CF832160

Overview
NameCF832160
Unique NameCF832160
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length615
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF832160_ssr1 microsatellite CF832160_ssr1:1..12. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5598 contig Csv1_Contig5598:24..640. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832160 vs. ExPASy Swiss-Prot
Match: MIFH_TRISP (Macrophage migration inhibitory factor homolog OS=Trichinella spiralis PE=1 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 9.053e-21
Identity = 49/115 (42.61%), Postives = 71/115 (61.74%), Query Frame = 2
Query:   74 MPCLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKGSNFGWNGSTF 418
            MP   ++TN+K   V  S  LS  ++ V NI+ KP +YV + +     +SFGG+  PAA+G L+SIGG+ P  N+  SA +   L KKL +PK+R +I F +  G + GWNG+TF
Sbjct:    1 MPIFTLNTNIKATDVP-SDFLSSTSALVGNILSKPGSYVAVHINTDQQLSFGGSTKPAAFGTLMSIGGIEPSRNRDHSAKLFDHLNKKLGIPKNRMYIHFVNLNGDDVGWNGTTF 114          
BLAST of CF832160 vs. ExPASy Swiss-Prot
Match: MIFH_TRITR (Macrophage migration inhibitory factor homolog OS=Trichuris trichiura PE=1 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 6.488e-19
Identity = 44/115 (38.26%), Postives = 70/115 (60.87%), Query Frame = 2
Query:   74 MPCLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKGSNFGWNGSTF 418
            MP    STNV  + +     L   +  +A ++GKPE+YV + + G   ++FGGT+ PA +G+L+S+GG+  + N+  SA +   L   L +P +R +I F D +GS+ G+NGSTF
Sbjct:    1 MPIFTFSTNVPSENISVD-FLKSTSKLIAGMLGKPESYVAVHINGGQKITFGGTDAPAGFGQLLSLGGVGGEKNRSHSAKLFKHLTDGLGIPGNRMYINFVDMRGSDVGYNGSTF 114          
BLAST of CF832160 vs. ExPASy Swiss-Prot
Match: MIFH_BRUMA (Macrophage migration inhibitory factor homolog OS=Brugia malayi GN=BMBAC01P19.1 PE=3 SV=4)

HSP 1 Score: 91.2781 bits (225), Expect = 4.205e-18
Identity = 47/115 (40.87%), Postives = 71/115 (61.74%), Query Frame = 2
Query:   74 MPCLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKGSNFGWNGSTF 418
            MP   I TN+  + + +S+ L +A++ VA  +GKPE+YV I + G   M FGG+EDP A   L SIG + P VN   +  +  +L  +L +PK+R +I+F D + S+  +NGSTF
Sbjct:    1 MPYFTIDTNIPQNSI-SSAFLKKASNVVAKALGKPESYVSIHVNGGQAMVFGGSEDPCAVCVLKSIGCVGPKVNNSHAEKLYKLLADELKIPKNRCYIEFVDIEASSMAFNGSTF 114          
BLAST of CF832160 vs. ExPASy Swiss-Prot
Match: MIF_XENLA (Macrophage migration inhibitory factor OS=Xenopus laevis GN=mif PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 4.649e-17
Identity = 47/115 (40.87%), Postives = 64/115 (55.65%), Query Frame = 2
Query:   74 MPCLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKGSNFGWNGSTF 418
            MP   I TNV  D V   ++LS+ T  +A   GKP  Y+ I +     MSFG + DP A   L SIG +    NK  +  +  IL K+L++P +R +I +YD   +N GWNGSTF
Sbjct:    1 MPVFTIRTNVCRDSVP-DTLLSDLTKQLAKATGKPAEYIAIHIVPDQIMSFGDSTDPCAVCSLCSIGKIGGPQNKSYTKLLCDILTKQLNIPANRVYINYYDLNAANVGWNGSTF 114          
BLAST of CF832160 vs. ExPASy Swiss-Prot
Match: MIFH_WUCBA (Macrophage migration inhibitory factor homolog OS=Wuchereria bancrofti GN=MIF PE=3 SV=3)

HSP 1 Score: 86.6557 bits (213), Expect = 1.036e-16
Identity = 46/115 (40.00%), Postives = 67/115 (58.26%), Query Frame = 2
Query:   74 MPCLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKGSNFGWNGSTF 418
            MP   I TN   D + +S+ L +A + V   +GKPE+YV I + G  PM FGG+EDP     L SIG + P VN   +  +  +L  +L +PK+R +I+  D + S+  +NGSTF
Sbjct:    1 MPYFTIDTNKPQDSI-SSAFLKKAPNVVPKALGKPESYVSIHVNGGQPMVFGGSEDPCPVCVLKSIGCVGPKVNNSHAEKLYKLLADELKIPKNRCYIESVDIEASSMAFNGSTF 114          
BLAST of CF832160 vs. ExPASy Swiss-Prot
Match: MIF_XENTR (Macrophage migration inhibitory factor OS=Xenopus tropicalis GN=mif PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 8.768e-16
Identity = 44/115 (38.26%), Postives = 63/115 (54.78%), Query Frame = 2
Query:   74 MPCLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKGSNFGWNGSTF 418
            MP   + TNV  D +   ++LS+ T  +A   GKP  Y+ I +     MSFG + DP A   L SIG +    NK  S  +   L K++++P +R +I F+D   +N GWNGSTF
Sbjct:    1 MPTFTVCTNVCRDSMP-DTLLSDLTKLLAKATGKPAEYIAIHIMPDQMMSFGDSTDPCAVCSLSSIGKIGGPQNKSYSKLLCDYLTKQMNIPANRVYINFHDLNPANVGWNGSTF 114          
BLAST of CF832160 vs. ExPASy Swiss-Prot
Match: MIF_CHICK (Macrophage migration inhibitory factor OS=Gallus gallus GN=MIF PE=3 SV=3)

HSP 1 Score: 83.1889 bits (204), Expect = 1.145e-15
Identity = 45/115 (39.13%), Postives = 60/115 (52.17%), Query Frame = 2
Query:   74 MPCLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKGSNFGWNGSTF 418
            MP   I TNV  D V   S+L E T  +A   GKP  Y+ + +     MSFGG+ DP A   L SIG +    NK  +  +  ++ K L V   R +I ++D   +N GWNGSTF
Sbjct:    1 MPMFTIHTNVCKDAVP-DSLLGELTQQLAKATGKPAQYIAVHIVPDQMMSFGGSTDPCALCSLYSIGKIGGQQNKTYTKLLCDMIAKHLHVSADRVYINYFDINAANVGWNGSTF 114          
BLAST of CF832160 vs. ExPASy Swiss-Prot
Match: MIF_RAT (Macrophage migration inhibitory factor OS=Rattus norvegicus GN=Mif PE=1 SV=4)

HSP 1 Score: 78.1814 bits (191), Expect = 3.684e-14
Identity = 42/115 (36.52%), Postives = 58/115 (50.43%), Query Frame = 2
Query:   74 MPCLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKGSNFGWNGSTF 418
            MP   ++TNV    V     LSE T  +A   GKP  Y+ + +     M+F GT DP A   L SIG +    N+  S  +  +L  +L +   R +I +YD   +N GWNGSTF
Sbjct:    1 MPMFIVNTNVPRASVP-EGFLSELTQQLAQATGKPAQYIAVHVVPDQLMTFSGTSDPCALCSLHSIGKIGGAQNRNYSKLLCGLLSDRLHISPDRVYINYYDMNAANVGWNGSTF 114          
BLAST of CF832160 vs. ExPASy Swiss-Prot
Match: MIF_MOUSE (Macrophage migration inhibitory factor OS=Mus musculus GN=Mif PE=1 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 3.684e-14
Identity = 42/115 (36.52%), Postives = 58/115 (50.43%), Query Frame = 2
Query:   74 MPCLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKGSNFGWNGSTF 418
            MP   ++TNV    V     LSE T  +A   GKP  Y+ + +     M+F GT DP A   L SIG +    N+  S  +  +L  +L +   R +I +YD   +N GWNGSTF
Sbjct:    1 MPMFIVNTNVPRASVP-EGFLSELTQQLAQATGKPAQYIAVHVVPDQLMTFSGTNDPCALCSLHSIGKIGGAQNRNYSKLLCGLLSDRLHISPDRVYINYYDMNAANVGWNGSTF 114          
BLAST of CF832160 vs. ExPASy Swiss-Prot
Match: MIF_MERUN (Macrophage migration inhibitory factor OS=Meriones unguiculatus GN=MIF PE=3 SV=3)

HSP 1 Score: 77.7962 bits (190), Expect = 4.811e-14
Identity = 41/115 (35.65%), Postives = 59/115 (51.30%), Query Frame = 2
Query:   74 MPCLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKGSNFGWNGSTF 418
            MP   ++TNV    V    +LSE T  +A   GKP  Y+ + +     M+F G+ DP A   L SIG +    N+  S  +  +L  +L +   R +I +YD   +N GWNGSTF
Sbjct:    1 MPMFIVNTNVPRSSVP-EGLLSELTQQLAQATGKPAQYIAVHVVPDQLMTFSGSSDPCALCSLHSIGKIGGAQNRTYSKLLCGLLADRLRISPDRIYINYYDMNAANVGWNGSTF 114          
The following BLAST results are available for this feature:
BLAST of CF832160 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
MIFH_TRISP9.053e-2142.61Macrophage migration inhibitory factor homolog OS=... [more]
MIFH_TRITR6.488e-1938.26Macrophage migration inhibitory factor homolog OS=... [more]
MIFH_BRUMA4.205e-1840.87Macrophage migration inhibitory factor homolog OS=... [more]
MIF_XENLA4.649e-1740.87Macrophage migration inhibitory factor OS=Xenopus ... [more]
MIFH_WUCBA1.036e-1640.00Macrophage migration inhibitory factor homolog OS=... [more]
MIF_XENTR8.768e-1638.26Macrophage migration inhibitory factor OS=Xenopus ... [more]
MIF_CHICK1.145e-1539.13Macrophage migration inhibitory factor OS=Gallus g... [more]
MIF_RAT3.684e-1436.52Macrophage migration inhibitory factor OS=Rattus n... [more]
MIF_MOUSE3.684e-1436.52Macrophage migration inhibitory factor OS=Mus musc... [more]
MIF_MERUN4.811e-1435.65Macrophage migration inhibitory factor OS=Meriones... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01G15_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01G15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832160 ID=CF832160; Name=CF832160; organism=Citrus sinensis; type=EST; length=615bp
AGAAAGAAAGAAAGTAAAGCGAGTGGTTAGGGAAGCTACAAGAGTAGGGT
TTTCCGTCGGAAGTTTCGAGAAGATGCCTTGCTTGAACATTTCAACTAAC
GTCAAACTCGATGGCGTTGACACGTCATCCATCCTCTCCGAGGCCACCTC
CACTGTCGCCAACATCATCGGCAAACCCGAGGCCTACGTGATGATTGTGT
TGAAGGGATCGGTACCTATGTCGTTTGGTGGAACTGAGGATCCGGCAGCT
TATGGTGAGTTGGTGTCCATTGGTGGCCTTAACCCTGATGTGAACAAGAA
GCTGAGTGCTGCAATTTCTGCAATTCTTGAAAAGAAGCTGTCGGTACCCA
AGTCACGATTCTTCATCAAGTTTTATGACACAAAGGGTTCAAACTTTGGA
TGGAATGGATCCACCTTCTAGATATTATTCTCAAAGCATGGCGCCATGAA
CTCTGACAATTGTCTTATCTATATGGTGATTACAATCTTTAGAACTATGT
TAATAATTGGCTGAATATTGTGTAATTTCTCCTATGATGTGTTTTCTTCT
CGTTGGTGCTAGCCAACAATATTGTGGAATAGGAACTGTTTGGTTTATGG
AGTAATATTGCATTT
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