CF832220

Overview
NameCF832220
Unique NameCF832220
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length706
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832220 vs. ExPASy Swiss-Prot
Match: TM208_DANRE (Transmembrane protein 208 OS=Danio rerio GN=tmem208 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.561e-20
Identity = 47/128 (36.72%), Postives = 78/128 (60.94%), Query Frame = 1
Query:  106 KREMANQGAKKRKEENARNMEKLRRLIIACNVIYFVVRMIILHSTFTWKHWVGLVLTSVAYAIPYQQLSAMAKPTYTDDGELIDGGFDMS-TGGICGYLHDVIYITSFVQVMSILSEKFWYTYLVIPA 486
            K ++  +G K+  EEN   ++   R+I+  N IY  V +++ +++ ++  W  L+     Y   Y+ +SAMAKP + +DG L+DGG D++   G+  +L DVI +T+ VQV+S LS  FWY +L+ PA
Sbjct:    4 KGKVGTKGKKQIHEENQDTLKFYSRIILGANAIYIAVNLLLFYNSSSFWTWFSLMFAVAVYVGSYRSMSAMAKPAFAEDGSLLDGGIDLNMEQGMAEHLKDVILLTAIVQVLSTLSSYFWYLWLLAPA 131          
BLAST of CF832220 vs. ExPASy Swiss-Prot
Match: TM208_DICDI (Transmembrane protein 208 homolog OS=Dictyostelium discoideum GN=tmem208 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.012e-19
Identity = 47/129 (36.43%), Postives = 76/129 (58.91%), Query Frame = 1
Query:  115 MANQGAKKRKEENARNMEKLRRLIIACNVIYFVVRMIILHSTFTWKHWVGLVLTSVAYAIPYQQLSAMAKPTYTDDGELIDGGFDMSTGGICGYLHDVIYITSFVQVMSILSEKFWYTYLVIPAFGAYQ 501
            MAN GAKKRK +N + + K+R ++ A  + Y + R++    TF    W   +  +      Y  +++M K TY ++GELIDGG D++ GG+  Y  D+IY+   +Q + ++S+K  Y  LVIPAF  ++
Sbjct:    1 MANSGAKKRKTQNEKELFKVRLIMAAGTIPYILYRVVYHSETFGGWLWFAYLSLNALNMFAYYIITSMCKLTYDNNGELIDGGSDLNQGGMTEYYFDIIYVCCIIQGLGLISDKCLYLILVIPAFAIFK 129          
BLAST of CF832220 vs. ExPASy Swiss-Prot
Match: TM208_BOVIN (Transmembrane protein 208 OS=Bos taurus GN=TMEM208 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.701e-17
Identity = 42/132 (31.82%), Postives = 77/132 (58.33%), Query Frame = 1
Query:  106 KREMANQGAKKRKEENARNMEKLRRLIIACNVIYFVVRMIILHSTFTWKHWVGLVLTSVAYAIPYQQLSAMAKPTYTDDGELIDGGFDMS-TGGICGYLHDVIYITSFVQVMSILSEKFWYTYLVIPAFGAY 498
            K ++  +G K+  EEN   ++   R+I+  N IY +V +++ +S+ ++  W+ L+ +   Y   Y  +S+MA+  +++DG L+DGG D++   G+  +L DVI +T+ VQV+S  S   W  +L+ P    Y
Sbjct:    4 KGKVGTRGKKQIFEENKETLKFYLRIILGANAIYCLVTLVVFYSSASFWAWMALLFSLAVYGASYHSMSSMARAAFSEDGALVDGGMDLNMEQGMAEHLKDVILLTAIVQVLSCFSLYIWSFWLLAPGRALY 135          
BLAST of CF832220 vs. ExPASy Swiss-Prot
Match: TM208_MOUSE (Transmembrane protein 208 OS=Mus musculus GN=Tmem208 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.047e-16
Identity = 42/132 (31.82%), Postives = 76/132 (57.58%), Query Frame = 1
Query:  106 KREMANQGAKKRKEENARNMEKLRRLIIACNVIYFVVRMIILHSTFTWKHWVGLVLTSVAYAIPYQQLSAMAKPTYTDDGELIDGGFDMS-TGGICGYLHDVIYITSFVQVMSILSEKFWYTYLVIPAFGAY 498
            K ++  +G K+  EEN   ++   R+I+  N IY +V ++  +S+ ++  W+ L  +   Y   Y  +S+MA+ ++++DG L+DGG D++   G+  +L DVI +T+ VQV+S  S   W  +L+ P    Y
Sbjct:    4 KGKVGTRGKKQIFEENKETLKFYLRIILGANAIYCLVTLVFFYSSASFWAWMALGFSLAVYGASYHSMSSMARASFSEDGSLMDGGMDLNMEQGMAEHLKDVILLTAIVQVLSCFSLYIWSFWLLAPGRALY 135          
BLAST of CF832220 vs. ExPASy Swiss-Prot
Match: TM208_XENLA (Transmembrane protein 208 OS=Xenopus laevis GN=tmem208 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.788e-16
Identity = 39/132 (29.55%), Postives = 76/132 (57.58%), Query Frame = 1
Query:  106 KREMANQGAKKRKEENARNMEKLRRLIIACNVIYFVVRMIILHSTFTWKHWVGLVLTSVAYAIPYQQLSAMAKPTYTDDGELIDGGFDMS-TGGICGYLHDVIYITSFVQVMSILSEKFWYTYLVIPAFGAY 498
            K ++  +G K+  EEN   +    R+I+   V+   + + + +S+  +  W  LV + + YA  Y+ + +MA+ ++++DG L+DGG D++   G+  ++ D++ +T+ VQV+S  S  FWY +L+ P    Y
Sbjct:    4 KGKVGTKGKKQIYEENKETLSFYLRIILGATVLCGAINLGVFYSSSNFWTWATLVFSGIVYAGAYRSMRSMAQASFSEDGSLLDGGIDLNMEQGMAEHIKDIVLLTAIVQVLSCFSLYFWYFWLLAPGRALY 135          
BLAST of CF832220 vs. ExPASy Swiss-Prot
Match: TM208_HUMAN (Transmembrane protein 208 OS=Homo sapiens GN=TMEM208 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.788e-16
Identity = 42/132 (31.82%), Postives = 75/132 (56.82%), Query Frame = 1
Query:  106 KREMANQGAKKRKEENARNMEKLRRLIIACNVIYFVVRMIILHSTFTWKHWVGLVLTSVAYAIPYQQLSAMAKPTYTDDGELIDGGFDMS-TGGICGYLHDVIYITSFVQVMSILSEKFWYTYLVIPAFGAY 498
            K ++  +G K+  EEN   ++   R+I+  N IY +V ++  +S+ ++  W+ L  +   Y   Y  +S+MA+  +++DG L+DGG D++   G+  +L DVI +T+ VQV+S  S   W  +L+ P    Y
Sbjct:    4 KGKVGTRGKKQIFEENRETLKFYLRIILGANAIYCLVTLVFFYSSASFWAWLALGFSLAVYGASYHSMSSMARAAFSEDGALMDGGMDLNMEQGMAEHLKDVILLTAIVQVLSCFSLYVWSFWLLAPGRALY 135          
BLAST of CF832220 vs. ExPASy Swiss-Prot
Match: TM208_CHICK (Transmembrane protein 208 OS=Gallus gallus GN=TMEM208 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.802e-15
Identity = 42/141 (29.79%), Postives = 70/141 (49.65%), Query Frame = 1
Query:  106 KREMANQGAKKRKEENARNMEKLRRLIIACNVIYFVVRMIILHSTFTWKHWVGLVLTSVAYAIPYQQLSAMAKPTYTDDGELIDGGFDMST----GGICGYLH------DVIYITSFVQVMSILSEKFWYTYLVIPAFGAY 498
            K +   +G K+  EEN   +    R+I+  + +Y  V +++ +   +   W+    +S  Y   Y+ +S+MA+P + DDG L DGG D++        C + H      DVI +T+ VQV+S  S   WY +L+ P    Y
Sbjct:    4 KGKAGTKGKKQIFEENRETLRFYLRIILGASAVYAAVNLVVFYPAASAWTWLAFAFSSAVYGASYRSMSSMARPAFADDGSLADGGIDLNMEQGWQSECPHPHEPRHLKDVILLTAMVQVLSCFSLYVWYFWLLAPGRALY 144          
The following BLAST results are available for this feature:
BLAST of CF832220 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
TM208_DANRE1.561e-2036.72Transmembrane protein 208 OS=Danio rerio GN=tmem20... [more]
TM208_DICDI1.012e-1936.43Transmembrane protein 208 homolog OS=Dictyostelium... [more]
TM208_BOVIN4.701e-1731.82Transmembrane protein 208 OS=Bos taurus GN=TMEM208... [more]
TM208_MOUSE3.047e-1631.82Transmembrane protein 208 OS=Mus musculus GN=Tmem2... [more]
TM208_XENLA6.788e-1629.55Transmembrane protein 208 OS=Xenopus laevis GN=tme... [more]
TM208_HUMAN6.788e-1631.82Transmembrane protein 208 OS=Homo sapiens GN=TMEM2... [more]
TM208_CHICK9.802e-1529.79Transmembrane protein 208 OS=Gallus gallus GN=TMEM... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_01I04_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01I04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832220 ID=CF832220; Name=CF832220; organism=Citrus sinensis; type=EST; length=706bp
CGAATACCCGACCCCTCCGCACTTGAAGATCGCCGTTGCTCCATCAATCG
AAGATTCAGACGCCGCAGAACGGCCTCACCTCTCTCTCATCACGTGATTC
ACGCTAAAAGAGAGATGGCTAATCAAGGAGCCAAGAAGCGCAAGGAAGAG
AACGCACGGAATATGGAAAAGCTACGTCGTCTCATTATTGCCTGCAATGT
TATATATTTCGTGGTGAGGATGATTATCCTTCATTCCACATTCACATGGA
AGCACTGGGTGGGTCTAGTTTTGACATCTGTGGCATATGCGATTCCATAT
CAACAGCTTTCTGCGATGGCAAAACCTACATATACTGATGATGGGGAACT
TATTGATGGTGGATTTGATATGAGCACTGGTGGAATTTGTGGCTATTTAC
ATGATGTTATCTACATCACAAGCTTTGTGCAAGTCATGTCCATTCTCTCT
GAAAAATTTTGGTACACATATCTGGTGATACCAGCATTTGGAGCGTACCA
ATCCTTTGGTTTCATTAAAGGATTTTTGCCGCAAGGTTCAGAGGGAGACA
CGGAGGATGAAAAGACTCGCAAAAAGAGGGAAAAGATGGAGAAGAAGGCT
TCACGAGGCAAGTTCGTCAAGACAAGAACTAGATAATCAAACATTTGAAG
TGATCTTACTACCAGTACGAGAAATGCTGCTCTTAAATTTCAGACTACCA
TGAAAA
back to top