CF832367

Overview
NameCF832367
Unique NameCF832367
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length618
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10133 contig Csv1_Contig10133:14..631. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832367 vs. ExPASy Swiss-Prot
Match: RS27A_SOLTU (40S ribosomal protein S27a OS=Solanum tuberosum GN=UBI3 PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 4.531e-28
Identity = 55/57 (96.49%), Postives = 56/57 (98.25%), Query Frame = 3
Query:  330 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKAGGD 500
            LAVLQFYKVDD+GKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVY KAGGD
Sbjct:   24 LAVLQFYKVDDTGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD 80          
BLAST of CF832367 vs. ExPASy Swiss-Prot
Match: RS27A_SOLLC (40S ribosomal protein S27a OS=Solanum lycopersicum GN=UBI3 PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 4.531e-28
Identity = 55/57 (96.49%), Postives = 56/57 (98.25%), Query Frame = 3
Query:  330 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKAGGD 500
            LAVLQFYKVDD+GKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVY KAGGD
Sbjct:   24 LAVLQFYKVDDTGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD 80          
BLAST of CF832367 vs. ExPASy Swiss-Prot
Match: RS27A_LUPAL (40S ribosomal protein S27a OS=Lupinus albus PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 9.448e-26
Identity = 52/54 (96.30%), Postives = 52/54 (96.30%), Query Frame = 3
Query:  330 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKA 491
            LAVLQFYKVDDSGKVQRLRKECPN ECGAGTFMANHFDRHYCGKCG TYVYQKA
Sbjct:   24 LAVLQFYKVDDSGKVQRLRKECPNTECGAGTFMANHFDRHYCGKCGKTYVYQKA 77          
BLAST of CF832367 vs. ExPASy Swiss-Prot
Match: R27AB_ARATH (40S ribosomal protein S27a-2 OS=Arabidopsis thaliana GN=UBQ6 PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 6.124e-25
Identity = 51/55 (92.73%), Postives = 52/55 (94.55%), Query Frame = 3
Query:  330 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKAG 494
            LAVLQFYKVD SGKVQRLRKECPNA CGAGTFMA+HFDRHYCGKCGLTYVYQK G
Sbjct:   24 LAVLQFYKVDGSGKVQRLRKECPNATCGAGTFMASHFDRHYCGKCGLTYVYQKEG 78          
BLAST of CF832367 vs. ExPASy Swiss-Prot
Match: R27AC_ARATH (40S ribosomal protein S27a-3 OS=Arabidopsis thaliana GN=UBQ5 PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 7.998e-25
Identity = 50/55 (90.91%), Postives = 52/55 (94.55%), Query Frame = 3
Query:  330 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKAG 494
            LAVLQFYK+D SGKVQRLRKECPNA CGAGTFMA+HFDRHYCGKCGLTYVYQK G
Sbjct:   24 LAVLQFYKIDGSGKVQRLRKECPNATCGAGTFMASHFDRHYCGKCGLTYVYQKEG 78          
BLAST of CF832367 vs. ExPASy Swiss-Prot
Match: RS27A_ASPOF (40S ribosomal protein S27a OS=Asparagus officinalis PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 3.969e-24
Identity = 50/53 (94.34%), Postives = 51/53 (96.23%), Query Frame = 3
Query:  330 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQK 488
            LAVLQFYKVDD+GKV RLRKECPNAECGAGTFMANH DRHYCGKCGLTYVYQK
Sbjct:   24 LAVLQFYKVDDTGKVIRLRKECPNAECGAGTFMANHKDRHYCGKCGLTYVYQK 76          
BLAST of CF832367 vs. ExPASy Swiss-Prot
Match: RS27A_HORVU (40S ribosomal protein S27a OS=Hordeum vulgare GN=MUB1 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 9.777e-23
Identity = 51/56 (91.07%), Postives = 53/56 (94.64%), Query Frame = 3
Query:  330 LAVLQFYKVDDS-GKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVY-QKA 491
            LAVLQFYKVDD+ GKV RLRKECPNA+CGAGTFMANHFDRHYCGKCGLTYVY QKA
Sbjct:   24 LAVLQFYKVDDATGKVTRLRKECPNADCGAGTFMANHFDRHYCGKCGLTYVYNQKA 79          
BLAST of CF832367 vs. ExPASy Swiss-Prot
Match: UBL1_ORYSJ (Ubiquitin-like protein 1 OS=Oryza sativa subsp. japonica GN=UBL1 PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.715e-22
Identity = 52/55 (94.55%), Postives = 53/55 (96.36%), Query Frame = 3
Query:   78 EVESSDTIYNVKAKIQDKEGIPPDQQRLIFAGKQL*DGRTLADYNIQKESTLHLV 242
            EVESSDTI NVKAK+QDKEGIPPDQQRLIFAGKQL DGRTLADYNIQKESTLHLV
Sbjct:   16 EVESSDTIQNVKAKVQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70          
BLAST of CF832367 vs. ExPASy Swiss-Prot
Match: UBIQ_TRYCR (Ubiquitin OS=Trypanosoma cruzi PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.715e-22
Identity = 53/55 (96.36%), Postives = 53/55 (96.36%), Query Frame = 3
Query:   78 EVESSDTIYNVKAKIQDKEGIPPDQQRLIFAGKQL*DGRTLADYNIQKESTLHLV 242
            EVESSDTI NVKAKIQDKEGIPPDQQRLIFAGKQL DGRTLADYNIQKESTLHLV
Sbjct:   16 EVESSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70          
BLAST of CF832367 vs. ExPASy Swiss-Prot
Match: UBIQ_CHLRE (Ubiquitin OS=Chlamydomonas reinhardtii GN=UBI1 PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.715e-22
Identity = 53/55 (96.36%), Postives = 53/55 (96.36%), Query Frame = 3
Query:   78 EVESSDTIYNVKAKIQDKEGIPPDQQRLIFAGKQL*DGRTLADYNIQKESTLHLV 242
            EVESSDTI NVKAKIQDKEGIPPDQQRLIFAGKQL DGRTLADYNIQKESTLHLV
Sbjct:   16 EVESSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70          
The following BLAST results are available for this feature:
BLAST of CF832367 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
RS27A_SOLTU4.531e-2896.4940S ribosomal protein S27a OS=Solanum tuberosum GN... [more]
RS27A_SOLLC4.531e-2896.4940S ribosomal protein S27a OS=Solanum lycopersicum... [more]
RS27A_LUPAL9.448e-2696.3040S ribosomal protein S27a OS=Lupinus albus PE=3 S... [more]
R27AB_ARATH6.124e-2592.7340S ribosomal protein S27a-2 OS=Arabidopsis thalia... [more]
R27AC_ARATH7.998e-2590.9140S ribosomal protein S27a-3 OS=Arabidopsis thalia... [more]
RS27A_ASPOF3.969e-2494.3440S ribosomal protein S27a OS=Asparagus officinali... [more]
RS27A_HORVU9.777e-2391.0740S ribosomal protein S27a OS=Hordeum vulgare GN=M... [more]
UBL1_ORYSJ3.715e-2294.55Ubiquitin-like protein 1 OS=Oryza sativa subsp. ja... [more]
UBIQ_TRYCR3.715e-2296.36Ubiquitin OS=Trypanosoma cruzi PE=3 SV=1[more]
UBIQ_CHLRE3.715e-2296.36Ubiquitin OS=Chlamydomonas reinhardtii GN=UBI1 PE=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_01M02_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01M02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832367 ID=CF832367; Name=CF832367; organism=Citrus sinensis; type=EST; length=618bp
GAAATTTGCTGCGTTTCTCCTCATCTGCAGCCATGCAGATCATCTTGAAA
ACCCTAACGGGAAAGACCATAACCCTAGAGGTCGAATCATCGGACACCAT
CTACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGGATTCCACCGGACC
AGCAGCGTCTCATCTTCGCCGGAAAGCAGCTCTAGGACGGCAGAACCCTA
GCCGACTACAACATCCAAAAGGAGTCAACACTCCACCTCGTCCTCCGTCT
CCGTGGTGGCGCGAAGAAGCGTAAGAAGAACACCTACACCAAGCCGAAAA
AAATCAAGCACGAGAAGAAGAAGGTCAAGCTCGCCGTCTTGCAGTTTTAC
AAGGTCGATGATTCTGGAAAGGTCCAAAGGCTGAGGAAGGAGTGTCCGAA
TGCTGAGTGTGGAGCCGGCACCTTCATGGCTAACCACTTTGACAGGCACT
ACTGCGGCAAGTGTGGACTCACCTATGTTTACCAGAAGGCTGGCGGTGAT
TGATCGAGATTAAGTGGTTGTTTTGCTATTTTTAATTAATATTAATTACT
ATGGTTGTTGTGGTTCAAAAATTATGACTCTTTCGTAATTTTGTTTGACT
ATATACTTGTTTGCTTGA
back to top