Cytochrome b-c1 complex subunit Rieske-4, mitochon... [more]
UCRI2_TOBAC3.500e-10792.46Cytochrome b-c1 complex subunit Rieske-2, mitochon... [more]
UCRI3_TOBAC2.963e-10691.96Cytochrome b-c1 complex subunit Rieske-3, mitochon... [more]
UCRI5_TOBAC6.600e-10691.46Cytochrome b-c1 complex subunit Rieske-5, mitochon... [more]
UCRI_SOLTU8.620e-10691.96Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_MAIZE1.376e-10388.78Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_NEUCR3.672e-5661.11Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_YEAST3.109e-5557.93Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_SAISC4.963e-5353.01Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01B12_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831960 ID=CF831960; Name=CF831960; organism=Citrus sinensis; type=EST; length=797bp
TTTTTTTTTTTTTTTAGGTTAAAAGACAATGTGTCAAAACCAGGCCACTT
ATTCTGAGTTGCAGTATCCCAACCCCAATGAAAGGGTGGCAAGACACAAA
GATAGGCATTTATCTTCGACATTATCTGATAAAATATTTTAAAAAAAAAT
GAGATCCCGAATAACCATGGATCACCGGGACAGGACGTCACACTTATCAA
CCAATGAGCATCTTGTTCTCATCCAAGAAGGAGTAAGAGGGTACTTCCAA
ATTGTATGGTGCTGGTCCCTTGCGAATCCTGCCAGAGATATCGTAATGAG
AACCATGGCAAGGGCAAAACCATCCACCAAAGTCACCAGCATTTGGCAAA
GGAATGCAACCAAGATGTGTGCAGACCCCAACAACTACAAGCCACTCCGG
GTTTTTAACCCTCTCAGCGTCTTGCTGAGGATCACGAAGAGATCCCAAAT
CAACACTGTTGGCCAGCTTGATATCTTCCTCAGTCCGACGTCTGATGAAA
ACTGGCTTGCCCCGCCACTTAACAGTCACTGTGCTGCCTGGCTCAATGCT
GGACAGATCAACCTCAAGAGAGGCCATAGCAAGAACATCCTTACTCGCTG
ACATGCTCAGTACAAATTTAAGGATAAGTAGACGGATGAGTGAAGCATAC
ACAAACCTACCACCAGTCAGGACAAAGTAGGCAAATGCCCGCTTGCTGGG
GTCACCTGGAGGATAACGTTCATGATTGTATTCATCATATACTATCTTAG
AAGTGGGATTCTTACCAGCTGCCACTGTTGCTGGAACACCTGGAACC
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