CF832001

Overview
NameCF832001
Unique NameCF832001
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length811
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7368 contig Csv1_Contig7368:940..1750. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832001 vs. ExPASy Swiss-Prot
Match: FLA17_ARATH (Fasciclin-like arabinogalactan protein 17 OS=Arabidopsis thaliana GN=FLA17 PE=2 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 1.031e-61
Identity = 117/152 (76.97%), Postives = 128/152 (84.21%), Query Frame = -1
Query:  356 VLTVLAPNDEAMAKLTTDQLSEPGAPEQIIYYHIIPEYQTEESMYNSVRRFGKVKYDTLRLPHKVTAQEADGSVKFGTSDGSAYLFDPDIYTDGRISVQGIDGVLFPEEEXXXXXXXXXXXXXXXPRRGKLMEVACRMLGAVGQDSHFTTCQ 811
            VLTVLAPNDEAMAKLTTDQLSEPGAPEQI+YYHIIPEYQTEESMYNSVRRFGKVK+DTLR PHKV A+EADGSVKFG  + SAYLFDPDIYTDGRISVQGIDGVLFP+EE               PRRGKL+EVAC MLGA G+D++ + C+
Sbjct:  307 VLTVLAPNDEAMAKLTTDQLSEPGAPEQIVYYHIIPEYQTEESMYNSVRRFGKVKFDTLRFPHKVAAKEADGSVKFGDGEKSAYLFDPDIYTDGRISVQGIDGVLFPQEEEVVESVKKPVKKIVQPRRGKLLEVACSMLGAFGKDTYLSKCR 458          
BLAST of CF832001 vs. ExPASy Swiss-Prot
Match: FLA18_ARATH (Fasciclin-like arabinogalactan protein 18 OS=Arabidopsis thaliana GN=FLA18 PE=2 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 5.117e-61
Identity = 119/153 (77.78%), Postives = 128/153 (83.66%), Query Frame = -1
Query:  359 VLTVLAPNDEAMAKLTTDQLSEPGAPEQIIYYHIIPEYQTEESMYNSVRRFGKVKYDTLRLPHKVTAQEADGSVKFGTSDGSAYLFDPDIYTDGRISVQGIDGVLFPE--EEXXXXXXXXXXXXXXXPRRGKLMEVACRMLGAVGQDSHFTTC 811
            VLTVLAPNDEAM KLTTDQLSEPGAPEQI+YYHIIPEYQTEESMYNSVRRFGKVKY+TLR PHKV A+EADGSVKFG+ D SAYLFDPDIYTDGRISVQGIDGVLFPE  EE               PRRGKL+EVAC MLGA+G+DS+ + C
Sbjct:  310 VLTVLAPNDEAMGKLTTDQLSEPGAPEQIMYYHIIPEYQTEESMYNSVRRFGKVKYETLRFPHKVGAKEADGSVKFGSGDRSAYLFDPDIYTDGRISVQGIDGVLFPEEKEEETVKKPTGPVKKVVQPRRGKLLEVACSMLGAIGKDSYLSRC 462          
BLAST of CF832001 vs. ExPASy Swiss-Prot
Match: FLA15_ARATH (Fasciclin-like arabinogalactan protein 15 OS=Arabidopsis thaliana GN=FLA15 PE=2 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 2.150e-59
Identity = 120/154 (77.92%), Postives = 125/154 (81.17%), Query Frame = -1
Query:  356 VLTVLAPNDEAMAKLTTDQLSEPGAPEQIIYYHIIPEYQTEESMYNSVRRFGKVKYDTLRLPHKVTAQEADGSVKFGTSDGSAYLFDPDIYTDGRISVQGIDGVLFPEEE--XXXXXXXXXXXXXXXPRRGKLMEVACRMLGAVGQDSHFTTCQ 811
            VLTVLAPNDEAMAKLTTDQLSEPGAPEQI+YYHIIPEYQTEESMYNSVRRFGK++YD+LR PHKV AQEADGSVKFG  DGSAYLFDPDIYTDGRISVQGIDGVLFPEE+                 PRRGKLMEVAC MLG     S F TCQ
Sbjct:  288 VLTVLAPNDEAMAKLTTDQLSEPGAPEQIMYYHIIPEYQTEESMYNSVRRFGKIRYDSLRFPHKVEAQEADGSVKFGHGDGSAYLFDPDIYTDGRISVQGIDGVLFPEEKTPVEKKTGVPVVKKAPKPRRGKLMEVACTMLG-----SQFPTCQ 436          
BLAST of CF832001 vs. ExPASy Swiss-Prot
Match: FLA16_ARATH (Fasciclin-like arabinogalactan protein 16 OS=Arabidopsis thaliana GN=FLA16 PE=2 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 3.667e-59
Identity = 119/155 (76.77%), Postives = 124/155 (80.00%), Query Frame = -1
Query:  356 VLTVLAPNDEAMAKLTTDQLSEPGAPEQIIYYHIIPEYQTEESMYNSVRRFGKVKYDTLRLPHKVTAQEADGSVKFGTSDGSAYLFDPDIYTDGRISVQGIDGVLFPEEE---XXXXXXXXXXXXXXXPRRGKLMEVACRMLGAVGQDSHFTTCQ 811
            VLTVLAPNDEAMAKLTTDQLSEPGAPEQI+YYHIIPEYQTEESMYN+VRRFGKVKYD+LR PHKV AQEADGSVKFG  DGSAYLFDPDIYTDGRISVQGIDGVLFP+EE                   RRGKLMEVACRM+G     S F  CQ
Sbjct:  296 VLTVLAPNDEAMAKLTTDQLSEPGAPEQIMYYHIIPEYQTEESMYNAVRRFGKVKYDSLRFPHKVLAQEADGSVKFGHGDGSAYLFDPDIYTDGRISVQGIDGVLFPKEETPATEIKPAAPVVKKVSKSRRGKLMEVACRMMG-----SRFIPCQ 445          
The following BLAST results are available for this feature:
BLAST of CF832001 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
FLA17_ARATH1.031e-6176.97Fasciclin-like arabinogalactan protein 17 OS=Arabi... [more]
FLA18_ARATH5.117e-6177.78Fasciclin-like arabinogalactan protein 18 OS=Arabi... [more]
FLA15_ARATH2.150e-5977.92Fasciclin-like arabinogalactan protein 15 OS=Arabi... [more]
FLA16_ARATH3.667e-5976.77Fasciclin-like arabinogalactan protein 16 OS=Arabi... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_01C11_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832001 ID=CF832001; Name=CF832001; organism=Citrus sinensis; type=EST; length=811bp
TTTTTTTTTTTTTTTTTATGAAAATTTGAGTTGATTCATTCGCCAGCAGG
CAAGAGGAACACAACCATTGACACAGAGCAAAGGCTGTTCATCAATCACC
GTGCACACAGTGACGGTAGCCAGTGAGTCTTTACTTAAAAAAAACAATTA
AAAAATGATATGTAATTACAGTATTTATAAAAAAAAAGAAAAAGAAAAAA
AACAACAACAAACTCTTCTCTTTAGTGGGATTATTCATTGTCGACGTATC
CTGATTGATATCCCCTTCTCTTTAGTTTACAATCTTCCTACAACAGTTTA
TGATTGTTTACACGGTTTCGGGTTTTCTTATTTTTTTGATTTAATTATGA
GTTTATTGACATGTAGTGAAATGTGAATCTTGCCCAACAGCTCCAAGCAT
TCTACATGCTACCTCCATTAATTTGCCTCTTCTGGGCTTGGTGACAACTT
TAACGGCAGCCGGTTTCTTAACCGTTGGAGTCTCTTCCTCTGGGAACAAA
ACCCCATCAATCCCTTGAACCGAAATCCTGCCATCAGTATAAATATCCGG
GTCAAACAAATAAGCCGACCCGTCACTCGTCCCGAATTTCACCGACCCAT
CAGCCTCTTGCGCCGTTACTTTATGCGGCAACCTTAACGTATCGTACTTC
ACTTTCCCAAATCTCCTAACGGAGTTGTACATGCTCTCCTCCGTTTGATA
CTCCGGAATAATGTGGTAATAAATAATCTGCTCCGGCGCCCCCGGTTCGC
TCAATTGATCCGTTGTCAGCTTCGCCATCGCCTCGTCGTTCGGGGCCAGC
ACCGTCAGCAC
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