CF832165

Overview
NameCF832165
Unique NameCF832165
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length691
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832165 vs. ExPASy Swiss-Prot
Match: 14KD_DAUCA (14 kDa proline-rich protein DC2.15 OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.184e-25
Identity = 64/136 (47.06%), Postives = 76/136 (55.88%), Query Frame = 1
Query:   40 MASKTSASLALFLAVNILFFALVTACGXXXXXXXXXXXXXXXXXX-----GASCPRDALKLGVCANVLNGLLNVTIGTPPVQPCCTLIQGLADLEAAVCLCTAIKAXXXXXXXXXXXXXXXXXXVCSKSVPRGFQC 432
            M SK SAS+ALF  +NILFFALV++                            CPRDALKLGVCA+VLN + NV IG+PP  PCC+L++GL +LEAAVCLCTAIKA                   C K VP GF+C
Sbjct:    1 MGSKNSASVALFFTLNILFFALVSSTEKCPDPYKPKPKPTPKPTPTPYPSAGKCPRDALKLGVCADVLNLVHNVVIGSPPTLPCCSLLEGLVNLEAAVCLCTAIKANILGKNLNLPIALSLVLNNCGKQVPNGFEC 136          
BLAST of CF832165 vs. ExPASy Swiss-Prot
Match: PRF1_SOLLC (36.4 kDa proline-rich protein OS=Solanum lycopersicum GN=TPRP-F1 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.158e-13
Identity = 35/84 (41.67%), Postives = 46/84 (54.76%), Query Frame = 1
Query:  181 SCPRDALKLGVCANVLNGLLNVTIGTPPVQPCCTLIQGLADLEAAVCLCTAIKAXXXXXXXXXXXXXXXXXXVCSKSVPRGFQC 432
            +CP DALKLG C +VL GL+++ IG    Q CC L+ GL DL+AA+CLCT I+                    C K  P+ F+C
Sbjct:  260 TCPIDALKLGACVDVLGGLIHIGIGGSAKQTCCPLLGGLVDLDAAICLCTTIRLKLLNINIILPIALQVLIDDCGKYPPKDFKC 343          
BLAST of CF832165 vs. ExPASy Swiss-Prot
Match: CCDP_MAIZE (Cortical cell-delineating protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.737e-13
Identity = 48/126 (38.10%), Postives = 59/126 (46.83%), Query Frame = 1
Query:   64 LALFLAVNILFFALVTACGXXXXXXXXXXXXXXXXXXGAS---CPRDALKLGVCANVLNGLLNVTIGTPPVQPCCTLIQGLADLEAAVCLCTAIKAXXXXXXXXXXXXXXXXXXVCSKSVPRGFQC 432
            +ALFLA+++LF A    C                     S   CP DALKL VCA VL GL  V +G P  + CC L++GL DL+AA+CLCTAIKA                   C +  P  F C
Sbjct:    5 VALFLALSLLFAATAHGCEPNCSGPVVPTPPVVPTPSSHSHGRCPIDALKLKVCAKVL-GL--VKVGLPQYEQCCPLLEGLVDLDAALCLCTAIKANVLGIHLNVPLSLNFILNNCGRICPEDFTC 127          
The following BLAST results are available for this feature:
BLAST of CF832165 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
14KD_DAUCA1.184e-2547.0614 kDa proline-rich protein DC2.15 OS=Daucus carot... [more]
PRF1_SOLLC5.158e-1341.6736.4 kDa proline-rich protein OS=Solanum lycopersi... [more]
CCDP_MAIZE6.737e-1338.10Cortical cell-delineating protein OS=Zea mays PE=2... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_01G18_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01G18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832165 ID=CF832165; Name=CF832165; organism=Citrus sinensis; type=EST; length=691bp
ACGTATATAACGGAAAAGCTAGTGGCTAGGATTTAAGAGATGGCTTCAAA
AACCTCAGCTTCACTTGCTCTCTTTCTTGCAGTCAACATTCTCTTTTTTG
CCCTAGTCACTGCCTGTGGCTCTTGCCCTTCTCCTAAACCAAAACCCAAG
CCAAAGCCAACTCCCAGCCCGTCAGGGGCTTCCTGCCCAAGAGATGCCCT
TAAACTAGGTGTATGCGCCAACGTGCTTAATGGTTTGCTTAATGTCACTA
TTGGCACACCCCCGGTACAACCATGCTGCACTCTTATTCAAGGCCTTGCT
GATCTTGAGGCAGCTGTTTGCCTTTGCACTGCCATCAAAGCGAACATTTT
GGGCATCAACCTTAATATCCCGCTTTCACTCAGCCTTCTTTTGAACGTCT
GTTCAAAGAGTGTGCCCCGTGGTTTCCAGTGTGCTTAATGATGATCATAT
ATTTCTGTATCTTCGTCTTTAATTTAATTTACAGGTTCTGGGATTATGAG
TTCTGCACGGTAATGTGTGTTACTGGTAATTTCTGTTGTTTAATAATTTT
TCATACAGGTGGTTTGATTGCGAGATGACAGTGAATAAGTCTGATTTGTT
TACCTTGGTGGTGGTGTTTTCTTTATTATGTATTTTTCATTTAACAGAAG
ATGAATTACTCGTTTGTCTCGAAGCAAAAAAAAAAAAAAAA
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