CF832067

Overview
NameCF832067
Unique NameCF832067
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length596
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10323 contig Csv1_Contig10323:324..919. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832067 vs. ExPASy Swiss-Prot
Match: PRF1_SOLLC (36.4 kDa proline-rich protein OS=Solanum lycopersicum GN=TPRP-F1 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.855e-15
Identity = 46/112 (41.07%), Postives = 57/112 (50.89%), Query Frame = -3
Query:  268 PPVLPNPPSA--RKXXXXXXXXXXPAVATCPIDTLKLGACVDLLGGLVHIGLGDPVVNQCCPVLQGLVELEAAVXXXXXXXXXXXXXXXXXXXXXXXLV-TCGKTPPAGFTC 594
            PP++P PP+               PA  TCPID LKLGACVD+LGGL+HIG+G      CCP+L GLV+L+AA+                       L+  CGK PP  F C
Sbjct:  232 PPIVPTPPTPCPPPPPPPAIIPSPPAQPTCPIDALKLGACVDVLGGLIHIGIGGSAKQTCCPLLGGLVDLDAAICLCTTIRLKLLNINIILPIALQVLIDDCGKYPPKDFKC 343          
The following BLAST results are available for this feature:
BLAST of CF832067 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PRF1_SOLLC1.855e-1541.0736.4 kDa proline-rich protein OS=Solanum lycopersi... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_01E05_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832067 ID=CF832067; Name=CF832067; organism=Citrus sinensis; type=EST; length=596bp
TTTTTTTTTTTTTTTTTGAGGAGGAAAATCAAATAATTGCTGCCTTGCCT
TTGACATTGAAAACACACATACAATGCGACAAATCATATCCAAACAAATG
GGTGTACAATTAAATGTGACCAAACATTACAATCCCAACAATGAGAGAAA
CACCGAGAGAGTGGGGGAGAGAGAAAAAGAAACAAACAAATAAGTCTCGA
CATCCTTTCATGTCGATTTCTTCCTTCAGTATCCATCATCAATCTACCAA
CCTTAGATCTAAAGAGTGCAAGTGAAACCAGCGGGTGGTGTCTTTCCGCA
AGTGACAAGAAGCTGAAGAGCAAGGGGAAGATAGATGTTAAGATTAAGCA
GCTTGAGCTTGAGAGTAGTGCACAAGCAGACAGCAGCTTCTAACTCAACA
AGTCCTTGTAGAACTGGGCAGCATTGGTTAACAACTGGGTCACCAAGACC
AATGTGAACCAACCCACCAAGAAGGTCCACACAAGCACCCAATTTGAGGG
TGTCAATGGGGCATGTGGCAACCGCTGGTGGAGGTGGTGTGTATGAACAT
GGGCATGGCTTCCTAGCACTTGGTGGATTAGGGAGAACTGGAGGCA
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