CF832335

Overview
NameCF832335
Unique NameCF832335
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length755
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13711 contig Csv1_Contig13711:592..1346. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832335 vs. ExPASy Swiss-Prot
Match: FATA_CORSA (Oleoyl-acyl carrier protein thioesterase, chloroplastic (Fragment) OS=Coriandrum sativum GN=FATA PE=2 SV=1)

HSP 1 Score: 449.899 bits (1156), Expect = 6.878e-126
Identity = 217/246 (88.21%), Postives = 235/246 (95.53%), Query Frame = 1
Query:   13 SLADRLRLGTLTEDGLSYKEKFIVRCYEVGINKTATVETIANLLQEVGCNHAQSVGFSTDGFATTTTMRKLHLIWVTARMHIEIYKYPAWSDVVEIETWCQSEGRIGTRRDWILKDYATGEVIGRATSKWVMMNQDTRRLQKVSDDVREEYLVFCPRELRLAFPEENSSSSRKISKLEDPAQYSRLGLIPRRADLDMNQHVNNVTYIGWLLESMPQDVIDTHELQTITLDYRRECQQDDVVDSLTS 750
            SLA++LRLG+LTEDGLSYKEKFIVRCYEVGINKTATVETIANLLQEVG NHAQSVGFSTDGFATT TMRKLHLIWVTARMHIEIY+YPAWSDVVEIETWCQSEGRIGTRRDWI+KD+AT EVIGRATSKWVMMNQDTRRLQKVSDDVR+EYLVFCP+  RL+FPEEN+ S +KISKLEDPAQ+SRLGL PRRADLDMNQHVNNV YIGW+LES+P++V+ THEL+TITLDYRRECQ DDVVDSLTS
Sbjct:   65 SLAEKLRLGSLTEDGLSYKEKFIVRCYEVGINKTATVETIANLLQEVGGNHAQSVGFSTDGFATTPTMRKLHLIWVTARMHIEIYRYPAWSDVVEIETWCQSEGRIGTRRDWIIKDFATDEVIGRATSKWVMMNQDTRRLQKVSDDVRDEYLVFCPKTPRLSFPEENNKSLKKISKLEDPAQHSRLGLSPRRADLDMNQHVNNVAYIGWVLESIPKEVLYTHELETITLDYRRECQHDDVVDSLTS 310          
BLAST of CF832335 vs. ExPASy Swiss-Prot
Match: FATB_CUPHO (Myristoyl-acyl carrier protein thioesterase, chloroplastic OS=Cuphea hookeriana GN=FATB1 PE=2 SV=1)

HSP 1 Score: 241.506 bits (615), Expect = 3.715e-63
Identity = 118/249 (47.39%), Postives = 160/249 (64.26%), Query Frame = 1
Query:    7 PCSLADRLRLGTLTEDGLSYKEKFIVRCYEVGINKTATVETIANLLQEVGCNHAQSVGFSTDGFATTTTMRKLHLIWVTARMHIEIYKYPAWSDVVEIETWCQSEGRIGTRRDWILKDYATGEVIGRATSKWVMMNQDTRRLQKVSDDVREEYLVFCPRELRLAFPEENSSSSRKISKL-EDPAQYSRLGLIPRRADLDMNQHVNNVTYIGWLLESMPQDVIDTHELQTITLDYRRECQQDDVVDSLTS 750
            P  L D   LG++ +DGL +++ F +R YE+G ++TA++ET+ N LQE   NH +  G S DGF  T  M K  LIWV A+M + + +YP W D VE+ TW    G+ G RRDW++ D  TGE++ RA+S WVMMNQ TRRL K+ D+VR E          +  P       RK+ KL E  A   R GL PR  DLD+NQHVNNV YIGW+LES P +V++T EL ++TL+YRREC ++ V++SLT+
Sbjct:  119 PDMLVDPFGLGSIVQDGLVFRQNFSIRSYEIGADRTASIETVMNHLQETALNHVKIAGLSNDGFGRTPEMYKRDLIWVVAKMQVMVNRYPTWGDTVEVNTWVAKSGKNGMRRDWLISDCNTGEILTRASSVWVMMNQKTRRLSKIPDEVRNEI-----EPHFVDSPPVIEDDDRKLPKLDEKTADSIRKGLTPRWNDLDVNQHVNNVKYIGWILESTPPEVLETQELCSLTLEYRRECGRESVLESLTA 362          
BLAST of CF832335 vs. ExPASy Swiss-Prot
Match: FATB_GOSHI (Myristoyl-acyl carrier protein thioesterase, chloroplastic OS=Gossypium hirsutum GN=FATB1 PE=1 SV=1)

HSP 1 Score: 233.032 bits (593), Expect = 1.321e-60
Identity = 111/249 (44.58%), Postives = 164/249 (65.86%), Query Frame = 1
Query:    7 PCSLADRLRLGTLTEDGLSYKEKFIVRCYEVGINKTATVETIANLLQEVGCNHAQSVGFSTDGFATTTTMRKLHLIWVTARMHIEIYKYPAWSDVVEIETWCQSEGRIGTRRDWILKDYATGEVIGRATSKWVMMNQDTRRLQKVSDDVREEYLVFCPRELRLAFPEENSSSSRKISKLED-PAQYSRLGLIPRRADLDMNQHVNNVTYIGWLLESMPQDVIDTHELQTITLDYRRECQQDDVVDSLTS 750
            P  + D   +G + +DGL + + F +R YE+G ++TA++ET+ N LQE   NH +S G   +GF  T  M K +LIWV  RM + + +YP W DVV+++TW  + G+ G RRDW++ +  TGE++ RATS WVMMN+ TRRL K+ ++VR E   F      +      +  S+K+ KL+D  A++   GL P+ +DLD+NQHVNNV YIGW+LES P  ++++HEL  +TL+YRREC +D V+ SLT+
Sbjct:  115 PDMVIDPFGIGKIVQDGLVFSQNFSIRSYEIGADQTASIETLMNHLQETAINHCRSAGLLGEGFGATPEMCKKNLIWVVTRMQVVVDRYPTWGDVVQVDTWVSASGKNGMRRDWLVSNSETGEILTRATSVWVMMNKLTRRLSKIPEEVRGEIEPFFMNSDPVL-----AEDSQKLVKLDDSTAEHVCKGLTPKWSDLDVNQHVNNVKYIGWILESAPLPILESHELSALTLEYRRECGRDSVLQSLTT 358          
BLAST of CF832335 vs. ExPASy Swiss-Prot
Match: FATB_CINCA (Myristoyl-acyl carrier protein thioesterase, chloroplastic OS=Cinnamomum camphora GN=FATB1 PE=2 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 5.033e-52
Identity = 99/233 (42.49%), Postives = 146/233 (62.66%), Query Frame = 1
Query:   55 GLSYKEKFIVRCYEVGINKTATVETIANLLQEVGCNHAQSVGFSTDGFATTTTMRKLHLIWVTARMHIEIYKYPAWSDVVEIETWCQSEGRIGTRRDWILKDYATGEVIGRATSKWVMMNQDTRRLQKVSDDVREEYLVFCPREL-RLAFPEENSSSSRKISKLEDPAQYSRLGLIPRRADLDMNQHVNNVTYIGWLLESMPQDVIDTHELQTITLDYRRECQQDDVVDSLTS 750
            GL ++  F +R YEVG +++ ++  + N LQE   NHA+SVG   DGF TT  M K  LIWV  R H+ + +YPAW D VE+E W  + G  G R D++++D  TGE++ R TS  VMMN  TRRL K+ ++VR E     P  +  +A  +E     +K++  +  A Y + GL PR  DLD+NQHVNN+ Y+ W+LE++P  + ++H + + T++YRREC  D V+ SLT+
Sbjct:  104 GLVFRRTFAIRSYEVGPDRSTSIVAVMNHLQEAALNHAKSVGILGDGFGTTLEMSKRDLIWVVKRTHVAVERYPAWGDTVEVECWVGASGNNGRRHDFLVRDCKTGEILTRCTSLSVMMNTRTRRLSKIPEEVRGE---IGPAFIDNVAVKDEEIKKPQKLN--DSTADYIQGGLTPRWNDLDINQHVNNIKYVDWILETVPDSIFESHHISSFTIEYRRECTMDSVLQSLTT 331          
BLAST of CF832335 vs. ExPASy Swiss-Prot
Match: FATB_UMBCA (Lauroyl-acyl carrier protein thioesterase, chloroplastic OS=Umbellularia californica GN=FATB1 PE=1 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 2.762e-50
Identity = 98/236 (41.53%), Postives = 144/236 (61.02%), Query Frame = 1
Query:   55 GLSYKEKFIVRCYEVGINKTATVETIANLLQEVGCNHAQSVGFSTDGFATTTTMRKLHLIWVTARMHIEIYKYPAWSDVVEIETWCQSEGRIGTRRDWILKDYATGEVIGRATSKWVMMNQDTRRLQKVSDDVREEYLVFCPRELRLAFPEE---NSSSSRKISKLED-PAQYSRLGLIPRRADLDMNQHVNNVTYIGWLLESMPQDVIDTHELQTITLDYRRECQQDDVVDSLTS 750
            GL ++  F +R YEVG +++ ++  + N +QE   NHA+SVG   DGF TT  M K  L+WV  R H+ + +YP W D VE+E W  + G  G RRD++++D  TGE++ R TS  V+MN  TRRL  + D+VR         E+  AF +         +K+ KL D  A Y + GL PR  DLD+NQHVNN+ Y+ W+ E++P  + ++H + + TL+YRREC +D V+ SLT+
Sbjct:  104 GLVFRRTFAIRSYEVGPDRSTSILAVMNHMQEATLNHAKSVGILGDGFGTTLEMSKRDLMWVVRRTHVAVERYPTWGDTVEVECWIGASGNNGMRRDFLVRDCKTGEILTRCTSLSVLMNTRTRRLSTIPDEVR--------GEIGPAFIDNVAVKDDEIKKLQKLNDSTADYIQGGLTPRWNDLDVNQHVNNLKYVAWVFETVPDSIFESHHISSFTLEYRRECTRDSVLRSLTT 331          
The following BLAST results are available for this feature:
BLAST of CF832335 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
FATA_CORSA6.878e-12688.21Oleoyl-acyl carrier protein thioesterase, chloropl... [more]
FATB_CUPHO3.715e-6347.39Myristoyl-acyl carrier protein thioesterase, chlor... [more]
FATB_GOSHI1.321e-6044.58Myristoyl-acyl carrier protein thioesterase, chlor... [more]
FATB_CINCA5.033e-5242.49Myristoyl-acyl carrier protein thioesterase, chlor... [more]
FATB_UMBCA2.762e-5041.53Lauroyl-acyl carrier protein thioesterase, chlorop... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_01L06_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01L06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832335 ID=CF832335; Name=CF832335; organism=Citrus sinensis; type=EST; length=755bp
TCCGGGCCTTGCAGCTTGGCGGATCGGCTCCGGCTGGGGACCTTGACGGA
AGACGGGTTGTCGTATAAGGAGAAGTTTATAGTGAGGTGTTATGAAGTTG
GAATTAACAAAACTGCCACTGTTGAGACCATTGCTAATCTCTTGCAGGAG
GTTGGATGTAACCATGCGCAAAGTGTTGGATTCTCAACAGATGGATTTGC
AACAACCACCACTATGAGAAAGCTGCATCTTATATGGGTGACGGCCCGTA
TGCACATTGAAATATATAAATACCCTGCTTGGAGTGATGTGGTTGAAATT
GAGACATGGTGCCAAAGTGAAGGAAGAATTGGAACTAGACGTGATTGGAT
TCTGAAGGACTATGCCACTGGTGAAGTTATTGGAAGAGCAACGAGCAAGT
GGGTGATGATGAACCAAGACACTAGGCGGCTTCAGAAAGTTAGTGATGAT
GTCCGAGAAGAGTATTTAGTCTTTTGTCCTCGAGAACTCAGGTTAGCTTT
TCCAGAGGAGAATAGTAGCAGCTCAAGGAAAATTTCAAAACTTGAAGATC
CTGCTCAGTATTCCCGGCTAGGGCTTATTCCCAGGAGAGCTGATCTGGAC
ATGAACCAGCATGTTAATAATGTCACCTACATTGGTTGGTTACTTGAGAG
CATGCCTCAAGATGTCATCGACACCCACGAACTCCAGACTATCACCTTAG
ATTACAGACGAGAATGCCAACAGGACGATGTAGTTGATTCCCTAACAAGT
GCAGA
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