CF832250

Overview
NameCF832250
Unique NameCF832250
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length728
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1009 contig Csv1_Contig1009:1..728. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832250 vs. ExPASy Swiss-Prot
Match: AG_TOBAC (Floral homeotic protein AGAMOUS OS=Nicotiana tabacum GN=AG1 PE=2 SV=1)

HSP 1 Score: 288.886 bits (738), Expect = 1.896e-77
Identity = 143/181 (79.01%), Postives = 166/181 (91.71%), Query Frame = 3
Query:  186 MAFPNELAAGREELSPKRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNSVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHN 728
            M F ++L     E+SP+RK+GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEV+LIVFSSRGRLYEY+NNSVK+TI+RYKKA +D+SNTGSI EANAQ+YQQEA+KLR QI N+QN NRNMLGESL+ L+ ++LKN+E ++EKGIS+IRSKKNELLFAEIEYMQKRE+DLHN
Sbjct:    1 MDFQSDLT---REISPQRKLGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVKATIERYKKACSDSSNTGSISEANAQYYQQEASKLRAQIGNLQNQNRNMLGESLAALSLRDLKNLEQKIEKGISKIRSKKNELLFAEIEYMQKREIDLHN 178          
BLAST of CF832250 vs. ExPASy Swiss-Prot
Match: AG_SOLLC (Floral homeotic protein AGAMOUS OS=Solanum lycopersicum GN=AG1 PE=2 SV=1)

HSP 1 Score: 288.115 bits (736), Expect = 3.234e-77
Identity = 141/181 (77.90%), Postives = 165/181 (91.16%), Query Frame = 3
Query:  186 MAFPNELAAGREELSPKRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNSVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHN 728
            M F ++L     E+SP+RK+GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEV+L+VFS+RGRLYEY+NNSVK+TI+RYKKA +D+SNTGS+ EANAQ+YQQEA+KLR QI N+ N NRNM+GE+L+G+  KELKN+E R+EKGIS+IRSKKNELLFAEIEYMQKREVDLHN
Sbjct:    1 MDFQSDLT---REISPQRKLGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSNRGRLYEYANNSVKATIERYKKACSDSSNTGSVSEANAQYYQQEASKLRAQIGNLMNQNRNMMGEALAGMKLKELKNLEQRIEKGISKIRSKKNELLFAEIEYMQKREVDLHN 178          
BLAST of CF832250 vs. ExPASy Swiss-Prot
Match: AG_PETHY (Floral homeotic protein AGAMOUS OS=Petunia hybrida GN=AG1 PE=2 SV=1)

HSP 1 Score: 287.345 bits (734), Expect = 5.516e-77
Identity = 141/181 (77.90%), Postives = 165/181 (91.16%), Query Frame = 3
Query:  186 MAFPNELAAGREELSPKRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNSVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHN 728
            M F ++L     E+SP+RK+GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEV+LIVFSSRGRLYEY+NNSVK+TI+RYKKA +D+SNTGSI EANAQ+YQQEA+KLR QI N+QN NRN LGESL+ LN ++L+N+E ++EKGIS+IR+KKNELLFAEIEYMQKRE+DLHN
Sbjct:    1 MEFQSDLT---REISPQRKLGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVKATIERYKKACSDSSNTGSIAEANAQYYQQEASKLRAQIGNLQNQNRNFLGESLAALNLRDLRNLEQKIEKGISKIRAKKNELLFAEIEYMQKREIDLHN 178          
BLAST of CF832250 vs. ExPASy Swiss-Prot
Match: AG_PANGI (Floral homeotic protein AGAMOUS OS=Panax ginseng GN=AG2 PE=2 SV=1)

HSP 1 Score: 276.174 bits (705), Expect = 1.272e-73
Identity = 135/168 (80.36%), Postives = 155/168 (92.26%), Query Frame = 3
Query:  225 LSPKRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNSVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHN 728
            LSP+RK+GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEV+LIVFS+RGRLYEY+NNSVK TI+RYKKA  D+ NT S+ EANAQFYQQEA+KLR +IS++Q +NRNM+GESL  L  ++LK +ET+LEKGISRIRSKKNELLFAEIEYMQK+E+DLHN
Sbjct:   11 LSPQRKLGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANNSVKGTIERYKKACTDSPNTSSVSEANAQFYQQEASKLRQEISSIQKNNRNMMGESLGSLTVRDLKGLETKLEKGISRIRSKKNELLFAEIEYMQKKEIDLHN 178          
BLAST of CF832250 vs. ExPASy Swiss-Prot
Match: AG_BRANA (Floral homeotic protein AGAMOUS OS=Brassica napus GN=AG1 PE=2 SV=1)

HSP 1 Score: 271.552 bits (693), Expect = 3.132e-72
Identity = 136/181 (75.14%), Postives = 159/181 (87.85%), Query Frame = 3
Query:  186 MAFPNELAAGREELSPKRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNSVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHN 728
            MA+  EL     E SP+RK GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEV+LIVFSSRGRLYEYSNNSVK TI+RYKKA +D SNTGS+ E NAQ+YQQE+AKLR QI ++QNSNR ++GE++  ++ KEL+N+E RL++ ++RIRSKKNELLFAEI+YMQKREVDLHN
Sbjct:    1 MAYQMELGG---ESSPQRKAGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNNSVKGTIERYKKAISDNSNTGSVAEINAQYYQQESAKLRQQIISIQNSNRQLMGETIGSMSPKELRNLEGRLDRSVNRIRSKKNELLFAEIDYMQKREVDLHN 178          
BLAST of CF832250 vs. ExPASy Swiss-Prot
Match: AG_ARATH (Floral homeotic protein AGAMOUS OS=Arabidopsis thaliana GN=AG PE=1 SV=2)

HSP 1 Score: 270.781 bits (691), Expect = 5.343e-72
Identity = 136/181 (75.14%), Postives = 159/181 (87.85%), Query Frame = 3
Query:  186 MAFPNELAAGREELSPKRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNSVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHN 728
            MA+ +EL     + SP RK GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEV+LIVFSSRGRLYEYSNNSVK TI+RYKKA +D SNTGS+ E NAQ+YQQE+AKLR QI ++QNSNR ++GE++  ++ KEL+N+E RLE+ I+RIRSKKNELLF+EI+YMQKREVDLHN
Sbjct:    1 MAYQSELGG---DSSPLRKSGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNNSVKGTIERYKKAISDNSNTGSVAEINAQYYQQESAKLRQQIISIQNSNRQLMGETIGSMSPKELRNLEGRLERSITRIRSKKNELLFSEIDYMQKREVDLHN 178          
BLAST of CF832250 vs. ExPASy Swiss-Prot
Match: AGL5_ARATH (Agamous-like MADS-box protein AGL5 OS=Arabidopsis thaliana GN=AGL5 PE=2 SV=1)

HSP 1 Score: 259.61 bits (662), Expect = 1.232e-68
Identity = 128/176 (72.73%), Postives = 152/176 (86.36%), Query Frame = 3
Query:  201 ELAAGREELSPKRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNSVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHN 728
            E  A  E     +K+GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEV+L++FS+RGRLYEY+NNSV+ TI+RYKKA +D  N  +I EAN Q+YQQEA+KLR QI ++QN NR++LGESL  LNFKELKN+E+RLEKGISR+RSKK+E+L AEIEYMQKRE++L N
Sbjct:    2 EGGASNEVAESSKKIGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVIFSTRGRLYEYANNSVRGTIERYKKACSDAVNPPTITEANTQYYQQEASKLRRQIRDIQNLNRHILGESLGSLNFKELKNLESRLEKGISRVRSKKHEMLVAEIEYMQKREIELQN 177          
BLAST of CF832250 vs. ExPASy Swiss-Prot
Match: AGL1_ARATH (Agamous-like MADS-box protein AGL1 OS=Arabidopsis thaliana GN=AGL1 PE=1 SV=1)

HSP 1 Score: 259.225 bits (661), Expect = 1.609e-68
Identity = 129/177 (72.88%), Postives = 152/177 (85.88%), Query Frame = 3
Query:  201 ELAAGREELSPKRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNSVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDL-HN 728
            E      +    +K+GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEV+L++FS+RGRLYEY+NNSV+ TI+RYKKA +D  N  S+ EAN Q+YQQEA+KLR QI ++QNSNR+++GESL  LNFKELKN+E RLEKGISR+RSKKNELL AEIEYMQKRE++L HN
Sbjct:    2 EEGGSSHDAESSKKLGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVIFSTRGRLYEYANNSVRGTIERYKKACSDAVNPPSVTEANTQYYQQEASKLRRQIRDIQNSNRHIVGESLGSLNFKELKNLEGRLEKGISRVRSKKNELLVAEIEYMQKREMELQHN 178          
BLAST of CF832250 vs. ExPASy Swiss-Prot
Match: MADS3_ORYSJ (MADS-box transcription factor 3 OS=Oryza sativa subsp. japonica GN=MADS3 PE=2 SV=1)

HSP 1 Score: 250.751 bits (639), Expect = 5.722e-66
Identity = 121/163 (74.23%), Postives = 151/163 (92.64%), Query Frame = 3
Query:  243 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNSVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSN-RNMLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHN 728
            MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEV+LIVFSSRGRLYEY+NNSVKST++RYKKA +DTSN+G++ E NAQ YQQE++KLR QIS++QN+N R ++G+S++ ++ ++LK +E RLEKGI++IR++KNELL+AE+EYMQKREV+L N
Sbjct:    1 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVKSTVERYKKANSDTSNSGTVAEVNAQHYQQESSKLRQQISSLQNANSRTIVGDSINTMSLRDLKQVENRLEKGIAKIRARKNELLYAEVEYMQKREVELQN 163          
BLAST of CF832250 vs. ExPASy Swiss-Prot
Match: MAD58_ORYSJ (MADS-box transcription factor 58 OS=Oryza sativa subsp. japonica GN=MADS58 PE=2 SV=1)

HSP 1 Score: 244.588 bits (623), Expect = 4.100e-64
Identity = 122/182 (67.03%), Postives = 151/182 (82.97%), Query Frame = 3
Query:  186 MAFPNELAAGREELSPKRKMG-RGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNSVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHN 728
            +A P    +G        K+G RGKIEIKRIENTTNRQVTFCKRR+GLLKKAYELSVLCDAEV+L+VFSSRGRLYEYSNNSVK TI+RYKKA +DTSN  ++ E NAQ YQQEAAKL+ QI+N+QNSNR ++G++++ +N +ELK +E RL+KG+ +IR++KNELL AEIEYMQ+RE +L N
Sbjct:   23 VASPGSGGSGGSGSVGAEKIGSRGKIEIKRIENTTNRQVTFCKRRSGLLKKAYELSVLCDAEVALVVFSSRGRLYEYSNNSVKETIERYKKANSDTSNASTVAEINAQHYQQEAAKLKQQITNLQNSNRTLVGDNITTMNHRELKQLEGRLDKGLGKIRARKNELLCAEIEYMQRRETELQN 204          
The following BLAST results are available for this feature:
BLAST of CF832250 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 121
Match NameE-valueIdentityDescription
AG_TOBAC1.896e-7779.01Floral homeotic protein AGAMOUS OS=Nicotiana tabac... [more]
AG_SOLLC3.234e-7777.90Floral homeotic protein AGAMOUS OS=Solanum lycoper... [more]
AG_PETHY5.516e-7777.90Floral homeotic protein AGAMOUS OS=Petunia hybrida... [more]
AG_PANGI1.272e-7380.36Floral homeotic protein AGAMOUS OS=Panax ginseng G... [more]
AG_BRANA3.132e-7275.14Floral homeotic protein AGAMOUS OS=Brassica napus ... [more]
AG_ARATH5.343e-7275.14Floral homeotic protein AGAMOUS OS=Arabidopsis tha... [more]
AGL5_ARATH1.232e-6872.73Agamous-like MADS-box protein AGL5 OS=Arabidopsis ... [more]
AGL1_ARATH1.609e-6872.88Agamous-like MADS-box protein AGL1 OS=Arabidopsis ... [more]
MADS3_ORYSJ5.722e-6674.23MADS-box transcription factor 3 OS=Oryza sativa su... [more]
MAD58_ORYSJ4.100e-6467.03MADS-box transcription factor 58 OS=Oryza sativa s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01I22_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01I22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832250 ID=CF832250; Name=CF832250; organism=Citrus sinensis; type=EST; length=728bp
CCGTTTAACTTTCACTTTCTCTTCTGCTTCTCTCCCTGCTCTCTTCTCAT
TTTTTGTTAAGTAAGAAAGAAGAGAGAAATCCCAAATCCTGCTGAATCCT
GCTGAAACCTTTGTTTCTGCTGTCCTTTTGATAATCAAAATCATTCTACA
TTCCTTTGGTTAGATAGCAGGTGGTCAAGAAAAGAATGGCGTTTCCAAAT
GAATTAGCAGCAGGAAGAGAGGAATTATCACCAAAGAGAAAAATGGGGAG
AGGAAAGATCGAGATCAAGCGGATCGAAAACACAACAAATCGCCAAGTGA
CCTTCTGCAAGAGGCGCAATGGTTTGCTCAAGAAAGCTTACGAATTATCT
GTTCTTTGTGATGCTGAGGTTTCTCTTATCGTCTTCTCCAGCCGCGGCCG
CCTTTATGAGTATTCCAACAACAGTGTGAAATCAACAATTGACAGGTACA
AGAAGGCCACTGCAGATACCTCAAATACTGGGTCTATCTGTGAAGCAAAT
GCTCAGTTCTACCAGCAAGAAGCTGCCAAGCTGAGGATACAAATTAGCAA
TATGCAAAATTCAAACAGAAACATGTTGGGTGAATCACTAAGTGGGTTAA
ATTTCAAGGAACTCAAGAACATGGAGACTCGTTTAGAGAAAGGTATTAGC
AGAATCCGATCTAAAAAGAATGAGCTGCTGTTTGCAGAAATTGAGTACAT
GCAGAAGAGGGAAGTTGACTTGCACAAC
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