CF832466

Overview
NameCF832466
Unique NameCF832466
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length765
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2932 contig Csv1_Contig2932:262..1026. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832466 vs. ExPASy Swiss-Prot
Match: MYB4_ORYSJ (Myb-related protein Myb4 OS=Oryza sativa subsp. japonica GN=MYB4 PE=2 SV=2)

HSP 1 Score: 228.024 bits (580), Expect = 4.344e-59
Identity = 123/245 (50.20%), Postives = 147/245 (60.00%), Query Frame = 3
Query:   69 MVRAPCCEKMGLKKGPWTPEEDQILINYIQLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTHXXXXXXXXXXXEPVINNHSNAN----HVTARS----------------EICSGAXXXXXXXXXXXXXXXXXXXXXAANNACVKTEPSSSENNHDSLVEIDENFWTEVLSAENSGISIE-DSNDRFSAVGGADPL 740
            M RAPCCEKMGLKKGPWTPEED++L+ +IQ +GHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNF++EEEDTII+LHE+LGNRWSAIAARLPGRTDNEIKNVWHTH            P    H  A+    H   +S                   S +                     A+ + C K E S +  + +   +ID++FW+E LS    G  +  +  D F A   AD +
Sbjct:    1 MGRAPCCEKMGLKKGPWTPEEDKVLVAHIQRHGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFSKEEEDTIIHLHELLGNRWSAIAARLPGRTDNEIKNVWHTH-----LKKRLDAPAQGGHVAASGGKKHKKPKSAKKPAAAAAAPPASPERSASSSVTESSMASSVAEEHGNAGISSASASVCAKEESSFTSASEE--FQIDDSFWSETLSMPLDGYDVSMEPGDAFVAPPSADDM 238          
BLAST of CF832466 vs. ExPASy Swiss-Prot
Match: MYB1_MAIZE (Myb-related protein Zm1 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.549e-48
Identity = 86/109 (78.90%), Postives = 95/109 (87.16%), Query Frame = 3
Query:   75 RAPCCEKMGLKKGPWTPEEDQILINYIQLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTH 401
            RAPCC K+GL +G WTP+ED  LI YIQ +GH NWRALPKQAGLLRCGKSCRLRWINYLRPD+KRGNFT EEE+ II LH +LGN+WS IAA LPGRTDNEIKNVW+TH
Sbjct:    5 RAPCCAKVGLNRGSWTPQEDMRLIAYIQKHGHTNWRALPKQAGLLRCGKSCRLRWINYLRPDLKRGNFTDEEEEAIIRLHGLLGNKWSKIAACLPGRTDNEIKNVWNTH 113          
BLAST of CF832466 vs. ExPASy Swiss-Prot
Match: MYB5_ARATH (Transcription repressor MYB5 OS=Arabidopsis thaliana GN=MYB5 PE=1 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 2.472e-46
Identity = 86/152 (56.58%), Postives = 107/152 (70.39%), Query Frame = 3
Query:   54 CGGPKMVR---APCCEKMGLKKGPWTPEEDQILINYIQLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTHXXXXXXXXXXXEPVINNHSNANHVTARSEICSG 500
            CGG K V     PCC KMG+K+GPWT EED+IL+++I+  G G WR+LPK+AGLLRCGKSCRLRW+NYLRP +KRG  T +EED I+ LH +LGNRWS IA R+PGRTDNEIKN W+TH           +P  +   +AN++    E  SG
Sbjct:    4 CGGKKPVSKKTTPCCTKMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTH-LRKKLLRQGIDPQTHKPLDANNIHKPEEEVSG 154          
BLAST of CF832466 vs. ExPASy Swiss-Prot
Match: MYBP_MAIZE (Myb-related protein P OS=Zea mays GN=P PE=2 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 5.508e-46
Identity = 81/111 (72.97%), Postives = 93/111 (83.78%), Query Frame = 3
Query:   69 MVRAPCCEKMGLKKGPWTPEEDQILINYIQLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTH 401
            M R PCCEK+GLK+G WT EEDQ+L NYI  +G G+WR+LPK AGLLRCGKSCRLRWINYLR D+KRGN ++EEED II LH  LGNRWS IA+ LPGRTDNEIKN W++H
Sbjct:    1 MGRTPCCEKVGLKRGRWTAEEDQLLANYIAEHGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADVKRGNISKEEEDIIIKLHATLGNRWSLIASHLPGRTDNEIKNYWNSH 111          
BLAST of CF832466 vs. ExPASy Swiss-Prot
Match: MYB30_ANTMA (Myb-related protein 330 OS=Antirrhinum majus GN=MYB330 PE=2 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 2.093e-45
Identity = 81/111 (72.97%), Postives = 91/111 (81.98%), Query Frame = 3
Query:   69 MVRAPCCEKMGLKKGPWTPEEDQILINYIQLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTH 401
            M R+PCCEK    KG WT EEDQ LINYI+ +G G WR+LPK AGLLRCGKSCRLRWINYLRPD+KRGNFT EE++ II LH +LGN+WS IA  LPGRTDNEIKN W+TH
Sbjct:    1 MGRSPCCEKAHTNKGAWTKEEDQRLINYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDEIIIKLHSLLGNKWSLIAGALPGRTDNEIKNYWNTH 111          
BLAST of CF832466 vs. ExPASy Swiss-Prot
Match: MYB12_ARATH (Transcription factor MYB12 OS=Arabidopsis thaliana GN=MYB12 PE=2 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 3.570e-45
Identity = 80/111 (72.07%), Postives = 91/111 (81.98%), Query Frame = 3
Query:   69 MVRAPCCEKMGLKKGPWTPEEDQILINYIQLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTH 401
            M RAPCCEK+G+K+G WT EEDQIL NYIQ  G G+WR+LPK AGL RCGKSCRLRWINYLR D+KRGN T EEE+ ++ LH  LGNRWS IA  LPGRTDNEIKN W++H
Sbjct:    1 MGRAPCCEKVGIKRGRWTAEEDQILSNYIQSNGEGSWRSLPKNAGLKRCGKSCRLRWINYLRSDLKRGNITPEEEELVVKLHSTLGNRWSLIAGHLPGRTDNEIKNYWNSH 111          
BLAST of CF832466 vs. ExPASy Swiss-Prot
Match: MYB3_ARATH (Transcription factor MYB3 OS=Arabidopsis thaliana GN=MYB3 PE=1 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 7.953e-45
Identity = 77/111 (69.37%), Postives = 93/111 (83.78%), Query Frame = 3
Query:   69 MVRAPCCEKMGLKKGPWTPEEDQILINYIQLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTH 401
            M R+PCCEK  + KG WT EEDQ+L++YI+ +G G WR+LP+ AGL RCGKSCRLRW+NYLRPD+KRGNFT EE++ II LH +LGN+WS IA RLPGRTDNEIKN W+TH
Sbjct:    1 MGRSPCCEKAHMNKGAWTKEEDQLLVDYIRKHGEGCWRSLPRAAGLQRCGKSCRLRWMNYLRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTH 111          
BLAST of CF832466 vs. ExPASy Swiss-Prot
Match: MYB4_ARATH (Transcription repressor MYB4 OS=Arabidopsis thaliana GN=MYB4 PE=1 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 1.039e-44
Identity = 79/111 (71.17%), Postives = 91/111 (81.98%), Query Frame = 3
Query:   69 MVRAPCCEKMGLKKGPWTPEEDQILINYIQLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTH 401
            M R+PCCEK    KG WT EED+ L+ YI+ +G G WR+LPK AGLLRCGKSCRLRWINYLRPD+KRGNFT EE++ II LH +LGN+WS IA RLPGRTDNEIKN W+TH
Sbjct:    1 MGRSPCCEKAHTNKGAWTKEEDERLVAYIKAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTH 111          
BLAST of CF832466 vs. ExPASy Swiss-Prot
Match: MYB38_MAIZE (Myb-related protein Zm38 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 1.039e-44
Identity = 78/111 (70.27%), Postives = 92/111 (82.88%), Query Frame = 3
Query:   69 MVRAPCCEKMGLKKGPWTPEEDQILINYIQLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTH 401
            M R+PCCEK    +G WT EED+ L+ YI+ +G G WR+LPK AGLLRCGKSCRLRWINYLRPD+KRGNFT +E+D I+ LH +LGN+WS IAARLPGRTDNEIKN W+TH
Sbjct:    1 MGRSPCCEKAHTNRGAWTKEEDERLVAYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTADEDDLIVKLHSLLGNKWSLIAARLPGRTDNEIKNYWNTH 111          
BLAST of CF832466 vs. ExPASy Swiss-Prot
Match: MYB6_ARATH (Transcription repressor MYB6 OS=Arabidopsis thaliana GN=MYB6 PE=1 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.772e-44
Identity = 79/111 (71.17%), Postives = 91/111 (81.98%), Query Frame = 3
Query:   69 MVRAPCCEKMGLKKGPWTPEEDQILINYIQLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTH 401
            M R+PCCEK    KG WT EEDQ L++YI+ +G G WR+LPK AGLLRCGKSCRLRWINYLRPD+KRGNFT +E+  II LH +LGN+WS IA RLPGRTDNEIKN W+TH
Sbjct:    1 MGRSPCCEKAHTNKGAWTKEEDQRLVDYIRNHGEGCWRSLPKSAGLLRCGKSCRLRWINYLRPDLKRGNFTDDEDQIIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTH 111          
The following BLAST results are available for this feature:
BLAST of CF832466 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
MYB4_ORYSJ4.344e-5950.20Myb-related protein Myb4 OS=Oryza sativa subsp. ja... [more]
MYB1_MAIZE1.549e-4878.90Myb-related protein Zm1 OS=Zea mays PE=2 SV=1[more]
MYB5_ARATH2.472e-4656.58Transcription repressor MYB5 OS=Arabidopsis thalia... [more]
MYBP_MAIZE5.508e-4672.97Myb-related protein P OS=Zea mays GN=P PE=2 SV=1[more]
MYB30_ANTMA2.093e-4572.97Myb-related protein 330 OS=Antirrhinum majus GN=MY... [more]
MYB12_ARATH3.570e-4572.07Transcription factor MYB12 OS=Arabidopsis thaliana... [more]
MYB3_ARATH7.953e-4569.37Transcription factor MYB3 OS=Arabidopsis thaliana ... [more]
MYB4_ARATH1.039e-4471.17Transcription repressor MYB4 OS=Arabidopsis thalia... [more]
MYB38_MAIZE1.039e-4470.27Myb-related protein Zm38 OS=Zea mays PE=2 SV=1[more]
MYB6_ARATH1.772e-4471.17Transcription repressor MYB6 OS=Arabidopsis thalia... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01O11_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01O11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832466 ID=CF832466; Name=CF832466; organism=Citrus sinensis; type=EST; length=765bp
CAAAAAATTTGATCTTAGAGAATTAAAAAGATACATAGCAAAGTTAAATA
TACTGCGGTGGTCCGAAAATGGTGAGAGCTCCATGCTGCGAGAAGATGGG
ATTGAAGAAAGGTCCATGGACTCCTGAAGAAGATCAAATTTTAATCAATT
ACATTCAACTTTATGGCCATGGCAACTGGCGGGCACTTCCCAAACAAGCA
GGTTTATTAAGATGTGGAAAGAGTTGCCGGCTCCGGTGGATAAATTACTT
GCGGCCGGATATTAAACGGGGAAATTTCACCAGAGAAGAAGAGGACACTA
TCATCAACCTACATGAAATGCTCGGAAATAGATGGTCAGCAATCGCAGCA
AGACTTCCGGGAAGAACGGACAACGAAATTAAAAATGTTTGGCACACTCA
CTTGAAAAAGCGTCTCAAGCAAAAGCAACAACAAGAGCCCGTGATTAATA
ATCATAGTAACGCTAATCATGTTACGGCGAGATCCGAGATCTGCAGCGGC
GCCAGTACTCCCGATCGGCAAGACTCGACTACTACTTCAAGCGACATGTC
GTCCGTCACCTCCTCCGCGGCTAATAACGCTTGCGTGAAAACAGAGCCGT
CGTCGTCCGAAAACAATCACGACAGCTTGGTTGAAATAGATGAGAATTTT
TGGACGGAAGTGTTGTCGGCTGAGAACTCGGGCATTAGTATTGAGGACAG
CAATGATCGTTTTTCAGCGGTTGGAGGCGCCGACCCACTGTCTATAGTTG
AATTTTCATCATCAC
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