CF832149

Overview
NameCF832149
Unique NameCF832149
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length599
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5157 contig Csv1_Contig5157:110..691. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832149 vs. ExPASy Swiss-Prot
Match: RS191_ARATH (40S ribosomal protein S19-1 OS=Arabidopsis thaliana GN=RPS19A PE=2 SV=1)

HSP 1 Score: 256.144 bits (653), Expect = 9.481e-68
Identity = 122/141 (86.52%), Postives = 130/141 (92.20%), Query Frame = 3
Query:    3 METAKNVKDVSPHEFVKAYAAHLKRSGKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGRRITSSGQRDLDQVAGRIAV 425
            M T K VKDVSPH+FVKAYA+HLKRSGKIELPTW DIVKTG LKELAPYDPDWYYIRAASMARK+YLRGGLGVG+FRRIYGG KRNGSRPPHF KSSG +ARHIL QL+  NI+ELD+KGGRRITSSGQRDLDQVAGRIAV
Sbjct:    1 MATGKTVKDVSPHDFVKAYASHLKRSGKIELPTWTDIVKTGKLKELAPYDPDWYYIRAASMARKVYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMNIVELDTKGGRRITSSGQRDLDQVAGRIAV 141          
BLAST of CF832149 vs. ExPASy Swiss-Prot
Match: RS193_ARATH (40S ribosomal protein S19-3 OS=Arabidopsis thaliana GN=RPS19C PE=2 SV=1)

HSP 1 Score: 253.832 bits (647), Expect = 4.705e-67
Identity = 122/140 (87.14%), Postives = 128/140 (91.43%), Query Frame = 3
Query:    3 METAKNVKDVSPHEFVKAYAAHLKRSGKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGRRITSSGQRDLDQVAGRIA 422
            M T K VKDVSPHEFVKAYAAHLKRSGKIELP W DIVKTG LKELAPYDPDWYYIRAASMARK+YLRGGLGVG+FRRIYGG KRNGSRPPHF KSSG VARHIL QLQ  NI++LD+KGGR+ITSSGQRDLDQVAGRIA
Sbjct:    1 MATGKTVKDVSPHEFVKAYAAHLKRSGKIELPLWTDIVKTGKLKELAPYDPDWYYIRAASMARKVYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGVARHILQQLQTMNIVDLDTKGGRKITSSGQRDLDQVAGRIA 140          
BLAST of CF832149 vs. ExPASy Swiss-Prot
Match: RS192_ARATH (40S ribosomal protein S19-2 OS=Arabidopsis thaliana GN=RPS19B PE=2 SV=1)

HSP 1 Score: 250.751 bits (639), Expect = 3.983e-66
Identity = 120/140 (85.71%), Postives = 128/140 (91.43%), Query Frame = 3
Query:    3 METAKNVKDVSPHEFVKAYAAHLKRSGKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGRRITSSGQRDLDQVAGRIA 422
            M T K VKDVSPH+FVKAYA+HLKRSGKIELP W DIVKTG LKELAPYDPDWYYIRAASMARKIYLRGGLGVG+FRRIYGG KRNGSRPPHF KSSG +ARHIL QL+  +I+ELD+KGGRRITSSGQRDLDQVAGRIA
Sbjct:    1 MATGKTVKDVSPHDFVKAYASHLKRSGKIELPLWTDIVKTGRLKELAPYDPDWYYIRAASMARKIYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMSIVELDTKGGRRITSSGQRDLDQVAGRIA 140          
BLAST of CF832149 vs. ExPASy Swiss-Prot
Match: RS19_ORYSJ (40S ribosomal protein S19 OS=Oryza sativa subsp. japonica GN=RPS19A PE=3 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 8.325e-56
Identity = 102/139 (73.38%), Postives = 119/139 (85.61%), Query Frame = 3
Query:    9 TAKNVKDVSPHEFVKAYAAHLKRSGKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGRRITSSGQRDLDQVAGRIAV 425
            TA+ VKDV+PHEFVKAY+AHLKRSGK+ELP W DIVKT   KEL PYDPDWYY RAAS+ARKIYLR G+GVG F++IYGG +RNGSRPPHF KSSG+++R+IL QLQ   II++D KGGR ITS G+RDLDQVAGR+ V
Sbjct:    5 TARTVKDVNPHEFVKAYSAHLKRSGKMELPEWVDIVKTARFKELPPYDPDWYYTRAASIARKIYLRQGIGVGGFQKIYGGRQRNGSRPPHFCKSSGAISRNILQQLQKMGIIDVDPKGGRLITSQGRRDLDQVAGRVDV 143          
BLAST of CF832149 vs. ExPASy Swiss-Prot
Match: RS19_MYAAR (40S ribosomal protein S19 OS=Mya arenaria GN=RPS19 PE=2 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 2.778e-43
Identity = 76/135 (56.30%), Postives = 105/135 (77.78%), Query Frame = 3
Query:   18 NVKDVSPHEFVKAYAAHLKRSGKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGRRITSSGQRDLDQVAGRIA 422
            +VKDVS HEF +A+AA LK+SGK+++P W D VKTG  KEL+PY+PDWY+IRAAS+ R +Y+R   G+GSF +IYGG +R G+ P HF K++GS++R +L  L+   I+E D  GGRR+TS G+RDLD++A +IA
Sbjct:    4 SVKDVSSHEFTRAFAAFLKKSGKMKVPEWTDFVKTGMFKELSPYEPDWYFIRAASICRHLYIRSPAGIGSFEKIYGGRRRRGTAPSHFCKANGSISRRLLQSLEGLKIVEKDPNGGRRLTSQGRRDLDRIAAQIA 138          
BLAST of CF832149 vs. ExPASy Swiss-Prot
Match: RS19_BRABE (40S ribosomal protein S19 OS=Branchiostoma belcheri GN=RPS19 PE=2 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 8.936e-42
Identity = 78/134 (58.21%), Postives = 104/134 (77.61%), Query Frame = 3
Query:   21 VKDVSPHEFVKAYAAHLKRSGKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGRRITSSGQRDLDQVAGRIA 422
            VKDV+  EFVKA+AA LK+SGK++LP W D+VKT   KELAPYDPDW+Y+RAAS AR +Y+RGG+GVG+  +IYGG KR G++P  F   S  V+R +L  L+   ++E D+ GGRR+TS GQRDLD++AG++A
Sbjct:    7 VKDVNQQEFVKAFAAFLKKSGKLKLPEWVDLVKTAPHKELAPYDPDWFYLRAASTARHLYMRGGVGVGAMCKIYGGRKRRGTKPAKFRVCSRGVSRTVLQSLEGIKMVEKDAAGGRRLTSQGQRDLDRIAGQVA 140          
BLAST of CF832149 vs. ExPASy Swiss-Prot
Match: RS19_MYXGL (40S ribosomal protein S19 OS=Myxine glutinosa GN=rps19 PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 2.600e-41
Identity = 77/137 (56.20%), Postives = 105/137 (76.64%), Query Frame = 3
Query:   21 VKDVSPHEFVKAYAAHLKRSGKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGRRITSSGQRDLDQVAGRIAVVA 431
            VKDV+  EFVKA AA  K+SGK++ P W D VK G  KELAP+D DWYYIR AS+AR +Y+RGG+GVG+  +IYGG +RNG+RP H+S+ S +VAR +L  L+   ++E D  GGRR+TS GQRD+D++AG++ V++
Sbjct:    6 VKDVNQQEFVKALAAFFKKSGKLKKPDWVDTVKLGKHKELAPFDIDWYYIRTASVARHLYMRGGVGVGAMTKIYGGRQRNGTRPSHYSRGSRNVARKVLQSLEMLKMVEKDPNGGRRLTSIGQRDMDRIAGQVVVLS 142          
BLAST of CF832149 vs. ExPASy Swiss-Prot
Match: RS19_RAT (40S ribosomal protein S19 OS=Rattus norvegicus GN=Rps19 PE=2 SV=3)

HSP 1 Score: 166.007 bits (419), Expect = 1.290e-40
Identity = 78/134 (58.21%), Postives = 100/134 (74.63%), Query Frame = 3
Query:   21 VKDVSPHEFVKAYAAHLKRSGKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGRRITSSGQRDLDQVAGRIA 422
            VKDV+  EFV+A AA LK+SGK+++P W D VK    KELAPYD +W+Y RAAS AR +YLRGG GVGS  +IYGG +RNG RP HFS+ S SVAR +L  L+   ++E D  GGR++T  GQRDLD++AG++A
Sbjct:    6 VKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAASTARHLYLRGGAGVGSMTKIYGGRQRNGVRPSHFSRGSKSVARRVLQALEGLKMVEKDQDGGRKLTPQGQRDLDRIAGQVA 139          
BLAST of CF832149 vs. ExPASy Swiss-Prot
Match: RS19_MOUSE (40S ribosomal protein S19 OS=Mus musculus GN=Rps19 PE=1 SV=3)

HSP 1 Score: 166.007 bits (419), Expect = 1.290e-40
Identity = 78/134 (58.21%), Postives = 100/134 (74.63%), Query Frame = 3
Query:   21 VKDVSPHEFVKAYAAHLKRSGKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGRRITSSGQRDLDQVAGRIA 422
            VKDV+  EFV+A AA LK+SGK+++P W D VK    KELAPYD +W+Y RAAS AR +YLRGG GVGS  +IYGG +RNG RP HFS+ S SVAR +L  L+   ++E D  GGR++T  GQRDLD++AG++A
Sbjct:    6 VKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAASTARHLYLRGGAGVGSMTKIYGGRQRNGVRPSHFSRGSKSVARRVLQALEGLKMVEKDQDGGRKLTPQGQRDLDRIAGQVA 139          
BLAST of CF832149 vs. ExPASy Swiss-Prot
Match: RS19_PONAB (40S ribosomal protein S19 OS=Pongo abelii GN=RPS19 PE=2 SV=3)

HSP 1 Score: 163.696 bits (413), Expect = 6.404e-40
Identity = 77/134 (57.46%), Postives = 99/134 (73.88%), Query Frame = 3
Query:   21 VKDVSPHEFVKAYAAHLKRSGKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGRRITSSGQRDLDQVAGRIA 422
            VKDV+  EFV+A AA LK+SGK+++P W D VK    KELAPYD +W+Y RAAS AR +YLRGG GVGS  +IYGG +RNG  P HFS+ S SVAR +L  L+   ++E D  GGR++T  GQRDLD++AG++A
Sbjct:    6 VKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAASTARHLYLRGGAGVGSMTKIYGGRQRNGVMPSHFSRGSKSVARRVLQALEGLKMVEKDQDGGRKLTPQGQRDLDRIAGQVA 139          
The following BLAST results are available for this feature:
BLAST of CF832149 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
RS191_ARATH9.481e-6886.5240S ribosomal protein S19-1 OS=Arabidopsis thalian... [more]
RS193_ARATH4.705e-6787.1440S ribosomal protein S19-3 OS=Arabidopsis thalian... [more]
RS192_ARATH3.983e-6685.7140S ribosomal protein S19-2 OS=Arabidopsis thalian... [more]
RS19_ORYSJ8.325e-5673.3840S ribosomal protein S19 OS=Oryza sativa subsp. j... [more]
RS19_MYAAR2.778e-4356.3040S ribosomal protein S19 OS=Mya arenaria GN=RPS19... [more]
RS19_BRABE8.936e-4258.2140S ribosomal protein S19 OS=Branchiostoma belcher... [more]
RS19_MYXGL2.600e-4156.2040S ribosomal protein S19 OS=Myxine glutinosa GN=r... [more]
RS19_RAT1.290e-4058.2140S ribosomal protein S19 OS=Rattus norvegicus GN=... [more]
RS19_MOUSE1.290e-4058.2140S ribosomal protein S19 OS=Mus musculus GN=Rps19... [more]
RS19_PONAB6.404e-4057.4640S ribosomal protein S19 OS=Pongo abelii GN=RPS19... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01G08_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832149 ID=CF832149; Name=CF832149; organism=Citrus sinensis; type=EST; length=599bp
GAATGGAGACTGCAAAAAACGTGAAGGACGTCTCTCCCCACGAGTTCGTC
AAGGCCTACGCCGCCCATCTCAAGCGCTCCGGCAAGATTGAGCTTCCTAC
TTGGAACGACATCGTCAAGACTGGAACGTTGAAGGAGCTAGCCCCTTATG
ACCCCGATTGGTACTATATCAGGGCTGCTTCAATGGCGAGGAAGATCTAC
TTGAGGGGTGGTCTTGGTGTTGGTTCCTTCCGTAGAATCTATGGAGGGGG
GAAGAGGAACGGTAGCCGCCCACCTCATTTCAGCAAGAGCAGTGGCTCTG
TTGCTCGTCACATACTTCACCAATTGCAGGACACGAACATCATCGAGCTT
GACTCCAAGGGTGGAAGGAGAATCACATCCAGTGGGCAGCGGGATCTTGA
TCAAGTTGCTGGACGGATTGCAGTTGTTGCCCCTTGAGGGATTAGCTCAA
GCTTTCAAAAGGATTGATGTTATTGAGTTAGTTGTTTGAATGGGAGTAGT
AGATAGAAAGCATCGTTAGTTGATTTTCAGTTCTCTGATAGTAACCTAAG
ATGAATTGATAATGAATATTCTTTTTCATATTTAAAAAAAAAAAAAAAA
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