CF832477

Overview
NameCF832477
Unique NameCF832477
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length865
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10752 contig Csv1_Contig10752:690..1554. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832477 vs. ExPASy Swiss-Prot
Match: HDA2_ARATH (Histone deacetylase 2 OS=Arabidopsis thaliana GN=HDA2 PE=1 SV=2)

HSP 1 Score: 251.521 bits (641), Expect = 4.444e-66
Identity = 122/149 (81.88%), Postives = 135/149 (90.60%), Query Frame = -3
Query:  417 IIDLDAHQGNGHEKDFSSDSRVYILDMFNPGIYPRDYEARRFIDQKVEVVSGTTTNEYLKKLDEALEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGGYMKSSARVIANSVENLSRKGLI 863
            IIDLDAHQGNGHE D   D+RVYILDM+NP IYP DY ARRFIDQKVEV+SGTTT+EYL+KLDEALEVA   F PELVIYNAGTDIL+GDPLG+LKISPDGI +RDEK FRFAR +NIP+VMLTSGGYMKSSARVIA+S+ENLSR+GLI
Sbjct:  234 IIDLDAHQGNGHETDLGDDNRVYILDMYNPEIYPFDYRARRFIDQKVEVMSGTTTDEYLRKLDEALEVASRNFQPELVIYNAGTDILDGDPLGLLKISPDGITSRDEKVFRFAREKNIPLVMLTSGGYMKSSARVIADSIENLSRQGLI 382          
BLAST of CF832477 vs. ExPASy Swiss-Prot
Match: HDA11_MACFA (Histone deacetylase 11 OS=Macaca fascicularis GN=HDAC11 PE=2 SV=2)

HSP 1 Score: 169.088 bits (427), Expect = 2.900e-41
Identity = 85/149 (57.05%), Postives = 109/149 (73.15%), Query Frame = -3
Query:  417 IIDLDAHQGNGHEKDFSSDSRVYILDMFNPGIYPRDYEARRFIDQKVEVVSGTTTNEYLKKLDEALEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGGYMKSSARVIANSVENLSRKGLI 863
            IIDLDAHQGNGHE+DF  D RVYI+D++N  IYP D  A++ I +KVE+  GT  +EYL K++  +E +     P++V+YNAGTDILEGD LG L ISP GI  RDE  FR  R R++PI+M+TSGGY K +AR+IA+S+ NL   GLI
Sbjct:  177 IIDLDAHQGNGHERDFMDDKRVYIMDVYNRHIYPGDRFAKQAIRRKVELEWGTEDDEYLDKVERNIEKSLQEHLPDVVVYNAGTDILEGDRLGGLSISPAGIVKRDELVFRMVRGRHVPILMVTSGGYQKRTARIIADSILNLFGLGLI 325          
BLAST of CF832477 vs. ExPASy Swiss-Prot
Match: HDA11_HUMAN (Histone deacetylase 11 OS=Homo sapiens GN=HDAC11 PE=1 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 1.102e-40
Identity = 84/149 (56.38%), Postives = 108/149 (72.48%), Query Frame = -3
Query:  417 IIDLDAHQGNGHEKDFSSDSRVYILDMFNPGIYPRDYEARRFIDQKVEVVSGTTTNEYLKKLDEALEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGGYMKSSARVIANSVENLSRKGLI 863
            IIDLDAHQGNGHE+DF  D RVYI+D++N  IYP D  A++ I +KVE+  GT  +EYL K++  ++ +     P++V+YNAGTDILEGD LG L ISP GI  RDE  FR  R R +PI+M+TSGGY K +AR+IA+S+ NL   GLI
Sbjct:  177 IIDLDAHQGNGHERDFMDDKRVYIMDVYNRHIYPGDRFAKQAIRRKVELEWGTEDDEYLDKVERNIKKSLQEHLPDVVVYNAGTDILEGDRLGGLSISPAGIVKRDELVFRMVRGRRVPILMVTSGGYQKRTARIIADSILNLFGLGLI 325          
BLAST of CF832477 vs. ExPASy Swiss-Prot
Match: HDA11_MOUSE (Histone deacetylase 11 OS=Mus musculus GN=Hdac11 PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 5.470e-40
Identity = 83/149 (55.70%), Postives = 107/149 (71.81%), Query Frame = -3
Query:  417 IIDLDAHQGNGHEKDFSSDSRVYILDMFNPGIYPRDYEARRFIDQKVEVVSGTTTNEYLKKLDEALEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGGYMKSSARVIANSVENLSRKGLI 863
            IIDLDAHQGNGHE+DF  D RVYI+D++N  IYP D  A+  I +KVE+  GT   EYL+K++  +  +     P++V+YNAGTD+LEGD LG L ISP GI  RDE  FR  R+ +IPI+M+TSGGY K +AR+IA+S+ NL   GLI
Sbjct:  177 IIDLDAHQGNGHERDFMGDKRVYIMDVYNRHIYPGDRFAKEAIRRKVELEWGTEDEEYLEKVERNVRRSLQEHLPDVVVYNAGTDVLEGDRLGGLSISPAGIVKRDEVVFRVVRAHDIPILMVTSGGYQKRTARIIADSILNLHDLGLI 325          
The following BLAST results are available for this feature:
BLAST of CF832477 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
HDA2_ARATH4.444e-6681.88Histone deacetylase 2 OS=Arabidopsis thaliana GN=H... [more]
HDA11_MACFA2.900e-4157.05Histone deacetylase 11 OS=Macaca fascicularis GN=H... [more]
HDA11_HUMAN1.102e-4056.38Histone deacetylase 11 OS=Homo sapiens GN=HDAC11 P... [more]
HDA11_MOUSE5.470e-4055.70Histone deacetylase 11 OS=Mus musculus GN=Hdac11 P... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_01O18_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01O18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832477 ID=CF832477; Name=CF832477; organism=Citrus sinensis; type=EST; length=865bp
TTTTTTTTTTTTTTTGTCCAAACCCCAACTGTAAGATGTTATCAACCACC
TCGACACTTAGGCTTCGAAAACCCAACTGCCACACATCACTCTCAAACGC
AACCTAAATAGCATTTGAAAACCATAAAATTTACAAAGACTCGTGAACTT
CAAAACTGATTCATGCATACACTAATACAATTACTTCTAGGCTTTCCTCT
CTGTGTGTGTATTTCATCGTTCTGCCTTCACACCATTTGTTTTAATCTTT
TGCTTCCTTAGATGCTTATATATACCCATAGCTACAATCACTGTGTAGTG
TAGAACATTTCAGATGTACATGAAAATAAACAAACGCATGCATCCATAAG
ACCCATGAAGCACAGTGAAGGGCACTTGAATTGCACTTATATCTTTACAG
GTGACCTCCCCATATTTATCAGGCCCTTTCTTGATAGGTTTTCAACTGAA
TTTGCTATAACTCTGGCGCTAGACTTCATGTAACCCCCTGATGTGAGCAT
AACAATGGGAATGTTCCTTGATCGAGCAAACCTGAAGGTCTTCTCATCTC
TAGCGGCTATCCCATCAGGACTAATCTTTAACATGCCCAGTGGATCTCCC
TCCAGGATATCAGTGCCGGCATTGTAAATCACCAGCTCAGGATCAAACGT
ATGACCAGCAACCTCAAGTGCTTCATCTAATTTCTTTAAGTACTCATTTG
TTGTTGTCCCACTCACTACTTCGACCTTCTGATCAATAAAACGTCTTGCC
TCATAGTCCCGAGGATAAATTCCAGGGTTAAACATATCCAGAATATAAAC
ACGACTGTCACTGGAAAAGTCCTTCTCGTGACCATTTCCTTGATGTGCAT
CAAGATCAATTATCA
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