CF832139

Overview
NameCF832139
Unique NameCF832139
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length566
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1006 contig Csv1_Contig1006:1..566. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832139 vs. ExPASy Swiss-Prot
Match: RAP1_ARATH (Transcription factor MYC2 OS=Arabidopsis thaliana GN=RAP1 PE=1 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 5.347e-30
Identity = 69/181 (38.12%), Postives = 107/181 (59.12%), Query Frame = 2
Query:    5 IVQNRPEWWVYSIFWQPLKDVNGRLVLSWGDGYFRGSKDFATRAAAGKQGAGNEPKFGFFLERKKVSKEVQ-VHFGEDMDLDRMVDGDVTDGEWYYTVSVTRSFAIGDGSALGRVFSSGDYVWLTGDHELQLYECERVKEARMHGIQTLVCVSTACGVVELGSSDLIKEDWSLVQLAKSLF 544
            +++   E W Y+IFWQP  D +G  VL WGDGY++G +D A           + P    +  RKKV +E+  +  G     D  VD +VTD EW++ VS+T+SFA G G A G+ F++G+ VW++G  +L    CER K+  + G+ T+ C+ +A GVVE+GS++ I++   L+   + LF
Sbjct:   75 LIEGTHEGWTYAIFWQPSYDFSGASVLGWGDGYYKGEEDKANPRRRSSSPPFSTPADQEY--RKKVLRELNSLISGGVAPSDDAVDEEVTDTEWFFLVSMTQSFACGAGLA-GKAFATGNAVWVSGSDQLSGSGCERAKQGGVFGMHTIACIPSANGVVEVGSTEPIRQSSDLINKVRILF 252          
BLAST of CF832139 vs. ExPASy Swiss-Prot
Match: BH004_ARATH (Transcription factor MYC4 OS=Arabidopsis thaliana GN=BHLH4 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 2.746e-26
Identity = 64/188 (34.04%), Postives = 106/188 (56.38%), Query Frame = 2
Query:    5 IVQNRPEWWVYSIFWQPL-------KDVNGRLVLSWGDGYFRGSKDFATRAAAGKQGAGNEPKFGFFLERKKVSKEVQ-VHFGEDMDLDRMVDGDVTDGEWYYTVSVTRSFAIGDGSALGRVFSSGDYVWLTGDHELQLYECERVKEARMHGIQTLVCVSTACGVVELGSSDLIKEDWSLVQLAKSLF 544
            +++   E W Y++FWQ          + N  ++L WGDGY++G ++ + +  +    A  +        RK+V +E+  +  G     D   D +VTD EW++ VS+T+SF  G G   G+ FS+ D +WL+G + L    CER ++ +++G+QT+VCV+T  GVVELGSS++I +   LV    + F
Sbjct:   70 LIEGANENWTYAVFWQSSHGFAGEDNNNNNTVLLGWGDGYYKGEEEKSRKKKSNPASAAEQE------HRKRVIRELNSLISGGVGGGDEAGDEEVTDTEWFFLVSMTQSFVKGTGLP-GQAFSNSDTIWLSGSNALAGSSCERARQGQIYGLQTMVCVATENGVVELGSSEIIHQSSDLVDKVDTFF 250          
BLAST of CF832139 vs. ExPASy Swiss-Prot
Match: ATR2_ARATH (Transcription factor ATR2 OS=Arabidopsis thaliana GN=ATR2 PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.666e-23
Identity = 62/186 (33.33%), Postives = 101/186 (54.30%), Query Frame = 2
Query:    5 IVQNRPEWWVYSIFWQPLKDVNGR-----LVLSWGDGYFRGSKDFATRAAAGKQGAGNEPKFGFFLERKKVSKEVQVHFGEDMDL-DRMVDGDVTDGEWYYTVSVTRSFAIGDGSALGRVFSSGDYVWLTGDHELQLYECERVKEARMHGIQTLVCVSTACGVVELGSSDLIKEDWSLVQLAKSLF 544
            ++++  E W Y+IFWQ   D +       ++L WGDGY++G +D        K+   N         RK+V +E+       + + D   D +VTD EW++ VS+T+SF  G G   G  F +   +WL+G   L    CER  + +++G++T+VC++T  GVVELGSS++I +   L+    +LF
Sbjct:   59 LIESAGENWTYAIFWQISHDFDSSTGDNTVILGWGDGYYKGEED--------KEKKKNNTNTAEQEHRKRVIRELNSLISGGIGVSDESNDEEVTDTEWFFLVSMTQSFVNGVGLP-GESFLNSRVIWLSGSGALTGSGCERAGQGQIYGLKTMVCIATQNGVVELGSSEVISQSSDLMHKVNNLF 235          
BLAST of CF832139 vs. ExPASy Swiss-Prot
Match: BH028_ARATH (Transcription factor bHLH28 OS=Arabidopsis thaliana GN=BHLH28 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.753e-18
Identity = 61/191 (31.94%), Postives = 98/191 (51.31%), Query Frame = 2
Query:    5 IVQNRPEWWVYSIFWQP-LKDVNGRLVLSWGDGYFRGSKDFATRAAAGKQG---AGNEPKFGFFLERKKVSKEVQVHFGEDM------DLDRMVDGDVTDGEWYYTVSVTRSFAIGDGSALGRVFSSGDYVWLTGDHELQLYECERVKEARMHGIQTLVCVSTACGVVELGSSDLIKEDWSLVQLAKSLFG 547
            ++    E W Y+IFW+P   D +G  VL WGDG + G  +  TR    ++    +  E K      R  V +E+ +    +       D+    D +VTD EW++ VS+T SF  G G A G+ F+S + V +TG   +    C+R K+    G+QT++C+ +  GV+EL S++ I+ +  L    + LFG
Sbjct:   41 VLNGTHEPWSYAIFWKPSYDDFSGEAVLKWGDGVYTGGNEEKTRGRLRRKKTILSSPEEKE----RRSNVIRELNLMISGEAFPVVEDDVSDDDDVEVTDMEWFFLVSMTWSFGNGSGLA-GKAFASYNPVLVTGSDLIYGSGCDRAKQGGDVGLQTILCIPSHNGVLELASTEEIRPNSDLFNRIRFLFG 226          
BLAST of CF832139 vs. ExPASy Swiss-Prot
Match: GL3_ARATH (Transcription factor GLABRA 3 OS=Arabidopsis thaliana GN=GL3 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 4.395e-16
Identity = 56/185 (30.27%), Postives = 83/185 (44.86%), Query Frame = 2
Query:   29 WVYSIFWQPLKDVNGRLVLSWGDGYFRGSKDFATRAA-------AGKQGAGNEPKFGFFLERKKVSKEVQVHFGEDMDLDRMVDG------DVTDGEWYYTVSVTRSFAIGDGSALGRVFSSGDYVWLTGDHELQLYECERVKEARMHGIQTLVCVSTACGVVELGSSDLIKEDWSLVQLAKSLF 544
            W Y IFW      +G  VL WGDGY+ G  D  TR         A + G     +     E   V++           + R          D+ D EWYY V ++  F IG+G   GR F++G+ +WL   H        R   A+   ++T+VC     GVVE+G+++ I ED +++Q  K+ F
Sbjct:   27 WSYGIFWSVSASQSG--VLEWGDGYYNG--DIKTRKTIQASEIKADQLGLRRSEQLSELYESLSVAESSSSGVAAGSQVTRRASAAALSPEDLADTEWYYLVCMSFVFNIGEGMP-GRTFANGEPIWLCNAHTADSKVFSRSLLAKSAAVKTVVCFPFLGGVVEIGTTEHITEDMNVIQCVKTSF 206          
BLAST of CF832139 vs. ExPASy Swiss-Prot
Match: BH014_ARATH (Transcription factor bHLH14 OS=Arabidopsis thaliana GN=BHLH14 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 7.496e-16
Identity = 55/183 (30.05%), Postives = 85/183 (46.45%), Query Frame = 2
Query:    2 FIVQNRPEWWVYSIFWQPL-KDVNGRLVLSWGDGYFRGSKDFATRAAAGKQGAGNEPKFGFFLERKKVSKEVQVHFGEDMDLDRMVDGDVTDGEWYYTVSVTRSFAIGDGSALGRVFSSGDYVWLTGDHELQLYECERVKEARMHGIQTLVCVSTACGVVELGSSDLIKEDWSLVQLAKSLFG 547
            F+V+  P+ W Y IFWQ +  D + R  L W DG+F G+K+                           +   + +    ++ + M+DG   D E +Y  S       G+  +  +  S    VWLTG  EL+    ER KEA  HG+ TLV +    G++ELGSS+ I ++ + +   KS+FG
Sbjct:   41 FVVETSPDRWAYVIFWQKMFDDQSDRSYLVWVDGHFCGNKN---------------------------NNSQENYTTNSIECELMMDGG-DDLELFYAASF-----YGEDRSPRKEVSDESLVWLTGPDELRFSNYERAKEAGFHGVHTLVSIPINNGIIELGSSESIIQNRNFINRVKSIFG 190          
BLAST of CF832139 vs. ExPASy Swiss-Prot
Match: TT8_ARATH (Transcription factor TT8 OS=Arabidopsis thaliana GN=TT8 PE=1 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 4.859e-15
Identity = 58/178 (32.58%), Postives = 86/178 (48.31%), Query Frame = 2
Query:   29 WVYSIFWQPLKDVNGRLVLSWGDGYFRGSKDFATRAAAGKQGAGNEPKFGFFLERKKVSKEVQVHF--GEDMDLDRMVDG----DVTDGEWYYTVSVTRSFAIGDGSALGRVFSSGDYVWLTGDHELQLYECERVKEARMHGIQTLVCVSTACGVVELGSSDLIKEDWSLVQLAKSLF 544
            W YS+FWQ       + VL WG+GY+ G+    TR          E      LER +  +E+      GE     R        D+T+ EW+Y + V+ SF    G   G+ ++   +VWL+G +E+      R   A+   IQT+VC+    GVVELG++  ++ED   V+L KS F
Sbjct:   33 WTYSVFWQFCPQ---QRVLVWGNGYYNGA--IKTRKTTQPAEVTAEEAA---LERSQQLRELYETLLAGESTSEARACTALSPEDLTETEWFYLMCVSFSFPPPSGMP-GKAYARRKHVWLSGANEVDSKTFSRAILAKSAKIQTVVCIPMLDGVVELGTTKKVREDVEFVELTKSFF 201          
BLAST of CF832139 vs. ExPASy Swiss-Prot
Match: BH013_ARATH (Transcription factor bHLH13 OS=Arabidopsis thaliana GN=BHLH13 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 6.346e-15
Identity = 61/173 (35.26%), Postives = 85/173 (49.13%), Query Frame = 2
Query:   29 WVYSIFWQPLKDVNGRLVLSWGDGYFRGSKDFATRAAAGKQGAGNEPKFGFFLERKKVSKEVQVHFGEDMDLDRMVDGD-VTDGEWYYTVSVTRSFAIGDGSALGRVFSSGDYVWLTGDHELQLYECERVKEARMHGIQTLVCVSTACGVVELGSSDLIKEDWSLVQLAKSLF 544
            W Y+IFWQ  +   G LVL WGDGY R  K+            G E +    + RK+V +++   FG   + +  +  D VTD E +   S+  SF  G+G   G+ F+S   VWL+         C R   A+  GIQT+V V T  GVVELGS+  + E    +   +SLF
Sbjct:   66 WNYAIFWQISRSKAGDLVLCWGDGYCREPKEGEKSEIVRILSMGREEETHQTM-RKRVLQKLHDLFGGSEEENCALGLDRVTDTEMFLLSSMYFSFPRGEGGP-GKCFASAKPVWLSDVVNSGSDYCVRSFLAKSAGIQTVVLVPTDLGVVELGSTSCLPESEDSILSIRSLF 236          
BLAST of CF832139 vs. ExPASy Swiss-Prot
Match: AIB_ARATH (Transcription factor ABA-INDUCIBLE bHLH-TYPE OS=Arabidopsis thaliana GN=AIB PE=2 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 2.041e-13
Identity = 55/175 (31.43%), Postives = 84/175 (48.00%), Query Frame = 2
Query:   29 WVYSIFWQPLKDVNGRLVLSWGDGYFRGSKDFATRAAAGKQGAGN---EPKFGFFLERKKVSKEVQVHFGEDMDLDRMVDGDVTDGEWYYTVSVTRSFAIGDGSALGRVFSSGDYVWLTGDHELQLYECERVKEARMHGIQTLVCVSTACGVVELGSSDLIKEDWSLVQLAKSLF 544
            W Y+IFWQ     +G+ VL WGDG  R   +             N   E +    + ++ + K  ++  G D D   +    VT  E ++  S+   F  G+G   GR +SSG +VWL+     +   C R   A+  GI+T+V V T  GV+ELGS   + E+  LV+  ++LF
Sbjct:   66 WNYAIFWQQTMSRSGQQVLGWGDGCCREPNEEEESKVVRSYNFNNMGAEEETWQDMRKRVLQKLHRLFGGSDEDNYALSLEKVTATEIFFLASMYFFFNHGEGGP-GRCYSSGKHVWLSDAVNSESDYCFRSFMAKSAGIRTIVMVPTDAGVLELGSVWSLPENIGLVKSVQALF 239          
BLAST of CF832139 vs. ExPASy Swiss-Prot
Match: BH012_ARATH (Transcription factor MYC1 OS=Arabidopsis thaliana GN=BHLH12 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.559e-11
Identity = 56/184 (30.43%), Postives = 81/184 (44.02%), Query Frame = 2
Query:   29 WVYSIFWQPLKDVNGRLVLSWGDGYFRGS-----KDFATRAAAGKQGAGNEPKFGF-FLERKKVSKEVQVHFGEDMDLDR-------MVDGDVTDGEWYYTVSVTRSFAIGDGSAL-GRVFSSGDYVWLTGDHELQLYECERVKEARMHGIQTLVCVSTACGVVELGSSDLIKEDWSLVQLAKS 538
            W Y+IFW       G  VL WG+G + G      K + +    G Q +    K     LE    +     H   + D D        +   D++D EWYY VS+  S+       L GR  ++G+ +WL      +     R   AR   IQT+VC     GV+ELG ++LI ED +L++  KS
Sbjct:   36 WSYAIFWSSSLTQPG--VLEWGEGCYNGDMKKRKKSYESHYKYGLQKSKELRKLYLSMLEGDSGTTVSTTHDNLNDDDDNCHSTSMMLSPDDLSDEEWYYLVSM--SYVFSPSQCLPGRASATGETIWLCNAQYAENKLFSRSLLARSASIQTVVCFPYLGGVIELGVTELISEDHNLLRNIKS 215          
The following BLAST results are available for this feature:
BLAST of CF832139 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
RAP1_ARATH5.347e-3038.12Transcription factor MYC2 OS=Arabidopsis thaliana ... [more]
BH004_ARATH2.746e-2634.04Transcription factor MYC4 OS=Arabidopsis thaliana ... [more]
ATR2_ARATH1.666e-2333.33Transcription factor ATR2 OS=Arabidopsis thaliana ... [more]
BH028_ARATH2.753e-1831.94Transcription factor bHLH28 OS=Arabidopsis thalian... [more]
GL3_ARATH4.395e-1630.27Transcription factor GLABRA 3 OS=Arabidopsis thali... [more]
BH014_ARATH7.496e-1630.05Transcription factor bHLH14 OS=Arabidopsis thalian... [more]
TT8_ARATH4.859e-1532.58Transcription factor TT8 OS=Arabidopsis thaliana G... [more]
BH013_ARATH6.346e-1535.26Transcription factor bHLH13 OS=Arabidopsis thalian... [more]
AIB_ARATH2.041e-1331.43Transcription factor ABA-INDUCIBLE bHLH-TYPE OS=Ar... [more]
BH012_ARATH5.559e-1130.43Transcription factor MYC1 OS=Arabidopsis thaliana ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_01G01_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832139 ID=CF832139; Name=CF832139; organism=Citrus sinensis; type=EST; length=566bp
ATTCATTGTTCAAAACCGGCCTGAGTGGTGGGTCTATTCCATCTTCTGGC
AACCACTGAAAGACGTGAACGGCCGCCTTGTTTTATCATGGGGTGATGGC
TATTTCCGCGGGAGCAAAGATTTTGCTACAAGGGCGGCGGCAGGCAAACA
AGGCGCAGGCAACGAGCCGAAATTCGGCTTCTTTTTGGAGAGGAAGAAGG
TGAGCAAAGAGGTTCAAGTTCATTTCGGAGAGGATATGGACTTGGATAGA
ATGGTGGATGGGGATGTTACGGACGGGGAATGGTATTACACAGTGTCGGT
TACCCGTTCATTTGCAATTGGTGATGGTAGTGCTCTTGGTAGGGTGTTTA
GCTCTGGTGATTATGTGTGGCTAACTGGTGACCATGAGCTCCAACTGTAC
GAGTGTGAAAGAGTTAAAGAAGCTCGTATGCATGGGATTCAGACTTTGGT
CTGCGTTTCAACTGCTTGTGGAGTTGTTGAATTGGGCTCTTCAGATTTGA
TCAAAGAAGATTGGAGCTTGGTGCAATTAGCCAAATCTCTCTTCGGCCCT
GTCATTGCTACTATGC
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