CF832019

Overview
NameCF832019
Unique NameCF832019
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length705
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4194 contig Csv1_Contig4194:35..738. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832019 vs. ExPASy Swiss-Prot
Match: RS172_ARATH (40S ribosomal protein S17-2 OS=Arabidopsis thaliana GN=RPS17B PE=2 SV=3)

HSP 1 Score: 226.483 bits (576), Expect = 1.106e-58
Identity = 115/128 (89.84%), Postives = 120/128 (93.75%), Query Frame = 1
Query:   70 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMNRIHKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMSDISGLVEVEPQSMITP 453
            MGRVRTKTVKKSSRQVIE+YYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLM RI KGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETL+MLA+LGMSD SG+  VEPQ  + P
Sbjct:    1 MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTSGISAVEPQQAMAP 128          
BLAST of CF832019 vs. ExPASy Swiss-Prot
Match: RS173_ARATH (40S ribosomal protein S17-3 OS=Arabidopsis thaliana GN=RPS17C PE=2 SV=3)

HSP 1 Score: 224.942 bits (572), Expect = 3.218e-58
Identity = 113/131 (86.26%), Postives = 122/131 (93.13%), Query Frame = 1
Query:   70 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMNRIHKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMSDISGLVEVEPQSMITPPVF 462
            MGRVRTKTVKKSSRQVIE+YYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLM RI KGPVRGISLKLQEEERERRMDFVPDESAIK D++KVDKETL+MLA+LGMSDI+G+ +VE Q  + P VF
Sbjct:    1 MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKIDDVKVDKETLEMLASLGMSDIAGISQVETQQAMAPAVF 131          
BLAST of CF832019 vs. ExPASy Swiss-Prot
Match: RS174_ARATH (40S ribosomal protein S17-4 OS=Arabidopsis thaliana GN=RPS17D PE=2 SV=3)

HSP 1 Score: 224.557 bits (571), Expect = 4.203e-58
Identity = 114/128 (89.06%), Postives = 119/128 (92.97%), Query Frame = 1
Query:   70 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMNRIHKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMSDISGLVEVEPQSMITP 453
            MGRVRTKTVKKSSRQVIE+YYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLM RI KGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETL+MLA+LGMSD  G+  VEPQ  + P
Sbjct:    1 MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTPGISAVEPQQAMAP 128          
BLAST of CF832019 vs. ExPASy Swiss-Prot
Match: RS171_ARATH (40S ribosomal protein S17-1 OS=Arabidopsis thaliana GN=RPS17A PE=1 SV=3)

HSP 1 Score: 223.402 bits (568), Expect = 9.363e-58
Identity = 115/132 (87.12%), Postives = 121/132 (91.67%), Query Frame = 1
Query:   70 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMNRIHKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMSDISGLVEVEPQSMITP-PVF 462
            MGRVRTKTVKKSSRQVIE+YYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLM RI KGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETL+MLA+LGMSD  G+  V+PQ  + P P F
Sbjct:    1 MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTLGISAVDPQQAMAPIPAF 132          
BLAST of CF832019 vs. ExPASy Swiss-Prot
Match: RS17_SOLLC (40S ribosomal protein S17 OS=Solanum lycopersicum GN=RPS17 PE=2 SV=3)

HSP 1 Score: 218.394 bits (555), Expect = 3.012e-56
Identity = 113/133 (84.96%), Postives = 122/133 (91.73%), Query Frame = 1
Query:   70 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMNRIHKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMSDISGLVE--VEPQSMITPPVF 462
            MGRVRTKTVKKSSRQVIERYYS+MTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLM RI KGPVRGISLKLQEEERERRMDFVPDESAIKTD I+VDKETLDML+ALGMSD+ G+V+   EPQ++   P +
Sbjct:    1 MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDLIEVDKETLDMLSALGMSDLPGVVKQAAEPQAVAALPSY 133          
BLAST of CF832019 vs. ExPASy Swiss-Prot
Match: RS17_THEPA (40S ribosomal protein S17 OS=Theileria parva GN=RPS17 PE=3 SV=3)

HSP 1 Score: 158.303 bits (399), Expect = 3.699e-38
Identity = 74/112 (66.07%), Postives = 96/112 (85.71%), Query Frame = 1
Query:   70 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMNRIHKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMS 405
            MGRVRTKTVK+++RQ++E+YY ++ LDF  NKK+ EEVA+IPSKR+RNK+AGF THLM RI KGPVRGISLKLQEEERERRMD++P++S ++   I+VD++T DML  L +S
Sbjct:    1 MGRVRTKTVKRAARQIVEKYYGKLGLDFQYNKKVAEEVALIPSKRMRNKVAGFITHLMRRIQKGPVRGISLKLQEEERERRMDYIPEKSELEVPVIQVDQDTADMLNFLKIS 112          
BLAST of CF832019 vs. ExPASy Swiss-Prot
Match: RS17_THEAN (40S ribosomal protein S17 OS=Theileria annulata GN=RPS17 PE=2 SV=3)

HSP 1 Score: 158.303 bits (399), Expect = 3.699e-38
Identity = 74/112 (66.07%), Postives = 96/112 (85.71%), Query Frame = 1
Query:   70 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMNRIHKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMS 405
            MGRVRTKTVK+++RQ++E+YY ++ LDF  NKK+ EEVA+IPSKR+RNK+AGF THLM RI KGPVRGISLKLQEEERERRMD++P++S ++   I+VD++T DML  L +S
Sbjct:    1 MGRVRTKTVKRAARQIVEKYYGKLGLDFQYNKKVAEEVALIPSKRMRNKVAGFITHLMRRIQKGPVRGISLKLQEEERERRMDYIPEKSELEVPVIQVDQDTADMLNFLKIS 112          
BLAST of CF832019 vs. ExPASy Swiss-Prot
Match: RS17B_SCHPO (40S ribosomal protein S17-B OS=Schizosaccharomyces pombe GN=rps17b PE=1 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 3.699e-38
Identity = 78/118 (66.10%), Postives = 97/118 (82.20%), Query Frame = 1
Query:   70 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMNRIHKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMSDISGLV 423
            MGRVRTKT K++SR VIE+YY R+TLDF TNK+I++EVAII SKRLRNKIAG++THLM RI +GPVRGIS KLQEEERER+  +VP+ S ++ D+I VD++T DML ALG   I  +V
Sbjct:    1 MGRVRTKTTKRASRVVIEKYYPRLTLDFQTNKRIVDEVAIIASKRLRNKIAGYTTHLMKRIQRGPVRGISFKLQEEERERKDQYVPEVSELEKDKINVDQDTKDMLKALGYDSIPTVV 118          
BLAST of CF832019 vs. ExPASy Swiss-Prot
Match: RS17_BOVIN (40S ribosomal protein S17 OS=Bos taurus GN=RPS17 PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.406e-37
Identity = 75/122 (61.48%), Postives = 98/122 (80.33%), Query Frame = 1
Query:   70 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMNRIHKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMSDISGLVEVEP 435
            MGRVRTKTVKK++R +IE+YY+R+  DFHTNK++ EE+AIIPSK+LRNKIAG+ THLM RI +GPVRGIS+KLQEEERERR ++VP+ SA+  + I+VD +T +ML  L    +S L   +P
Sbjct:    1 MGRVRTKTVKKAARVIIEKYYTRLDNDFHTNKRVCEEIAIIPSKKLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDQEIIEVDPDTKEMLKLLDFGSLSNLQVTQP 122          
BLAST of CF832019 vs. ExPASy Swiss-Prot
Match: RS17_PIG (40S ribosomal protein S17 OS=Sus scrofa GN=RPS17 PE=2 SV=3)

HSP 1 Score: 155.992 bits (393), Expect = 1.836e-37
Identity = 75/122 (61.48%), Postives = 98/122 (80.33%), Query Frame = 1
Query:   70 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMNRIHKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMSDISGLVEVEP 435
            MGRVRTKTVKK++R +IE+YY+R+  DFHTNK++ EE+AIIPSK+LRNKIAG+ THLM RI +GPVRGIS+KLQEEERERR ++VP+ SA+  + I+VD +T +ML  L    +S L   +P
Sbjct:    1 MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDQEIIEVDPDTKEMLKLLDFGSLSNLQVTQP 122          
The following BLAST results are available for this feature:
BLAST of CF832019 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
RS172_ARATH1.106e-5889.8440S ribosomal protein S17-2 OS=Arabidopsis thalian... [more]
RS173_ARATH3.218e-5886.2640S ribosomal protein S17-3 OS=Arabidopsis thalian... [more]
RS174_ARATH4.203e-5889.0640S ribosomal protein S17-4 OS=Arabidopsis thalian... [more]
RS171_ARATH9.363e-5887.1240S ribosomal protein S17-1 OS=Arabidopsis thalian... [more]
RS17_SOLLC3.012e-5684.9640S ribosomal protein S17 OS=Solanum lycopersicum ... [more]
RS17_THEPA3.699e-3866.0740S ribosomal protein S17 OS=Theileria parva GN=RP... [more]
RS17_THEAN3.699e-3866.0740S ribosomal protein S17 OS=Theileria annulata GN... [more]
RS17B_SCHPO3.699e-3866.1040S ribosomal protein S17-B OS=Schizosaccharomyces... [more]
RS17_BOVIN1.406e-3761.4840S ribosomal protein S17 OS=Bos taurus GN=RPS17 P... [more]
RS17_PIG1.836e-3761.4840S ribosomal protein S17 OS=Sus scrofa GN=RPS17 P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01C22_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01C22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832019 ID=CF832019|Name=CF832019|organism=Citrus sinensis|type=EST|length=705bp
CGACATCTCACCCTTTTAATGCTTCCCGTCTTTGTCTTCTTCAAGACAGC
AGCCCTTTCTTAAACTGAAATGGGTCGTGTTCGTACCAAGACCGTGAAGA
AGTCCTCTCGCCAGGTGATTGAGAGGTACTACTCAAGAATGACACTGGAC
TTCCATACCAACAAGAAAATTTTGGAGGAGGTTGCTATCATCCCCTCGAA
GAGGCTGCGTAACAAAATTGCTGGGTTCTCAACCCATTTGATGAATAGGA
TTCACAAGGGTCCAGTTCGTGGAATCTCCCTTAAATTGCAGGAAGAGGAG
CGCGAACGCCGCATGGACTTTGTGCCTGATGAGTCAGCTATTAAGACTGA
TGAAATTAAGGTTGACAAGGAAACCTTGGATATGCTTGCTGCTCTTGGCA
TGTCCGACATTTCTGGGCTTGTTGAAGTTGAGCCACAGAGCATGATTACT
CCTCCAGTTTTTGGTCGGGGTGGTGGCAGGAGGTACTGAGTTAATTGAGG
CTTTGTGGCTCAATCAAGAATGAGAAGTTTAGGTTCTTATTAATCAGCAC
TTCTTGTGTTTGTTATGAATGCTTTTGTGACTAGTTTTCTTTACTATTTT
AAGAAGGGTGTTTAGTTAAAACTTGAACTCTGGCATCATACTTTAGTTGA
TTTAATGGACTTGTTTTGTCTTTTCATTTTATTTGTTTAACAAAAAAAAA
AAAAA
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