CF832350

Overview
NameCF832350
Unique NameCF832350
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length665
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2512 contig Csv1_Contig2512:78..742. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832350 vs. ExPASy Swiss-Prot
Match: GLUA1_ORYSJ (Glutelin type-A 1 OS=Oryza sativa subsp. japonica GN=GLUA1 PE=1 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 3.895e-15
Identity = 45/139 (32.37%), Postives = 75/139 (53.96%), Query Frame = 3
Query:    6 LNTKNLPLVGEVGCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADPDGLAWFSIITTPNPIFTHLAGSIGTWKSLSPSVLEAAFNVPSDVEKQFRSKRANE 422
            LNT+N P++  V   A  V L   A+ SP ++ + A  V YI +G  R Q+V  +GK V    ++ G L I+P+ Y V K A  +G A+ +  T PN + +H+AG    +++L   VL  A+ +  +  ++ +  R +E
Sbjct:  340 LNTQNFPILSLVQMSAVKVNLYQNALLSPFWNIN-AHSVVYITQGRARVQVVNNNGKTVFNGELRRGQLLIIPQHYAVVKKAQREGCAYIAFKTNPNSMVSHIAGKSSIFRALPNDVLANAYRISREEAQRLKHNRGDE 477          
BLAST of CF832350 vs. ExPASy Swiss-Prot
Match: GLUA2_ORYSJ (Glutelin type-A 2 OS=Oryza sativa subsp. japonica GN=GLUA2 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.677e-15
Identity = 44/139 (31.65%), Postives = 76/139 (54.68%), Query Frame = 3
Query:    6 LNTKNLPLVGEVGCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADPDGLAWFSIITTPNPIFTHLAGSIGTWKSLSPSVLEAAFNVPSDVEKQFRSKRANE 422
            LN++N P++  V   A  V L   A+ SP ++ + A  + YI +G  + Q+V  +GK V    ++ G L IVP+ YVV K A  +G A+ +  T PN + +H+AG    +++L   VL  A+ +  +  ++ +  R +E
Sbjct:  340 LNSQNFPILNLVQMSAVKVNLYQNALLSPFWNIN-AHSIVYITQGRAQVQVVNNNGKTVFNGELRRGQLLIVPQHYVVVKKAQREGCAYIAFKTNPNSMVSHIAGKSSIFRALPTDVLANAYRISREEAQRLKHNRGDE 477          
BLAST of CF832350 vs. ExPASy Swiss-Prot
Match: SSG1_AVESA (12S seed storage globulin 1 OS=Avena sativa PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.253e-13
Identity = 43/139 (30.94%), Postives = 73/139 (52.52%), Query Frame = 3
Query:    6 LNTKNLPLVGEVGCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADPDGLAWFSIITTPNPIFTHLAGSIGTWKSLSPSVLEAAFNVPSDVEKQFRSKRANE 422
            LN+KN P +  V   A  V L   A+ SP ++ + A  V ++++G  R Q+V   G+ V    ++ G L I+P+ YVV K A+ +G  + S  TTPN + +++AG     ++L   VL  A+ +     +  ++ R  E
Sbjct:  351 LNSKNFPTLNLVQMSATRVNLYQNAILSPYWNIN-AHSVMHMIQGRARVQVVNNHGQTVFNDILRRGQLLIIPQHYVVLKKAEREGCQYISFKTTPNSMVSYIAGKTSILRALPVDVLANAYRISRQESQNLKNNRGEE 488          
BLAST of CF832350 vs. ExPASy Swiss-Prot
Match: GLUB5_ORYSJ (Glutelin type-B 5 OS=Oryza sativa subsp. japonica GN=GLUB5 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.761e-13
Identity = 42/139 (30.22%), Postives = 73/139 (52.52%), Query Frame = 3
Query:    6 LNTKNLPLVGEVGCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADPDGLAWFSIITTPNPIFTHLAGSIGTWKSLSPSVLEAAFNVPSDVEKQFRSKRANE 422
            LN++  P++  V   A  V L   A+ SP ++ + A  + YIV+G  R Q+V   GK V    ++ G L I+P+ YVV K A+ +G  + S  T  N + +HLAG    ++++   V+  A+ +  +  +  ++ R  E
Sbjct:  337 LNSQKFPILNLVQLSATRVNLYQNAILSPFWNVN-AHSLVYIVQGHARVQVVSNLGKTVFNGVLRPGQLLIIPQHYVVLKKAEHEGCQYISFKTNANSMVSHLAGKNSIFRAMPVDVIANAYRISREQARSLKNNRGEE 474          
BLAST of CF832350 vs. ExPASy Swiss-Prot
Match: GLUB4_ORYSJ (Glutelin type-B 4 OS=Oryza sativa subsp. japonica GN=GLUB4 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.761e-13
Identity = 42/139 (30.22%), Postives = 73/139 (52.52%), Query Frame = 3
Query:    6 LNTKNLPLVGEVGCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADPDGLAWFSIITTPNPIFTHLAGSIGTWKSLSPSVLEAAFNVPSDVEKQFRSKRANE 422
            LN++  P++  V   A  V L   A+ SP ++ + A  + YIV+G  R Q+V   GK V    ++ G L I+P+ YVV K A+ +G  + S  T  N + +HLAG    ++++   V+  A+ +  +  +  ++ R  E
Sbjct:  337 LNSQKFPILNLVQLSATRVNLYQNAILSPFWNVN-AHSLVYIVQGHARVQVVSNLGKTVFNGVLRPGQLLIIPQHYVVLKKAEHEGCQYISFKTNANSMVSHLAGKNSIFRAMPVDVIANAYRISREQARSLKNNRGEE 474          
BLAST of CF832350 vs. ExPASy Swiss-Prot
Match: GLUA3_ORYSJ (Glutelin type-A 3 OS=Oryza sativa subsp. japonica GN=GLUA3 PE=2 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 8.122e-13
Identity = 40/139 (28.78%), Postives = 76/139 (54.68%), Query Frame = 3
Query:    6 LNTKNLPLVGEVGCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADPDGLAWFSIITTPNPIFTHLAGSIGTWKSLSPSVLEAAFNVPSDVEKQFRSKRANE 422
            LN +  P++  V   A  V L   A+ SP ++ + A  V YI +G  R Q+V  +GK V +  ++ G L I+P+ +VV K A  +G ++ ++ T P+ + +H+AG    +++L   V+  A+ +  +  ++ +  R +E
Sbjct:  339 LNGQKFPILNLVQMSAVKVNLYQNALLSPFWNIN-AHSVVYITQGRARVQVVNNNGKTVFDGELRRGQLLIIPQHHVVIKKAQREGCSYIALKTNPDSMVSHMAGKNSIFRALPDDVVANAYRISREEARRLKHNRGDE 476          
BLAST of CF832350 vs. ExPASy Swiss-Prot
Match: SSG2_AVESA (12S seed storage globulin 2 OS=Avena sativa PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.061e-12
Identity = 42/139 (30.22%), Postives = 71/139 (51.08%), Query Frame = 3
Query:    6 LNTKNLPLVGEVGCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADPDGLAWFSIITTPNPIFTHLAGSIGTWKSLSPSVLEAAFNVPSDVEKQFRSKRANE 422
            LN+KN P +  V   A  V L   A+ SP ++ + A  V ++++G  R Q+V   G+ V    ++ G L I+P+ YVV K A+ +G  + S  T PN + + +AG     ++L   VL  A+ +     +  ++ R  E
Sbjct:  351 LNSKNFPTLNLVQMSATRVNLYQNAILSPYWNIN-AHSVMHMIQGRARVQVVNNHGQTVFNDILRRGQLLIIPQHYVVLKKAEREGCQYISFKTNPNSMVSQIAGKTSILRALPVDVLANAYRISRQEAQNLKNNRGEE 488          
BLAST of CF832350 vs. ExPASy Swiss-Prot
Match: GLUB2_ORYSJ (Glutelin type-B 2 OS=Oryza sativa subsp. japonica GN=GLUB2 PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.363e-12
Identity = 38/139 (27.34%), Postives = 73/139 (52.52%), Query Frame = 3
Query:    6 LNTKNLPLVGEVGCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADPDGLAWFSIITTPNPIFTHLAGSIGTWKSLSPSVLEAAFNVPSDVEKQFRSKRANE 422
            +N++  P++  +   A  V L   A+ SP ++ + A  + Y+++G  R Q+V   GK V +  ++ G L I+P+ Y V K A+ +G  + +I T  N   +HLAG    +++L   V+  A+ +  +  +  ++ R  E
Sbjct:  332 VNSQKFPILNLIQMSATRVNLYQNAILSPFWNVN-AHSLVYMIQGQSRVQVVSNFGKTVFDGVLRPGQLLIIPQHYAVLKKAEREGCQYIAIKTNANAFVSHLAGKNSVFRALPVDVVANAYRISREQARSIKNNRGEE 469          
BLAST of CF832350 vs. ExPASy Swiss-Prot
Match: GLUB1_ORYSJ (Glutelin type-B 1 OS=Oryza sativa subsp. japonica GN=GluB1-A PE=2 SV=3)

HSP 1 Score: 72.0182 bits (175), Expect = 3.086e-12
Identity = 38/139 (27.34%), Postives = 73/139 (52.52%), Query Frame = 3
Query:    6 LNTKNLPLVGEVGCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADPDGLAWFSIITTPNPIFTHLAGSIGTWKSLSPSVLEAAFNVPSDVEKQFRSKRANE 422
            +N++  P++  +   A  V L   A+ SP ++ + A  + Y+++G  R Q+V   GK V +  ++ G L I+P+ Y V K A+ +G  + +I T  N   +HLAG    +++L   V+  A+ +  +  +  ++ R  E
Sbjct:  336 VNSQKFPILNLIQMSATRVNLYQNAILSPFWNVN-AHSLVYMIQGRSRVQVVSNFGKTVFDGVLRPGQLLIIPQHYAVLKKAEREGCQYIAIKTNANAFVSHLAGKNSVFRALPVDVVANAYRISREQARSLKNNRGEE 473          
BLAST of CF832350 vs. ExPASy Swiss-Prot
Match: 13S1_FAGES (13S globulin seed storage protein 1 OS=Fagopyrum esculentum GN=FA02 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.457e-11
Identity = 38/141 (26.95%), Postives = 72/141 (51.06%), Query Frame = 3
Query:    6 LNTKNLPLVGEVGCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADPDGLAWFSIITTPNPIFTHLAGSIGTWKSLSPSVLEAAFNVPSDVEKQFRSKRANEAI 428
            +N+ NLP++  +   A  V L   A+  P ++ + A    Y+ RG GR Q+VG +G+ V +  V+ G + +VP+ + V   A  +GL W  +    N I + +AG     +++   VL  ++++    ++ FR K   + +
Sbjct:  411 VNSNNLPILEFIQLSAQHVVLYKNAILGPRWNLN-AHSALYVTRGEGRVQVVGDEGRSVFDDNVQRGQILVVPQGFAVVLKAGREGLEWVELKNDDNAITSPIAGKTSVLRAIPVEVLANSYDI--STKEAFRLKNGRQEV 548          
The following BLAST results are available for this feature:
BLAST of CF832350 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
GLUA1_ORYSJ3.895e-1532.37Glutelin type-A 1 OS=Oryza sativa subsp. japonica ... [more]
GLUA2_ORYSJ8.677e-1531.65Glutelin type-A 2 OS=Oryza sativa subsp. japonica ... [more]
SSG1_AVESA1.253e-1330.9412S seed storage globulin 1 OS=Avena sativa PE=2 S... [more]
GLUB5_ORYSJ4.761e-1330.22Glutelin type-B 5 OS=Oryza sativa subsp. japonica ... [more]
GLUB4_ORYSJ4.761e-1330.22Glutelin type-B 4 OS=Oryza sativa subsp. japonica ... [more]
GLUA3_ORYSJ8.122e-1328.78Glutelin type-A 3 OS=Oryza sativa subsp. japonica ... [more]
SSG2_AVESA1.061e-1230.2212S seed storage globulin 2 OS=Avena sativa PE=3 S... [more]
GLUB2_ORYSJ2.363e-1227.34Glutelin type-B 2 OS=Oryza sativa subsp. japonica ... [more]
GLUB1_ORYSJ3.086e-1227.34Glutelin type-B 1 OS=Oryza sativa subsp. japonica ... [more]
13S1_FAGES4.457e-1126.9513S globulin seed storage protein 1 OS=Fagopyrum e... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01L15_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01L15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832350 ID=CF832350; Name=CF832350; organism=Citrus sinensis; type=EST; length=665bp
ACGTTTTGAATACTAAGAACCTTCCTCTTGTTGGTGAGGTTGGATGTGGT
GCTGATCTTGTTAGGTTGGATGGCAAAGCCATGTGTTCTCCTGGTTTCTC
TTGTGATTCAGCCCTGCAAGTGACTTACATTGTTCGGGGCAGCGGCCGTG
CCCAAATTGTTGGTCCTGATGGCAAAAGAGTCTTGGAAACAACTGTAAAG
GCTGGTAATCTGTTCATAGTTCCAAGGTTCTATGTTGTTTCTAAGATTGC
TGACCCTGATGGCTTGGCTTGGTTCTCAATCATCACCACTCCCAATCCTA
TATTCACACACTTGGCTGGCAGCATTGGAACGTGGAAGTCATTATCTCCT
TCAGTGTTGGAGGCAGCTTTCAATGTTCCTTCCGATGTAGAAAAGCAGTT
CCGATCAAAGAGGGCCAATGAGGCTATTTTCTTCCCACCGCCGAACTAAG
CGAAGCAGCAGCCAGCACCCTTGCATTTTCTCTCTATCTGTTTCAATAAG
AGAAATTAAAAGGAAAAAACAAAGAAGTGTTTAGGGTTCTTGTTCGTAGT
AGTGGATGTTGTTAGGTGTGGTGCCCGTTTTAAGTTTTCTTTTGTAGTTT
TTTAAGTTTTTCTGTTGGATATAAAACTGAATTGTTCTATGGTTCTCTTA
TAAAATTGCCTTTTG
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