CF832200

Overview
NameCF832200
Unique NameCF832200
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length688
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832200 vs. ExPASy Swiss-Prot
Match: 14KD_DAUCA (14 kDa proline-rich protein DC2.15 OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 6.821e-26
Identity = 65/136 (47.79%), Postives = 77/136 (56.62%), Query Frame = -3
Query:  258 MGSKTSASLALFLAVNILFFALVTACGXXXXXXXXXXXXXXXXXS-----GASCPRDALKLGVCANVLNGLLNVTIGTPPVQPCCTFIQGLADLEAAVCLCTAIKAXXXXXXXXXXXXXXXXXNVCSKSVPRGFQC 650
            MGSK SAS+ALF  +NILFFALV++                            CPRDALKLGVCA+VLN + NV IG+PP  PCC+ ++GL +LEAAVCLCTAIKA                 N C K VP GF+C
Sbjct:    1 MGSKNSASVALFFTLNILFFALVSSTEKCPDPYKPKPKPTPKPTPTPYPSAGKCPRDALKLGVCADVLNLVHNVVIGSPPTLPCCSLLEGLVNLEAAVCLCTAIKANILGKNLNLPIALSLVLNNCGKQVPNGFEC 136          
BLAST of CF832200 vs. ExPASy Swiss-Prot
Match: PRF1_SOLLC (36.4 kDa proline-rich protein OS=Solanum lycopersicum GN=TPRP-F1 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.475e-12
Identity = 34/84 (40.48%), Postives = 46/84 (54.76%), Query Frame = -3
Query:  258 SCPRDALKLGVCANVLNGLLNVTIGTPPVQPCCTFIQGLADLEAAVCLCTAIKAXXXXXXXXXXXXXXXXXNVCSKSVPRGFQC 509
            +CP DALKLG C +VL GL+++ IG    Q CC  + GL DL+AA+CLCT I+                  + C K  P+ F+C
Sbjct:  260 TCPIDALKLGACVDVLGGLIHIGIGGSAKQTCCPLLGGLVDLDAAICLCTTIRLKLLNINIILPIALQVLIDDCGKYPPKDFKC 343          
BLAST of CF832200 vs. ExPASy Swiss-Prot
Match: CCDP_MAIZE (Cortical cell-delineating protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.927e-12
Identity = 49/126 (38.89%), Postives = 60/126 (47.62%), Query Frame = -3
Query:  258 LALFLAVNILFFALVTACGXXXXXXXXXXXXXXXXXSGAS---CPRDALKLGVCANVLNGLLNVTIGTPPVQPCCTFIQGLADLEAAVCLCTAIKAXXXXXXXXXXXXXXXXXNVCSKSVPRGFQC 626
            +ALFLA+++LF A    C                  S  S   CP DALKL VCA VL GL  V +G P  + CC  ++GL DL+AA+CLCTAIKA                 N C +  P  F C
Sbjct:    5 VALFLALSLLFAATAHGCEPNCSGPVVPTPPVVPTPSSHSHGRCPIDALKLKVCAKVL-GL--VKVGLPQYEQCCPLLEGLVDLDAALCLCTAIKANVLGIHLNVPLSLNFILNNCGRICPEDFTC 127          
The following BLAST results are available for this feature:
BLAST of CF832200 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
14KD_DAUCA6.821e-2647.7914 kDa proline-rich protein DC2.15 OS=Daucus carot... [more]
PRF1_SOLLC1.475e-1240.4836.4 kDa proline-rich protein OS=Solanum lycopersi... [more]
CCDP_MAIZE1.927e-1238.89Cortical cell-delineating protein OS=Zea mays PE=2... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_01H17_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01H17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832200 ID=CF832200; Name=CF832200; organism=Citrus sinensis; type=EST; length=688bp
TTTTTTTTTTTTTTTGCTTCGAGAAAACGAGAAATTCATCTTCCGCTTTA
TGAAAAATACATAATAAAGAAAACACCACCACCAAGGCCAACAAATCAGA
CTTATTCACTGTCATCTCGCAATCAAACCACCTGGATGAAAAATTATTAA
ACAACAGAAATTACCAGTAACACACATTACCGTGCAGAACTCATAATCCC
AGAACCTGTAAATTAAATTAAAGACGAAGATACAGAAATATATGATCATC
ATTAAGCACACTGGAAACCACGGGGCACACTCTTTGAACAGACGTTCAAA
AGAAGGCTGAGTGAAAGCGGGATATTAAGGTTGATGCCCAAAATGTTCGC
TTTGATGGCAGTGCAAAGGCAAACAGCTGCCTCAAGATCAGCAAGGCCTT
GAATAAAAGTGCAGCATGGTTGTACCGGGGGTGTGCCAATAGTGACATTA
AGCAAACCATTAAGCACGTTGGCGCATACACCTAGTTTAAGGGCATCTCT
TGGGCAGGAAGCCCCTGACGGGCTGGGAGTTGGCTTTGGCTTGGGTTTTG
GTTTAGGAGAAGGGCAAGAGCCACAGGCAGTGACTAGGGCAAAAAAGAGA
ATGTTGACTGCAAGAAAGAGAGCAAGTGAAGCTGAGGTTTTTGAACCCAT
CTCTTAAATCCTAGCCACTAGCTTTTCCGTTATGATCC
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