CF832158

Overview
NameCF832158
Unique NameCF832158
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length777
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5720 contig Csv1_Contig5720:65..841. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832158 vs. ExPASy Swiss-Prot
Match: ATP7_ARATH (Probable ATP synthase 24 kDa subunit, mitochondrial OS=Arabidopsis thaliana GN=At2g21870 PE=1 SV=1)

HSP 1 Score: 340.117 bits (871), Expect = 7.978e-93
Identity = 173/240 (72.08%), Postives = 201/240 (83.75%), Query Frame = 2
Query:   47 MAFASRLASKSKQLCSSQVILQRQHAISVRFFANEAAPQALKGDEMLKNIFLDVKKKFETALGVLRKEKITIAPEDPAAVSQYANVMKTVREKADLFSESQRIAYTIETRTAGIPDARTYLLTLKEIRERRGLIDEHGAEAMMMDALEKVEKEIKKPLMRNDKKGMALLTAEFDKINKKLGIRKEDLPKYEEQLELKIAKAQLEELKKDALEAMETQKKREEFKDEEMVQVKSLDVRNFL 766
            MA+ASR  S+SKQL    VILQ+QHAI VR FA EAA    KGDEMLK +F D+K KF+ A+ +LRKEKIT+ PEDPAAV QYANVMKT+R+KAD+FSESQRI + I+T T  IPDAR YLL L+EIR RRGL DE GAEAMM +ALEKVEK+IKKPL+R+DKKGM LL AEF+K NKKLGIRKEDLPKYEE LEL +AKAQL+ELK DA+EAME+QKK+EEF+DEEM  VKSLD+RNF+
Sbjct:    1 MAYASRFLSRSKQLQGGLVILQQQHAIPVRAFAKEAARPTFKGDEMLKGVFFDIKNKFQAAVDILRKEKITLDPEDPAAVKQYANVMKTIRQKADMFSESQRIKHDIDTETQDIPDARAYLLKLQEIRTRRGLTDELGAEAMMFEALEKVEKDIKKPLLRSDKKGMDLLVAEFEKGNKKLGIRKEDLPKYEENLELSMAKAQLDELKSDAVEAMESQKKKEEFQDEEMPDVKSLDIRNFI 240          
The following BLAST results are available for this feature:
BLAST of CF832158 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
ATP7_ARATH7.978e-9372.08Probable ATP synthase 24 kDa subunit, mitochondria... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_01G13_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01G13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832158 ID=CF832158; Name=CF832158; organism=Citrus sinensis; type=EST; length=777bp
CAGAAACCTCGACGATTAAACAACAGCTGAGGTTCTGATTCCGATCATGG
CATTTGCTTCTCGCCTCGCATCCAAATCCAAACAGCTGTGTAGTAGTCAA
GTGATACTGCAACGGCAGCATGCAATTTCAGTTCGTTTCTTTGCAAACGA
AGCTGCTCCTCAGGCTCTTAAAGGAGATGAGATGTTGAAAAACATCTTTT
TGGATGTTAAGAAGAAATTTGAGACTGCCTTGGGGGTACTCCGGAAGGAG
AAGATCACCATTGCTCCAGAGGATCCTGCTGCTGTTTCTCAGTATGCTAA
TGTCATGAAGACTGTCAGAGAGAAGGCAGACTTGTTCTCAGAATCCCAAC
GAATAGCGTATACCATTGAAACACGAACAGCAGGAATTCCAGATGCTCGA
ACATATTTGTTGACGCTCAAGGAAATAAGGGAGAGGAGAGGTCTCATTGA
TGAGCATGGTGCTGAGGCTATGATGATGGATGCATTGGAGAAAGTTGAAA
AAGAAATTAAAAAGCCTCTTATGAGGAATGATAAGAAGGGGATGGCTCTT
CTTACAGCTGAGTTTGACAAGATTAATAAGAAGCTTGGGATCCGAAAGGA
GGATCTACCAAAGTATGAAGAACAGTTGGAACTCAAAATTGCCAAAGCAC
AGTTGGAAGAATTGAAGAAGGATGCTCTTGAGGCCATGGAAACACAAAAG
AAGAGAGAGGAATTCAAGGATGAGGAAATGGTCCAAGTGAAGTCCTTGGA
TGTCAGAAACTTCCTTTGAGTCTCTGC
back to top