CF832338

Overview
NameCF832338
Unique NameCF832338
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length834
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PPR45_ARATH (Pentatricopeptide repeat-containing protein At1g15510, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H73 PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 2.186e-38
Identity = 76/103 (73.79%), Postives = 83/103 (80.58%), Query Frame = -2
Query:  528 VLEGFYEKMKAVGFAG-SEYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGD 833
            VLEGFYEKM  VG    SE  SMD++E S+ EIFCGHSE  A+AFGLINT PGMPIWVTKNL  C +CH+TVKFISK VRR+I VRD EHFHHFKDG CSCGD
Sbjct:  764 VLEGFYEKMSEVGLTKISESSSMDETEISRDEIFCGHSERKAIAFGLINTVPGMPIWVTKNLSMCENCHDTVKFISKTVRREISVRDAEHFHHFKDGECSCGD 866          
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PP251_ARATH (Putative pentatricopeptide repeat-containing protein At3g23330 OS=Arabidopsis thaliana GN=PCMP-H32 PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.987e-23
Identity = 56/106 (52.83%), Postives = 66/106 (62.26%), Query Frame = -2
Query:  516 LEGFYEKMKAVGF-AGSEYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 830
            L+   E+M+  G+ A +  V  D  E  K E+  GHSE LAVAFG+INT PG  I VTKN+  C  CH  +KFISKI  R+I VRD   FHHF  G CSCGD  YW
Sbjct:  612 LKAVMEQMEKEGYVADTSGVLHDVDEEHKRELLFGHSERLAVAFGIINTEPGTTIRVTKNIRICTDCHVAIKFISKITEREIIVRDNSRFHHFNRGNCSCGD--YW 715          
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PP285_ARATH (Pentatricopeptide repeat-containing protein At3g57430, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H81 PE=2 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 2.595e-23
Identity = 54/106 (50.94%), Postives = 67/106 (63.21%), Query Frame = -2
Query:  516 LEGFYEKMKAVGFAGSEYVSMDKSEASKAEIF-CGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 830
            LE  +E+M+  G+       +   E  + EI  CGHSE LA+AFG++NT+PG  I V KNL  C  CH   KFISKIV R+I +RD   FH FK+GTCSCGD  YW
Sbjct:  787 LETLWERMRKEGYVPDTSCVLHNVEEDEKEILLCGHSEKLAIAFGILNTSPGTIIRVAKNLRVCNDCHLATKFISKIVDREIILRDVRRFHRFKNGTCSCGD--YW 890          
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PP224_ARATH (Pentatricopeptide repeat-containing protein At3g12770 OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.426e-23
Identity = 51/106 (48.11%), Postives = 68/106 (64.15%), Query Frame = -2
Query:  516 LEGFYEKMKAVGFAGSEYVSM-DKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 830
            +E    ++K  GF  ++  S+ D ++    E  C HSE +A+A+GLI+T  G P+ +TKNL  C +CH   K ISK+V R+I VRDT  FHHFKDG CSCGD  YW
Sbjct:  591 VEWIESRLKEGGFVANKDASLHDLNDEEAEETLCSHSERIAIAYGLISTPQGTPLRITKNLRACVNCHAATKLISKLVDREIVVRDTNRFHHFKDGVCSCGD--YW 694          
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PP210_ARATH (Pentatricopeptide repeat-containing protein At3g03580 OS=Arabidopsis thaliana GN=PCMP-H23 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 8.347e-22
Identity = 47/79 (59.49%), Postives = 53/79 (67.09%), Query Frame = -2
Query:  528 KSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGD 764
            + E  K  + CGHSE LA+AFGL+NT PG P+ V KNL  C  CH   K ISKIV R+I VRD   FH FKDGTCSC D
Sbjct:  802 EEEEEKRRLICGHSERLAIAFGLLNTEPGTPLQVMKNLRVCGDCHEVTKLISKIVGREILVRDANRFHLFKDGTCSCKD 880          
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PPR74_ARATH (Pentatricopeptide repeat-containing protein At1g47580, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H50 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.859e-21
Identity = 54/109 (49.54%), Postives = 68/109 (62.39%), Query Frame = -2
Query:  516 YEKMKAVGF----AG----SEYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 818
            Y K+K++G     AG    ++YV  D  E +K +    HSE LA+AFG+INT PG  I V KNL  C  CHN +K +S I  R+I VRD + FHHF+DG CSCGD  YW
Sbjct:  133 YVKLKSLGKEVRDAGYVPETKYVLHDIDEEAKEKALMHHSERLAIAFGIINTPPGTTIRVMKNLRICGDCHNFIKILSSIEDREIIVRDNKRFHHFRDGNCSCGD--YW 239          
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PP419_ARATH (Pentatricopeptide repeat-containing protein At5g46460, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H49 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.429e-21
Identity = 52/106 (49.06%), Postives = 66/106 (62.26%), Query Frame = -2
Query:  516 LEGFYEKMKAVGFAGSEYVSM-DKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 830
            LE   EK+K +G+A     ++ D  +  K E+   HSE LA+AFGLINT  G  + V KNL  C  CH  +K IS +V R+I +RD   FHHFK+GTCSCGD  YW
Sbjct:  594 LEFLREKLKELGYAPDYRSALHDVEDEQKEEMLWYHSERLAIAFGLINTVEGSAVTVMKNLRVCEDCHTVIKLISGVVGREIVLRDPIRFHHFKNGTCSCGD--YW 697          
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PPR53_ARATH (Pentatricopeptide repeat-containing protein At1g20230 OS=Arabidopsis thaliana GN=PCMP-H21 PE=2 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 3.172e-21
Identity = 46/89 (51.69%), Postives = 57/89 (64.04%), Query Frame = -2
Query:  516 EYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 782
            ++   D  E  + ++  GHSE LAV FGL+NT  G P+ V KNL  C  CH  +KFIS    R+IF+RDT  FHHFKDG CSCGD  +W
Sbjct:  674 DFALHDVEEQEQEQMLWGHSEKLAVVFGLLNTPDGTPLQVIKNLRICGDCHAVIKFISSYAGREIFIRDTNRFHHFKDGICSCGD--FW 760          
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PP316_ARATH (Pentatricopeptide repeat-containing protein At4g16835, mitochondrial OS=Arabidopsis thaliana GN=DYW10 PE=2 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 7.066e-21
Identity = 52/106 (49.06%), Postives = 64/106 (60.38%), Query Frame = -2
Query:  516 LEGFYEKMKAVGFAGS-EYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 830
            L+   +KMK  G+    E+   +  E  K ++   HSE LAVAFG I    G  I V KNL  C  CH  +KFIS+I +R+I VRDT  FHHFKDG+CSCGD  YW
Sbjct:  558 LKELEKKMKLAGYKPELEFALHNVEEEQKEKLLLWHSEKLAVAFGCIKLPQGSQIQVFKNLRICGDCHKAIKFISEIEKREIIVRDTTRFHHFKDGSCSCGD--YW 661          
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PP258_ARATH (Pentatricopeptide repeat-containing protein At3g26782, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H34 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 7.066e-21
Identity = 50/100 (50.00%), Postives = 61/100 (61.00%), Query Frame = -2
Query:  516 KMKAVGF-AGSEYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 812
            K+   G+ + +  V  D  E  K      HSE LA+AFG++NT PG  + V KNL  C  CHN +K ISKIV R+  VRD + FHHFKDG CSCGD  YW
Sbjct:  562 KLLEAGYVSNTSSVCHDVDEEEKEMTLRVHSEKLAIAFGIMNTVPGSTVNVVKNLRVCSDCHNVIKLISKIVDREFVVRDAKRFHHFKDGGCSCGD--YW 659          
The following BLAST results are available for this feature:
BLAST of CF832338 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
PPR45_ARATH2.186e-3873.79Pentatricopeptide repeat-containing protein At1g15... [more]
PP251_ARATH1.987e-2352.83Putative pentatricopeptide repeat-containing prote... [more]
PP285_ARATH2.595e-2350.94Pentatricopeptide repeat-containing protein At3g57... [more]
PP224_ARATH4.426e-2348.11Pentatricopeptide repeat-containing protein At3g12... [more]
PP210_ARATH8.347e-2259.49Pentatricopeptide repeat-containing protein At3g03... [more]
PPR74_ARATH1.859e-2149.54Pentatricopeptide repeat-containing protein At1g47... [more]
PP419_ARATH2.429e-2149.06Pentatricopeptide repeat-containing protein At5g46... [more]
PPR53_ARATH3.172e-2151.69Pentatricopeptide repeat-containing protein At1g20... [more]
PP316_ARATH7.066e-2149.06Pentatricopeptide repeat-containing protein At4g16... [more]
PP258_ARATH7.066e-2150.00Pentatricopeptide repeat-containing protein At3g26... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01L08_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01L08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832338 ID=CF832338; Name=CF832338; organism=Citrus sinensis; type=EST; length=834bp
TTTTTTTTTTTTTTTTTGAAATCAATCTACACAATTTTCATTTCACCTTT
AAGGTAAATTCTACTATATTTCACATGAAATATACATAAATAAAAAGAAT
AGCACTTTACCTACCTCGCACAACAATCTTGTTTAAATTATATTTTCCCT
TTTGGCAGCAAGAATACAGTGACGCTATATCCATTGGGTGCATACATAAA
AGTACTACACGATACCTTGATGTCAGTTCCATAATCAAAGGGTGTGCAGT
AAATTGAACAGCAAACCAGCTTCTTTCCTTTTCAAGACTGCTGGTTAAAG
CGAGCTGAATAACTGTTCATCAGTGTTTCAAGCTCTTGGAGTTGGGACTA
CGATGTTCTCTGCTTTGCCTGGAATCCTACAATTTAGTTCAAGGGGCCAG
CCACTGCCCAAGTGTACAAGTTTCACCACAACCCTGAAACTCTCATCCTG
TATTTTTGTACAAGTTATAGAATGCTTAAAAAAAATCTTTAGCTCTCTGA
CCTGTCTAGTCTTCCCCAGTAACCCTCATCACCACAAGAGCAGGTTCCAT
CCTTGAAGTGGTGAAAATGTTCAGTATCCCTAACAAAAATGTCTCTGCGT
ACAATCTTGGAGATGAACTTGACAGTGTTGTGACAACTTGGGCATGTATA
GAGATTCTTTGTAACCCAAATAGGCATCCCCGGGGCAGTATTTATGAGGC
CAAATGCCACAGCCAACATCTCACTGTGACCACAAAAGATCTCAGCTTTT
GAAGCTTCACTTTTGTCCATGGACACATATTCTGAACCAGCAAAACCAAC
TGCTTTCATTTTCTCATAAAATCCCTCCAAAACT
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