CF832221

Overview
NameCF832221
Unique NameCF832221
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length713
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2389 contig Csv1_Contig2389:29..741. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832221 vs. ExPASy Swiss-Prot
Match: RL37A_ORYSJ (60S ribosomal protein L37a OS=Oryza sativa subsp. japonica GN=Os01g0679700 PE=1 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.663e-46
Identity = 89/91 (97.80%), Postives = 91/91 (100.00%), Query Frame = -3
Query:  151 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTE 423
            MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGK+AVKRKAVGIWGCKDCGKVKAGGAYT+NTASAVTVRSTIRRLREQTE
Sbjct:    1 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKFAVKRKAVGIWGCKDCGKVKAGGAYTMNTASAVTVRSTIRRLREQTE 91          
BLAST of CF832221 vs. ExPASy Swiss-Prot
Match: RL37A_GOSHI (60S ribosomal protein L37a OS=Gossypium hirsutum GN=RPL37A PE=3 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 2.837e-46
Identity = 90/91 (98.90%), Postives = 90/91 (98.90%), Query Frame = -3
Query:  151 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTE 423
            MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCK CGKVKAGGAYTLNTASAVTVRSTIRRLREQTE
Sbjct:    1 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKACGKVKAGGAYTLNTASAVTVRSTIRRLREQTE 91          
BLAST of CF832221 vs. ExPASy Swiss-Prot
Match: RL37A_PSEMZ (60S ribosomal protein L37a OS=Pseudotsuga menziesii GN=RPL37A PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.078e-45
Identity = 88/91 (96.70%), Postives = 90/91 (98.90%), Query Frame = -3
Query:  151 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTE 423
            MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSK+FCEFCGK+AVKRKAVGIWGCKDCGKVKAGGAYTLNT SAVTVRSTIRRLREQTE
Sbjct:    1 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKFFCEFCGKFAVKRKAVGIWGCKDCGKVKAGGAYTLNTPSAVTVRSTIRRLREQTE 91          
BLAST of CF832221 vs. ExPASy Swiss-Prot
Match: R37A1_ARATH (Putative 60S ribosomal protein L37a-1 OS=Arabidopsis thaliana GN=RPL37AB PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 6.988e-45
Identity = 86/91 (94.51%), Postives = 89/91 (97.80%), Query Frame = -3
Query:  151 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTE 423
            MTKRTKKA IVGKYGTRYGASLRKQIKKMEVSQH+KYFCEFCGKY+VKRK VGIWGCKDCGKVKAGGAYT+NTASAVTVRSTIRRLREQTE
Sbjct:    1 MTKRTKKARIVGKYGTRYGASLRKQIKKMEVSQHNKYFCEFCGKYSVKRKVVGIWGCKDCGKVKAGGAYTMNTASAVTVRSTIRRLREQTE 91          
BLAST of CF832221 vs. ExPASy Swiss-Prot
Match: R37A2_ARATH (60S ribosomal protein L37a-2 OS=Arabidopsis thaliana GN=RPL37AC PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.557e-44
Identity = 85/91 (93.41%), Postives = 87/91 (95.60%), Query Frame = -3
Query:  151 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTE 423
            M KRTKK GIVGKYGTRYGAS+RKQIKKMEVSQHSKYFCEFCGKY VKRKAVGIWGCKDCGKVKAGGAYT+NTASAVTVRSTIRRLREQ E
Sbjct:    1 MAKRTKKVGIVGKYGTRYGASIRKQIKKMEVSQHSKYFCEFCGKYGVKRKAVGIWGCKDCGKVKAGGAYTMNTASAVTVRSTIRRLREQIE 91          
BLAST of CF832221 vs. ExPASy Swiss-Prot
Match: RL37A_BRARA (60S ribosomal protein L37a OS=Brassica rapa GN=RPL37A PE=3 SV=2)

HSP 1 Score: 174.866 bits (442), Expect = 3.834e-43
Identity = 85/92 (92.39%), Postives = 87/92 (94.57%), Query Frame = -3
Query:  151 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRS-TIRRLREQTE 423
            M KRTKK GIVGKYGTRYGAS+RKQIKKMEVSQHSKYFCEFCGKY VKRKAVGIWGCKDCGKVKAGGAYT+NTASAVTVRS TIRRLREQ E
Sbjct:    1 MAKRTKKVGIVGKYGTRYGASIRKQIKKMEVSQHSKYFCEFCGKYGVKRKAVGIWGCKDCGKVKAGGAYTMNTASAVTVRSHTIRRLREQIE 92          
BLAST of CF832221 vs. ExPASy Swiss-Prot
Match: RL37A_OSTLU (60S ribosomal protein L37a OS=Ostreococcus lucimarinus (strain CCE9901) GN=RPL37a PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 6.335e-38
Identity = 73/91 (80.22%), Postives = 79/91 (86.81%), Query Frame = -3
Query:  151 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTE 423
            M KRTKK GIVGKYGTRYGASLRK +KK EVSQHSK+FC+FCGKY +KRKAVGIW CK C K KAGGAY+LNT  +VTVRSTIRRLRE TE
Sbjct:    1 MAKRTKKVGIVGKYGTRYGASLRKVVKKQEVSQHSKFFCDFCGKYGMKRKAVGIWSCKGCNKTKAGGAYSLNTGGSVTVRSTIRRLREATE 91          
BLAST of CF832221 vs. ExPASy Swiss-Prot
Match: RL37A_OSTTA (60S ribosomal protein L37a OS=Ostreococcus tauri GN=RPL37a PE=3 SV=2)

HSP 1 Score: 154.451 bits (389), Expect = 5.363e-37
Identity = 72/91 (79.12%), Postives = 79/91 (86.81%), Query Frame = -3
Query:  151 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTE 423
            M KRTKK GIVGKYGTRYGASLRK +KK EVSQHSK+FC+FCGKY +KR+AVGIW CK C K KAGGAY+LNT  +VTVRSTIRRLRE TE
Sbjct:    1 MAKRTKKVGIVGKYGTRYGASLRKVVKKTEVSQHSKFFCDFCGKYGMKRQAVGIWCCKGCNKTKAGGAYSLNTGGSVTVRSTIRRLREATE 91          
BLAST of CF832221 vs. ExPASy Swiss-Prot
Match: RL37A_CRYST (60S ribosomal protein L37a OS=Cryptochiton stelleri GN=RPL37A PE=3 SV=3)

HSP 1 Score: 144.436 bits (363), Expect = 5.549e-34
Identity = 67/91 (73.63%), Postives = 77/91 (84.62%), Query Frame = -3
Query:  151 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTE 423
            M KRTKK GIVGKYGTRYGASLRK +KKME++QHSKY C+FCGK A+KR+AVGIWGCK C KV AGGA+  +T +AVTVRS +RRLRE  E
Sbjct:    1 MAKRTKKVGIVGKYGTRYGASLRKTVKKMEITQHSKYTCQFCGKDAMKRQAVGIWGCKSCRKVVAGGAWVYSTMAAVTVRSAVRRLREMKE 91          
BLAST of CF832221 vs. ExPASy Swiss-Prot
Match: RL37A_DICDI (60S ribosomal protein L37a OS=Dictyostelium discoideum GN=rpl37A PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 6.784e-32
Identity = 63/88 (71.59%), Postives = 73/88 (82.95%), Query Frame = -3
Query:  160 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLRE 423
            M KRTKK G+VGKYGTRYGASLRKQ+KKME++QH  Y C FCGK AV+R +VGIW C  C KV AGGA+T++TA+  TVRSTIRRLRE
Sbjct:    1 MAKRTKKVGVVGKYGTRYGASLRKQVKKMEITQHGTYTCSFCGKDAVRRSSVGIWKCNGCRKVLAGGAWTMSTAAGATVRSTIRRLRE 88          
The following BLAST results are available for this feature:
BLAST of CF832221 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
RL37A_ORYSJ1.663e-4697.8060S ribosomal protein L37a OS=Oryza sativa subsp. ... [more]
RL37A_GOSHI2.837e-4698.9060S ribosomal protein L37a OS=Gossypium hirsutum G... [more]
RL37A_PSEMZ1.078e-4596.7060S ribosomal protein L37a OS=Pseudotsuga menziesi... [more]
R37A1_ARATH6.988e-4594.51Putative 60S ribosomal protein L37a-1 OS=Arabidops... [more]
R37A2_ARATH1.557e-4493.4160S ribosomal protein L37a-2 OS=Arabidopsis thalia... [more]
RL37A_BRARA3.834e-4392.3960S ribosomal protein L37a OS=Brassica rapa GN=RPL... [more]
RL37A_OSTLU6.335e-3880.2260S ribosomal protein L37a OS=Ostreococcus lucimar... [more]
RL37A_OSTTA5.363e-3779.1260S ribosomal protein L37a OS=Ostreococcus tauri G... [more]
RL37A_CRYST5.549e-3473.6360S ribosomal protein L37a OS=Cryptochiton steller... [more]
RL37A_DICDI6.784e-3271.5960S ribosomal protein L37a OS=Dictyostelium discoi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01I05_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01I05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832221 ID=CF832221; Name=CF832221; organism=Citrus sinensis; type=EST; length=713bp
TTTTTTTTTTCCGTTTAATAAAGAGATTCAAATTCAAAACTTTTTAAACC
ATATATCCAAGCATAGAAATTCCTTTAGACAATCCTGCCCCAGGAATTAC
TCCTATCACAAATAAATGAAAAAAAAGATAGATTGGCAACAAAATTAACT
CTCGGTCTGTTCCCTCAGCCTCCGAATTGTACTCCTCACGGTCACAGCAC
TAGCAGTATTCAAAGTGTAAGCACCTCCAGCTTTCACCTTGCCACAGTCT
TTGCAACCCCAGATTCCCACAGCCTTCCTCTTCACAGCATACTTCCCACA
GAATTCACAGAAGTACTTGCTGTGTTGACTGACCTCCATCTTCTTAATCT
GCTTACGCAGACTGGCACCATAACGGGTACCATACTTCCCAACAATTCCT
GCCTTCTTGGTCCTCTTTGTCATTTTGCAGAAGCAGACCAGAAACTCTAA
AAATCGCACTTGCTGCTGCTGAGAATAGAGAGAGATGAGAGTAGCCGAGG
GTTTTTTTTTTTTTTTTTTTTTTTTGGGGGACACACACAAAAACTTTTAT
TGATTTATTTCCTTTTTCAGGAAAATACTTAGCTCAAAAGTAAACAAAAA
GATTGCTTGTACGTCTCAAGAAATCTTATAAGTTGAACTAAACCATACTA
AAACATTGTCATGATTGATAGGTAATAGTATACCTATCATTTATTTAATT
AAACCAAACCGAA
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