CF832439

Overview
NameCF832439
Unique NameCF832439
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length430
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6745 contig Csv1_Contig6745:1971..2398. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF832439 vs. ExPASy Swiss-Prot
Match: ALF_ORYSJ (Fructose-bisphosphate aldolase cytoplasmic isozyme OS=Oryza sativa subsp. japonica GN=FBA PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 2.953e-13
Identity = 34/53 (64.15%), Postives = 40/53 (75.47%), Query Frame = -1 
Query:  272 KPWAGKEENVQKPQAAFLVRCKPNFEAPLGTSKGDPQLGEGPADFLHVKDSKY 430
            K W+GK EN++K +AAFL RCK N EA LGT KGD  LGEG ++ LHVKD KY
Sbjct:  306 KAWSGKAENIEKARAAFLTRCKANSEATLGTYKGDAVLGEGASESLHVKDYKY 358
[Close]
BLAST of CF832439 vs. ExPASy Swiss-Prot
Match: ALF_CICAR (Fructose-bisphosphate aldolase, cytoplasmic isozyme OS=Cicer arietinum GN=ALDC PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.241e-11
Identity = 33/53 (62.26%), Postives = 38/53 (71.70%), Query Frame = -1 
Query:  272 KPWAGKEENVQKPQAAFLVRCKPNFEAPLGTSKGDPQLGEGPADFLHVKDSKY 430
            K W+GKEENV+  Q A L R K N EA LGT KG+ QLGEG ++ LHVKD KY
Sbjct:  307 KAWSGKEENVKNAQDALLTRAKANSEATLGTYKGNSQLGEGASESLHVKDYKY 359
The following BLAST results are available for this feature:
BLAST of CF832439 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
ALF_ORYSJ2.953e-1364.15Fructose-bisphosphate aldolase cytoplasmic isozyme... [more]
ALF_CICAR1.241e-1162.26Fructose-bisphosphate aldolase, cytoplasmic isozym... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_01N21_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01N21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832439 ID=CF832439; Name=CF832439; organism=Citrus sinensis; type=EST; length=430bp
TTTTTTTTTTTTTTTTTGGGAAAAATCCCCTAAATTTAGTGGCCTTAGGG
GAAAGGGAAAAAAAAGAAAAACCAAAACCAAAGCCTAAACAGGTTTCAGT
TTAGTTTTGATCAAAACCACTCAAACCGAAGTTCCCAAGCTTTTTATTGG
TCCCCCTAAATATGAAAAAGCTCTAAAACTATGAATGAGAATGGGGCAAC
CTAATGGTCATACCGCCATTTACTCTCATAAAGTTCATAAAGCACAACAC
CCAAAGCTTCAACTGGGGTTAGTATTTGGAGTCCTTGACATGGAGAAAAT
CTGCGGGACCTTCACCAAGCTGGGGATCACCCTTGGAAGTACCGAGGGGA
GCCTCAAAGTTGGGCTTGCACCTGACAAGGAAAGCAGCCTGGGGCTTCTG
CACATTCTCTTCCTTTCCAGCCCATGGCTT
back to top