CF832470

Overview
NameCF832470
Unique NameCF832470
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length619
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1053 contig Csv1_Contig1053:329..948. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832470 vs. ExPASy Swiss-Prot
Match: BT3L4_XENTR (Transcription factor BTF3 homolog 4 OS=Xenopus tropicalis GN=btf3l4 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.158e-15
Identity = 39/78 (50.00%), Postives = 59/78 (75.64%), Query Frame = 3
Query:    6 FLNLKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQKQAPNAGTGAPTTQEDDDDEVPELV 239
            F N KVQAS++ANT+ ++G  + K++ ++LPGI++QLG D+L +LRKLAEQF +Q  ++    P   E++DD+VPELV
Sbjct:   69 FNNPKVQASLSANTFAITGHAEVKQITEMLPGILSQLGADSLTSLRKLAEQFPRQVLDSKASKPEDIEEEDDDVPELV 146          
BLAST of CF832470 vs. ExPASy Swiss-Prot
Match: BT3L4_XENLA (Transcription factor BTF3 homolog 4 OS=Xenopus laevis GN=btf3l4 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.158e-15
Identity = 39/78 (50.00%), Postives = 59/78 (75.64%), Query Frame = 3
Query:    6 FLNLKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQKQAPNAGTGAPTTQEDDDDEVPELV 239
            F N KVQAS++ANT+ ++G  + K++ ++LPGI++QLG D+L +LRKLAEQF +Q  ++    P   E++DD+VPELV
Sbjct:   69 FNNPKVQASLSANTFAITGHAEVKQITEMLPGILSQLGADSLTSLRKLAEQFPRQVLDSKASKPEDIEEEDDDVPELV 146          
BLAST of CF832470 vs. ExPASy Swiss-Prot
Match: BTF3_MOUSE (Transcription factor BTF3 OS=Mus musculus GN=Btf3 PE=2 SV=3)

HSP 1 Score: 82.8037 bits (203), Expect = 1.512e-15
Identity = 43/78 (55.13%), Postives = 58/78 (74.36%), Query Frame = 3
Query:    6 FLNLKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQKQAPNAGTGAPTTQEDDDDEVPELV 239
            F N KVQAS+AANT+ ++G  +TK+L ++LP I+NQLG D+L +LR+LAE   KQ+ + G     T EDDDDEVP+LV
Sbjct:  116 FNNPKVQASLAANTFTITGHAETKQLTEMLPSILNQLGADSLTSLRRLAEALPKQSVD-GKAPLATGEDDDDEVPDLV 192          
BLAST of CF832470 vs. ExPASy Swiss-Prot
Match: BTF3_HUMAN (Transcription factor BTF3 OS=Homo sapiens GN=BTF3 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.512e-15
Identity = 43/78 (55.13%), Postives = 58/78 (74.36%), Query Frame = 3
Query:    6 FLNLKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQKQAPNAGTGAPTTQEDDDDEVPELV 239
            F N KVQAS+AANT+ ++G  +TK+L ++LP I+NQLG D+L +LR+LAE   KQ+ + G     T EDDDDEVP+LV
Sbjct:  118 FNNPKVQASLAANTFTITGHAETKQLTEMLPSILNQLGADSLTSLRRLAEALPKQSVD-GKAPLATGEDDDDEVPDLV 194          
BLAST of CF832470 vs. ExPASy Swiss-Prot
Match: BT3L4_BOVIN (Transcription factor BTF3 homolog 4 OS=Bos taurus GN=BTF3L4 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.280e-14
Identity = 37/78 (47.44%), Postives = 59/78 (75.64%), Query Frame = 3
Query:    6 FLNLKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQKQAPNAGTGAPTTQEDDDDEVPELV 239
            F N KVQAS++ANT+ ++G  + K + ++LPGI++QLG D+L +LRKLAEQF +Q  ++ T  P   ++++D+VP+LV
Sbjct:   69 FNNPKVQASLSANTFAITGHAEAKPITEMLPGILSQLGADSLTSLRKLAEQFPRQVLDSKTPKPEDIDEEEDDVPDLV 146          
BLAST of CF832470 vs. ExPASy Swiss-Prot
Match: BT3L4_PONAB (Transcription factor BTF3 homolog 4 OS=Pongo abelii GN=BTF3L4 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.672e-14
Identity = 37/78 (47.44%), Postives = 58/78 (74.36%), Query Frame = 3
Query:    6 FLNLKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQKQAPNAGTGAPTTQEDDDDEVPELV 239
            F N KVQAS++ANT+ ++G  + K + ++LPGI++QLG D+L +LRKLAEQF +Q  ++    P   +++DD+VP+LV
Sbjct:   69 FNNPKVQASLSANTFAITGHAEAKPITEMLPGILSQLGADSLTSLRKLAEQFPRQVLDSKAPKPEDIDEEDDDVPDLV 146          
BLAST of CF832470 vs. ExPASy Swiss-Prot
Match: BT3L4_MOUSE (Transcription factor BTF3 homolog 4 OS=Mus musculus GN=Btf3l4 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.672e-14
Identity = 37/78 (47.44%), Postives = 58/78 (74.36%), Query Frame = 3
Query:    6 FLNLKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQKQAPNAGTGAPTTQEDDDDEVPELV 239
            F N KVQAS++ANT+ ++G  + K + ++LPGI++QLG D+L +LRKLAEQF +Q  ++    P   +++DD+VP+LV
Sbjct:   69 FNNPKVQASLSANTFAITGHAEAKPITEMLPGILSQLGADSLTSLRKLAEQFPRQVLDSKAPKPEDIDEEDDDVPDLV 146          
BLAST of CF832470 vs. ExPASy Swiss-Prot
Match: BT3L4_HUMAN (Transcription factor BTF3 homolog 4 OS=Homo sapiens GN=BTF3L4 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.672e-14
Identity = 37/78 (47.44%), Postives = 58/78 (74.36%), Query Frame = 3
Query:    6 FLNLKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQKQAPNAGTGAPTTQEDDDDEVPELV 239
            F N KVQAS++ANT+ ++G  + K + ++LPGI++QLG D+L +LRKLAEQF +Q  ++    P   +++DD+VP+LV
Sbjct:   69 FNNPKVQASLSANTFAITGHAEAKPITEMLPGILSQLGADSLTSLRKLAEQFPRQVLDSKAPKPEDIDEEDDDVPDLV 146          
BLAST of CF832470 vs. ExPASy Swiss-Prot
Match: BT3L4_DANRE (Transcription factor BTF3 homolog 4 OS=Danio rerio GN=btf3l4 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.851e-14
Identity = 38/78 (48.72%), Postives = 58/78 (74.36%), Query Frame = 3
Query:    6 FLNLKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQKQAPNAGTGAPTTQEDDDDEVPELV 239
            F N KVQAS++ANT+ ++G  +TK+L ++LPGI++QLG D+L +LRKLAEQF +Q  +         +++DD+VP+LV
Sbjct:   69 FNNPKVQASLSANTFAITGHAETKQLTEMLPGILSQLGADSLTSLRKLAEQFPRQVLDNKAPKAEDIDEEDDDVPDLV 146          
BLAST of CF832470 vs. ExPASy Swiss-Prot
Match: NACB_AJECN (Nascent polypeptide-associated complex subunit beta OS=Ajellomyces capsulata (strain NAm1 / WU24) GN=EGD1 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 8.296e-14
Identity = 37/75 (49.33%), Postives = 53/75 (70.67%), Query Frame = 3
Query:   18 KVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQK-QAPNAGTGAPTTQEDDDDEVPELV 239
            KV AS+ +NT+ + G  + K+L +++PGI+NQLGPD+L +LRKLAE +Q  Q    G  A    +DDDDE+P+LV
Sbjct:   74 KVHASVPSNTFAIYGNGEDKELTELVPGILNQLGPDSLASLRKLAESYQSMQKGEGGEDAKKDDDDDDDEIPDLV 148          
The following BLAST results are available for this feature:
BLAST of CF832470 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
BT3L4_XENTR1.158e-1550.00Transcription factor BTF3 homolog 4 OS=Xenopus tro... [more]
BT3L4_XENLA1.158e-1550.00Transcription factor BTF3 homolog 4 OS=Xenopus lae... [more]
BTF3_MOUSE1.512e-1555.13Transcription factor BTF3 OS=Mus musculus GN=Btf3 ... [more]
BTF3_HUMAN1.512e-1555.13Transcription factor BTF3 OS=Homo sapiens GN=BTF3 ... [more]
BT3L4_BOVIN1.280e-1447.44Transcription factor BTF3 homolog 4 OS=Bos taurus ... [more]
BT3L4_PONAB1.672e-1447.44Transcription factor BTF3 homolog 4 OS=Pongo abeli... [more]
BT3L4_MOUSE1.672e-1447.44Transcription factor BTF3 homolog 4 OS=Mus musculu... [more]
BT3L4_HUMAN1.672e-1447.44Transcription factor BTF3 homolog 4 OS=Homo sapien... [more]
BT3L4_DANRE2.851e-1448.72Transcription factor BTF3 homolog 4 OS=Danio rerio... [more]
NACB_AJECN8.296e-1449.33Nascent polypeptide-associated complex subunit bet... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01O13_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01O13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832470 ID=CF832470; Name=CF832470; organism=Citrus sinensis; type=EST; length=619bp
TTCAGTTCTTAAATCTCAAAGTACAAGCTTCAATTGCTGCCAACACATGG
GTAGTTAGTGGTGCCCCACAAACCAAGAAGTTGCAGGATATTCTCCCTGG
AATTATCAATCAATTGGGGCCAGATAATTTGGACAACCTGAGGAAGTTGG
CGGAGCAGTTTCAGAAGCAAGCACCTAATGCAGGAACTGGTGCACCCACG
ACTCAAGAGGACGACGACGATGAGGTCCCAGAGCTTGTGGCAGGCGAGAC
GTTTGAAGCTGCCGCAGAGGAGAAAACAGAGAAACCTGACGCTGCTTCTT
AGAGAGTTTTATCTAGAGGGACTTTGTGTTATTCTATATATTTTCTATGT
TTTTTGAGCTTTTATTTTACTTTTCCGAGTCAACTTTCTCTTGTTTTATC
TGATTCTCCCTGTGACACTAGATATTGTTACTTTTAATTCAATGTTTTGC
TCCAGTGAAACCAGTGAAAACCTTTTTACTCTTTCAGAATCTGGAGGCAC
TGTTGCAATGGCTTTCTATTGTGCATTTTGTTGTAAGTCTGATGTCGTCG
GATCGGTTGCTCTTCAATGAAACAGGCGGCTAAATATTTTGCCTGTATTT
CNNAAAAAAAAAAAAAAAA
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