CF832275

Overview
NameCF832275
Unique NameCF832275
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length653
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13417 contig Csv1_Contig13417:517..1169. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832275 vs. ExPASy Swiss-Prot
Match: NEP1_NEPGR (Aspartic proteinase nepenthesin-1 OS=Nepenthes gracilis GN=nep1 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.001e-15
Identity = 53/162 (32.72%), Postives = 77/162 (47.53%), Query Frame = -2
Query:  176 SLYYVNLLAIRVGRRVVDIPPGALQFNPTTGAG-TIIDSGTVFTSLVAPAYTAVRDVFRRCVGSNLTVTSLGGLDTCYSVP-----IVAPTITLMFSGMNVTLPQDNLIIHSIAGSITCLAMAAAPDNVNSVLNVIANMQQQNHRILYDVPNSRLGVARELC 643
            + YY+ L  + VG   + I P A   N   G G  IIDSGT  T  V  AY +VR  F   +   +   S  G D C+  P     +  PT  + F G ++ LP +N  I S +  + CLAM ++       +++  N+QQQN  ++YD  NS +  A   C
Sbjct:  278 TFYYITLNGLSVGSTRLPIDPSAFALNSNNGTGGIIIDSGTTLTYFVNNAYQSVRQEFISQINLPVVNGSSSGFDLCFQTPSDPSNLQIPTFVMHFDGGDLELPSENYFI-SPSNGLICLAMGSSSQG----MSIFGNIQQQNMLVVYDTGNSVVSFASAQC 434          
BLAST of CF832275 vs. ExPASy Swiss-Prot
Match: NEP2_NEPGR (Aspartic proteinase nepenthesin-2 OS=Nepenthes gracilis GN=nep2 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.204e-14
Identity = 51/159 (32.08%), Postives = 73/159 (45.91%), Query Frame = -2
Query:  176 YYVNLLAIRVGRRVVDIPPGALQFNPTTGAGTIIDSGTVFTSLVAPAYTAVRDVFRRCVGSNLTVTSLGGLDTCYSVP-----IVAPTITLMFSGMNVTLPQDNLIIHSIAGSITCLAMAAAPDNVNSVLNVIANMQQQNHRILYDVPNSRLGVARELC 637
            YY+ L  I VG   + IP    Q       G IIDSGT  T L   AY AV   F   +       S  GL TC+  P     +  P I++ F G  + L + N++I S A  + CLAM ++       +++  N+QQQ  ++LYD+ N  +      C
Sbjct:  281 YYITLQGITVGGDNLGIPSSTFQLQDDGTGGMIIDSGTTLTYLPQDAYNAVAQAFTDQINLPTVDESSSGLSTCFQQPSDGSTVQVPEISMQFDGGVLNLGEQNILI-SPAEGVICLAMGSSS---QLGISIFGNIQQQETQVLYDLQNLAVSFVPTQC 435          
The following BLAST results are available for this feature:
BLAST of CF832275 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
NEP1_NEPGR1.001e-1532.72Aspartic proteinase nepenthesin-1 OS=Nepenthes gra... [more]
NEP2_NEPGR4.204e-1432.08Aspartic proteinase nepenthesin-2 OS=Nepenthes gra... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_01J16_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01J16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832275 ID=CF832275; Name=CF832275; organism=Citrus sinensis; type=EST; length=653bp
TTTTTTTGACAAATAATATTATTTGGTTCTCATTAGAGTCCCCACAATTC
CTCCCATAAAAAGTTAATTAGAAATAATGACAAACAAACCTCACGCGGCT
AAAATTACCCATTACAGGACCCACAAGAAAAAGGGAAAACAAGTACAAAC
TTATCTCACAATTCTATATCTAAGTGCAAAGCTCACGGGCGACACCGAGC
CTTGAATTGGGCACATCATAGAGGATTCTGTGGTTTTGTTGCTGCATATT
GGCAATGACATTAAGCACTGAGTTGACGTTGTCTGGAGCTGCAGCCATGG
CCAAGCATGTGATGCTCCCTGCAATGCTGTGGATTATAAGGTTGTCTTGT
GGTAGAGTCACGTTCATGCCTGAGAACATCAACGTGATTGTCGGTGCAAC
GATTGGGACCGAGTAGCACGTGTCTAATCCGCCTAGGGATGTCACTGTTA
AGTTACTCCCTACGCATCTACGGAACACGTCTCTCACTGCGGTGTAAGCT
GGCGCCACCAGACTGGTAAAAACTGTGCCAGAATCAATAATAGTGCCAGC
GCCGGTTGTGGGATTGAACTGTAAGGCACCAGGTGGGATATCAACAACTC
TTCTGCCAACCCTAATGGCCAACAAATTAACATAGTAAAGTGATGATCTT
CCC
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