CF832426

Overview
NameCF832426
Unique NameCF832426
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length408
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5602 contig Csv1_Contig5602:181..587. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF832426 vs. ExPASy Swiss-Prot
Match: YB83_SCHPO (LisH domain-containing protein C29A3.03c OS=Schizosaccharomyces pombe GN=SPBC29A3.03c PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.183e-13
Identity = 28/54 (51.85%), Postives = 44/54 (81.48%), Query Frame = -2 
Query:  246 KEQTSDDNPPMIMSCGHVLCRQSINKMSKNHSRTFKCPYCPSDIDAAQCRQLYF 407
            KEQ +++NPPM+MSCGHV+ ++S+ ++S+N S+ FKCPYCP++  AA   ++YF
Sbjct:  345 KEQATEENPPMMMSCGHVIVKESLRQLSRNGSQRFKCPYCPNENVAADAIRVYF 398
The following BLAST results are available for this feature:
BLAST of CF832426 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
YB83_SCHPO6.183e-1351.85LisH domain-containing protein C29A3.03c OS=Schizo... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_01N14_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01N14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832426 ID=CF832426; Name=CF832426; organism=Citrus sinensis; type=EST; length=408bp
TTTTTTTTTTTTTTGATAGCATGCGGAAAGAATTTCTATTTACAACAAAT
GTATCATTTAACAGTGATACAACAGACCAGCTTTTTTGCAGCCACCAGCA
TCATACGCTACCCCTGGCTACATAAGACAACACAATACAAAATAACACAA
CATCAGATTCTTCTAAACCTAAAAAAGTTTGTTCAGACAAGAAAGGCAAG
TGTTAAATACAACCCATTGTACATATCAAGGCATGGCATGCATCAAAAAT
ACAGCTGCCGACACTGTGCTGCATCAATATCAGATGGACAGTATGGGCAC
TTGAATGTCCTTGAGTGGTTCTTTGACATTTTGTTAATTGACTGCCGGCA
GAGCACATGGCCGCAGGACATGATCATTGGAGGGTTATCGTCAGACGTTT
GCTCTTTT
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