CF832371

Overview
NameCF832371
Unique NameCF832371
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length694
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1011 contig Csv1_Contig1011:1045..1738. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCB_ORYSJ (Succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial OS=Oryza sativa subsp. japonica GN=Os02g0621700 PE=1 SV=1)

HSP 1 Score: 261.922 bits (668), Expect = 2.298e-69
Identity = 135/141 (95.74%), Postives = 138/141 (97.87%), Query Frame = -2
Query:  268 TQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 690
            TQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGG+ASEGQVVEAFKILTSD++V AILVNIFGGIMKCDVIASGIVNAAKQV LKVPVVVRLEGTNVDQG RILKESGMTLITAEDLDD
Sbjct:  271 TQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGSASEGQVVEAFKILTSDDRVKAILVNIFGGIMKCDVIASGIVNAAKQVDLKVPVVVRLEGTNVDQGKRILKESGMTLITAEDLDD 411          
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCB_ARATH (Succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial OS=Arabidopsis thaliana GN=At2g20420 PE=1 SV=1)

HSP 1 Score: 259.225 bits (661), Expect = 1.489e-68
Identity = 133/142 (93.66%), Postives = 137/142 (96.48%), Query Frame = -2
Query:  268 PTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 693
            PTQEDPREVAAAK DLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASE QVVEAFKILTSD+KV AILVNIFGGIMKCDVIASGIVNAAK+VALKVPVVVRLEGTNV+QG RILKESGM LITA+DLDD
Sbjct:  269 PTQEDPREVAAAKVDLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEHQVVEAFKILTSDDKVKAILVNIFGGIMKCDVIASGIVNAAKEVALKVPVVVRLEGTNVEQGKRILKESGMKLITADDLDD 410          
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCB2_DICDI (Succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial OS=Dictyostelium discoideum GN=scsB PE=3 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 1.767e-53
Identity = 105/140 (75.00%), Postives = 119/140 (85.00%), Query Frame = -2
Query:  268 QEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 687
            +EDPREV A K  LNYIGLDG IGCMVNGAGLAMATMDIIKL GG PANFLDVGG+ASE  V EAFKILT D +V  +LVNIFGGIMKCD+IASGIVNA+KQV LK+P+VVRLEGTNV+ G  IL++SG+ + +A DLDD
Sbjct:  270 EEDPREVEAGKFGLNYIGLDGNIGCMVNGAGLAMATMDIIKLKGGIPANFLDVGGSASEQAVTEAFKILTKDPRVKCLLVNIFGGIMKCDIIASGIVNASKQVGLKIPLVVRLEGTNVNIGKEILEKSGLNITSASDLDD 409          
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCB1_BOVIN (Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial OS=Bos taurus GN=SUCLA2 PE=2 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 9.698e-52
Identity = 97/141 (68.79%), Postives = 119/141 (84.40%), Query Frame = -2
Query:  268 TQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 690
            TQED R+  AAKADLNYIGLDG IGC+VNGAGLAMATMDIIKLHGGTPANFLDVGG A+  QV EAFK++TSD+KV++ILVNIFGGIM+CDVIA GIV A K + +K+P+VVRL+GT VD    ++ +SG+ ++  +DLD+
Sbjct:  295 TQEDERDKDAAKADLNYIGLDGNIGCLVNGAGLAMATMDIIKLHGGTPANFLDVGGGATVHQVTEAFKLITSDKKVLSILVNIFGGIMRCDVIAQGIVMAVKDLEIKIPIVVRLQGTRVDDAKALIADSGLKILACDDLDE 435          
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_AKKM8 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Akkermansia muciniphila (strain ATCC BAA-835) GN=sucC PE=3 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 1.267e-51
Identity = 100/141 (70.92%), Postives = 120/141 (85.11%), Query Frame = -2
Query:  268 TQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 690
            T+EDPREV A K DLNYIGLDG IGCMVNGAGLAMATMDIIK +GG PANFLDVGG+A+E  V  AF+ILTSD+ V A+LVNIFGGIM+CDVIA GIV AAK + +K+P+VVRLEGTNV+ G +IL +SG+ +I A++LD+
Sbjct:  243 TEEDPREVEAGKYDLNYIGLDGNIGCMVNGAGLAMATMDIIKYYGGEPANFLDVGGSATEEMVTNAFRILTSDKNVKALLVNIFGGIMRCDVIAQGIVAAAKNIDMKIPLVVRLEGTNVEIGKKILADSGIAIIPADNLDE 383          
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCB1_HUMAN (Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial OS=Homo sapiens GN=SUCLA2 PE=1 SV=3)

HSP 1 Score: 202.986 bits (515), Expect = 1.267e-51
Identity = 98/141 (69.50%), Postives = 119/141 (84.40%), Query Frame = -2
Query:  268 TQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 690
            TQED R+  AAKA+LNYIGLDG IGC+VNGAGLAMATMDIIKLHGGTPANFLDVGG A+  QV EAFK++TSD+KV+AILVNIFGGIM+CDVIA GIV A K + +K+PVVVRL+GT VD    ++ +SG+ ++  +DLD+
Sbjct:  295 TQEDERDKDAAKANLNYIGLDGNIGCLVNGAGLAMATMDIIKLHGGTPANFLDVGGGATVHQVTEAFKLITSDKKVLAILVNIFGGIMRCDVIAQGIVMAVKDLEIKIPVVVRLQGTRVDDAKALIADSGLKILACDDLDE 435          
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCB1_PIG (Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial (Fragment) OS=Sus scrofa GN=SUCLA2 PE=2 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 2.822e-51
Identity = 97/141 (68.79%), Postives = 119/141 (84.40%), Query Frame = -2
Query:  268 TQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 690
            TQED R+  AAKA+LNYIGLDG IGC+VNGAGLAMATMDIIKLHGGTPANFLDVGG A+  QV EAFK++TSD+KV++ILVNIFGGIM+CDVIA GIV A K + +K+PVVVRL+GT VD    ++ +SG+ ++  +DLD+
Sbjct:  257 TQEDERDKDAAKANLNYIGLDGNIGCLVNGAGLAMATMDIIKLHGGTPANFLDVGGGATVHQVTEAFKLITSDKKVLSILVNIFGGIMRCDVIAQGIVMAVKDLEIKIPVVVRLQGTRVDDAKALIADSGLKILACDDLDE 397          
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_PARDP (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Paracoccus denitrificans (strain Pd 1222) GN=sucC PE=3 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 4.813e-51
Identity = 99/141 (70.21%), Postives = 119/141 (84.40%), Query Frame = -2
Query:  268 TQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 690
            T+EDP+E+AA+K DLNYI LDGEIGCMVNGAGLAMATMDIIKL G  PANFLDVGG A++ +V EAFKI+TSD  V  ILVNIFGGIM+CD+IA GI+ A K+V L+VP+VVRLEGTNV+ G +I+ ESG+ +I A+DL D
Sbjct:  246 TEEDPKELAASKFDLNYIALDGEIGCMVNGAGLAMATMDIIKLFGAEPANFLDVGGGATKEKVTEAFKIITSDPNVKGILVNIFGGIMRCDIIAEGIIAAVKEVGLQVPLVVRLEGTNVELGKQIIGESGLNVIAADDLSD 386          
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_BRUSU (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Brucella suis GN=sucC PE=3 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.400e-50
Identity = 97/141 (68.79%), Postives = 118/141 (83.69%), Query Frame = -2
Query:  268 TQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 690
            T+EDP+E+ A+K DL Y+ LDG IGCMVNGAGLAMATMDIIKL+G  PANFLDVGG AS+ +V  AFKI+T+D  V  ILVNIFGGIMKCDVIA G++ A K+V LKVP+VVRLEGTNV+ G +I+ ESG+ +I+A+DLDD
Sbjct:  246 TEEDPKEIEASKYDLAYVALDGNIGCMVNGAGLAMATMDIIKLYGAEPANFLDVGGGASKEKVTAAFKIITADPAVEGILVNIFGGIMKCDVIAEGVIAAVKEVGLKVPLVVRLEGTNVELGKKIINESGLNVISADDLDD 386          
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_BRUSI (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=sucC PE=3 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.400e-50
Identity = 97/141 (68.79%), Postives = 118/141 (83.69%), Query Frame = -2
Query:  268 TQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 690
            T+EDP+E+ A+K DL Y+ LDG IGCMVNGAGLAMATMDIIKL+G  PANFLDVGG AS+ +V  AFKI+T+D  V  ILVNIFGGIMKCDVIA G++ A K+V LKVP+VVRLEGTNV+ G +I+ ESG+ +I+A+DLDD
Sbjct:  246 TEEDPKEIEASKYDLAYVALDGNIGCMVNGAGLAMATMDIIKLYGAEPANFLDVGGGASKEKVTAAFKIITADPAVEGILVNIFGGIMKCDVIAEGVIAAVKEVGLKVPLVVRLEGTNVELGKKIINESGLNVISADDLDD 386          
The following BLAST results are available for this feature:
BLAST of CF832371 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SUCB_ORYSJ2.298e-6995.74Succinyl-CoA ligase [GDP-forming] subunit beta, mi... [more]
SUCB_ARATH1.489e-6893.66Succinyl-CoA ligase [GDP-forming] subunit beta, mi... [more]
SUCB2_DICDI1.767e-5375.00Succinyl-CoA ligase [GDP-forming] subunit beta, mi... [more]
SUCB1_BOVIN9.698e-5268.79Succinyl-CoA ligase [ADP-forming] subunit beta, mi... [more]
SUCC_AKKM81.267e-5170.92Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCB1_HUMAN1.267e-5169.50Succinyl-CoA ligase [ADP-forming] subunit beta, mi... [more]
SUCB1_PIG2.822e-5168.79Succinyl-CoA ligase [ADP-forming] subunit beta, mi... [more]
SUCC_PARDP4.813e-5170.21Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_BRUSU1.400e-5068.79Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_BRUSI1.400e-5068.79Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01M04_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01M04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832371 ID=CF832371; Name=CF832371; organism=Citrus sinensis; type=EST; length=694bp
TTTTTTTTACCACATAATTTAATTGAGGTGTCATAAATTTATAATACTCT
ATGAAACACCGCAATAATCAGAGCCATGAAACGTCAAATCTTGAAAGACA
ATTGAAGAATGTTTCCTCATTCCTGCTTTTTATCAACAGCAAAGATTCAA
TGCACTCAATTTTACCAAAATTCTTTAAAATTCTGAAGCTTGTGAAGAAT
GGGAGCAGTACACTTGTATATTTGATTTTTTTCAACTGGCTATAGCTTTA
ACTGCTTTCTCAGCAGCATCATCAAGATCTTCTGCTGTTATTAGAGTCAT
ACCACTTTCCTTAAGTATTCTCTATCCCTGGTCAACATTGGTGCCTTCAA
GACGAACCACCACTGGTACTTTGAGTGCAACTTGTTTAGCAGCATTGACA
ATTCCACTGGCTATTACATCACATTTCATGATTCCTCCAAATATGTTCAC
CAAGATTGCTATGACTTTCTCATCAGAAGTCAAAATTTTAAATGCCTCAA
CCACCTGGCCCTCAGAAGCATTACCACCAACATCCAGGAAATTGGCAGGA
GTTCCACCATGTAATTTGATTATATCCATTGTAGCCATAGCTAATCCTGC
ACCATTCACCATGCAACCAATTTCTCCATCCAAGCCAATGTAATTTAAAT
CAGCTTTGGCAGCAGCCACCTCTCGAGGATCCTCTTGCGTTGGG
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