CF832478

Overview
NameCF832478
Unique NameCF832478
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length753
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10752 contig Csv1_Contig10752:199..951. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832478 vs. ExPASy Swiss-Prot
Match: HDA2_ARATH (Histone deacetylase 2 OS=Arabidopsis thaliana GN=HDA2 PE=1 SV=2)

HSP 1 Score: 399.823 bits (1026), Expect = 8.103e-111
Identity = 192/244 (78.69%), Postives = 216/244 (88.52%), Query Frame = 2
Query:   20 LIYSPDYNISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKERGWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRVYILDMFNPGIYPRDYEARRFIDQKVEVVSGTTTNEYLKKLDEALEVAGHTFDPELVIYNAGTDI 751
            +IYS  Y+ISF+GIEKLHPFDSSKWGR+C+FL S+GFL++  IVEPLEASK DLLVVHSE+YL SL+SS  V+ I EV PVA FPN LVQ+KVLYPFRKQVGGTILAAKLA ERGWAIN+GGGFHHC+A+ GGGFCA+ADISLCIH+AF++L ISRVMIIDLDAHQGNGHE D   D+RVYILDM+NP IYP DY ARRFIDQKVEV+SGTTT+EYL+KLDEALEVA   F PELVIYNAGTDI
Sbjct:   76 IIYSSSYDISFMGIEKLHPFDSSKWGRVCKFLVSDGFLEEKAIVEPLEASKIDLLVVHSENYLNSLKSSATVARITEVAPVAFFPNFLVQQKVLYPFRKQVGGTILAAKLATERGWAINIGGGFHHCTAERGGGFCAFADISLCIHFAFLRLRISRVMIIDLDAHQGNGHETDLGDDNRVYILDMYNPEIYPFDYRARRFIDQKVEVMSGTTTDEYLRKLDEALEVASRNFQPELVIYNAGTDI 319          
BLAST of CF832478 vs. ExPASy Swiss-Prot
Match: HDA11_MACFA (Histone deacetylase 11 OS=Macaca fascicularis GN=HDAC11 PE=2 SV=2)

HSP 1 Score: 297.745 bits (761), Expect = 4.337e-80
Identity = 145/246 (58.94%), Postives = 182/246 (73.98%), Query Frame = 2
Query:   17 PLIYSPDYNISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKERGWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQL-NISRVMIIDLDAHQGNGHEKDFSSDSRVYILDMFNPGIYPRDYEARRFIDQKVEVVSGTTTNEYLKKLDEALEVAGHTFDPELVIYNAGTDI 751
            P++YSP YNI+F+G+EKLHPFD+ KWG++  FL  E  L  + +VE  EAS+EDLLVVH+  YL  L+ S  V+ I E+PPV   PN LVQRKVL P R Q GGTI+A KLA ERGWAINVGGGFHHCS+D GGGFCAYADI+L I + F ++  ISR  IIDLDAHQGNGHE+DF  D RVYI+D++N  IYP D  A++ I +KVE+  GT  +EYL K++  +E +     P++V+YNAGTDI
Sbjct:   17 PIVYSPRYNITFMGLEKLHPFDAGKWGKVINFLKEEKLLSDSMLVEAREASEEDLLVVHTRRYLNELKWSFAVATITEIPPVIFLPNFLVQRKVLRPLRTQTGGTIMAGKLAVERGWAINVGGGFHHCSSDRGGGFCAYADITLAIKFLFERVEGISRATIIDLDAHQGNGHERDFMDDKRVYIMDVYNRHIYPGDRFAKQAIRRKVELEWGTEDDEYLDKVERNIEKSLQEHLPDVVVYNAGTDI 262          
BLAST of CF832478 vs. ExPASy Swiss-Prot
Match: HDA11_HUMAN (Histone deacetylase 11 OS=Homo sapiens GN=HDAC11 PE=1 SV=1)

HSP 1 Score: 296.204 bits (757), Expect = 1.262e-79
Identity = 144/246 (58.54%), Postives = 182/246 (73.98%), Query Frame = 2
Query:   17 PLIYSPDYNISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKERGWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQL-NISRVMIIDLDAHQGNGHEKDFSSDSRVYILDMFNPGIYPRDYEARRFIDQKVEVVSGTTTNEYLKKLDEALEVAGHTFDPELVIYNAGTDI 751
            P++YSP YNI+F+G+EKLHPFD+ KWG++  FL  E  L  + +VE  EAS+EDLLVVH+  YL  L+ S  V+ I E+PPV   PN LVQRKVL P R Q GGTI+A KLA ERGWAINVGGGFHHCS+D GGGFCAYADI+L I + F ++  ISR  IIDLDAHQGNGHE+DF  D RVYI+D++N  IYP D  A++ I +KVE+  GT  +EYL K++  ++ +     P++V+YNAGTDI
Sbjct:   17 PIVYSPRYNITFMGLEKLHPFDAGKWGKVINFLKEEKLLSDSMLVEAREASEEDLLVVHTRRYLNELKWSFAVATITEIPPVIFLPNFLVQRKVLRPLRTQTGGTIMAGKLAVERGWAINVGGGFHHCSSDRGGGFCAYADITLAIKFLFERVEGISRATIIDLDAHQGNGHERDFMDDKRVYIMDVYNRHIYPGDRFAKQAIRRKVELEWGTEDDEYLDKVERNIKKSLQEHLPDVVVYNAGTDI 262          
BLAST of CF832478 vs. ExPASy Swiss-Prot
Match: HDA11_MOUSE (Histone deacetylase 11 OS=Mus musculus GN=Hdac11 PE=2 SV=1)

HSP 1 Score: 293.893 bits (751), Expect = 6.262e-79
Identity = 143/246 (58.13%), Postives = 179/246 (72.76%), Query Frame = 2
Query:   17 PLIYSPDYNISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKERGWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQL-NISRVMIIDLDAHQGNGHEKDFSSDSRVYILDMFNPGIYPRDYEARRFIDQKVEVVSGTTTNEYLKKLDEALEVAGHTFDPELVIYNAGTDI 751
            P++YSP YNI+F+G+EKLHPFD+ KWG++  FL  E  L    +VE  EAS+EDLLVVH+  YL  L+ S  V+ I E+PPV   PN LVQRKVL P R Q GGTI+A KLA ERGWAINVGGGFHHCS+D GGGFCAYADI+L I + F ++  ISR  IIDLDAHQGNGHE+DF  D RVYI+D++N  IYP D  A+  I +KVE+  GT   EYL+K++  +  +     P++V+YNAGTD+
Sbjct:   17 PIVYSPRYNITFMGLEKLHPFDAGKWGKVINFLKEEKLLSDGMLVEAREASEEDLLVVHTRRYLNELKWSFVVATITEIPPVIFLPNFLVQRKVLRPLRTQTGGTIMAGKLAVERGWAINVGGGFHHCSSDRGGGFCAYADITLAIKFLFERVEGISRATIIDLDAHQGNGHERDFMGDKRVYIMDVYNRHIYPGDRFAKEAIRRKVELEWGTEDEEYLEKVERNVRRSLQEHLPDVVVYNAGTDV 262          
BLAST of CF832478 vs. ExPASy Swiss-Prot
Match: Y1628_SYNP2 (Uncharacterized protein SYNPCC7002_A1628 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=SYNPCC7002_A1628 PE=3 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 2.767e-18
Identity = 73/247 (29.55%), Postives = 109/247 (44.13%), Query Frame = 2
Query:   17 PLIYSPDYNISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQS---SPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKERGWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRVYILDMFNPGIYPRDYEARRFIDQKVEVVSGTTTNEYLKKLDEALEVAGHTFDPELVIYNAGTD 748
            P++Y PDY      I + H F   K+  +   L  +G +    + +P    +  L +VH   Y+ +      +P     I +P  A     +VQR +       VGGTIL A+LA E G A N  GG HH     G GFC   D+++       +    R++I+DLD HQG+G    F  D  V+   M     +P     ++  D  + +  G   + YL+ L   LE       P+LV Y+AG D
Sbjct:    4 PVVYHPDY---VTPIPEEHRFPMPKFRLLHGLLLEDGVIQPEQVYQPQLPDRAWLELVHEPDYVTAYCQGTLTPKAQRRIGLPWSA----GVVQRTLT-----AVGGTILTAQLALEHGLACNTAGGTHHAFPGYGSGFCILNDLAIATRTIQQRGLAQRILIVDLDVHQGDGTAFIFQDDPTVFTFSMHCEVNFP---SQKQRSDLDLGLPEGLDDDGYLQILAHHLEDLLSQVKPDLVFYDAGVD 235          
BLAST of CF832478 vs. ExPASy Swiss-Prot
Match: HDAC8_XENTR (Histone deacetylase 8 OS=Xenopus tropicalis GN=hdac8 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.518e-16
Identity = 66/226 (29.20%), Postives = 104/226 (46.02%), Query Frame = 2
Query:  113 LSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQ--SSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAK---LAKERGWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRVYILDM--FNPGIYPRDYEAR-------RFIDQKVEVVSGTTTNEYLKKLDEALEVAGHTFDPELVIYNAGTD 748
            + + G L +  +V+P  AS E++   H++SYL+ L   S    +   E     L  +C +   + Y +   VGG  L A    +A +   AIN  GG+HH   DE  GFC   D  L I    ++    RV+ +D+D H G+G E  FS  S+V  + +  F+PG +P   +         R+    V +  G    +Y +  +  L+    TF+PE V+   G D
Sbjct:   37 IEAYGLLKEMRVVKPKVASMEEMAAFHTDSYLQHLHKVSEEGDNDDPETLEYGLGYDCPITEGI-YDYAAAVGGATLTAAEQLMAGKTRIAINWPGGWHHAKKDEASGFCYLNDAVLGI--LKLREKFDRVLYVDMDLHHGDGVEDAFSFTSKVMTVSLHKFSPGFFPGTGDVSDIGLGKGRYYSVNVPLQDGIQDEKYYQICEGVLKEVFTTFNPEAVVLQLGAD 259          
BLAST of CF832478 vs. ExPASy Swiss-Prot
Match: HDAC8_XENLA (Histone deacetylase 8 OS=Xenopus laevis GN=hdac8 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.332e-15
Identity = 62/215 (28.84%), Postives = 98/215 (45.58%), Query Frame = 2
Query:  146 IVEPLEASKEDLLVVHSESYLKSLQ--SSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKERGW---AINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRVYILDM--FNPGIYPRDYEAR-------RFIDQKVEVVSGTTTNEYLKKLDEALEVAGHTFDPELVIYNAGTD 748
            +V+P  AS E++   H+++YL+ L   S    +   E     L  +C +   + Y +   VGG  L A      G    A+N  GG+HH   DE  GFC   D  L I    ++    RV+ +D+D H G+G E  FS  S+V  + +  F+PG +P   +         R+    V +  G   ++Y +  +  L+    TF+PE V+   G D
Sbjct:    4 VVKPKVASMEEMAAFHTDAYLQHLHKVSEEGDNDDPETLEYGLGYDCPITEGI-YDYAAAVGGATLTAAEQLIEGKTRIAVNWPGGWHHAKKDEASGFCYLNDAVLGI--LKLREKFDRVLYVDMDLHHGDGVEDAFSFTSKVMTVSLHKFSPGFFPGTGDVSDIGLGKGRYYSINVPLQDGIQDDKYYQICEGVLKEVFTTFNPEAVVLQLGAD 215          
BLAST of CF832478 vs. ExPASy Swiss-Prot
Match: HDAC8_HUMAN (Histone deacetylase 8 OS=Homo sapiens GN=HDAC8 PE=1 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.424e-14
Identity = 65/256 (25.39%), Postives = 109/256 (42.58%), Query Frame = 2
Query:   23 IYSPDYNISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQ--SSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKERGW---AINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRVYILDM--FNPGIYPRDYEAR-------RFIDQKVEVVSGTTTNEYLKKLDEALEVAGHTFDPELVIYNAGTD 748
            IYSP+Y      + K+      +   +   + +     +  IV+P  AS E++   H+++YL+ LQ  S        +     L  +C     + + +   +GG  + A      G    AIN  GG+HH   DE  GFC   D  L I    ++    R++ +DLD H G+G E  FS  S+V  + +  F+PG +P   +         R+    V +  G    +Y +  +  L+     F+P+ V+   G D
Sbjct:   19 IYSPEYVSMCDSLAKI----PKRASMVHSLIEAYALHKQMRIVKPKVASMEEMATFHTDAYLQHLQKVSQEGDDDHPDSIEYGLGYDCPATEGI-FDYAAAIGGATITAAQCLIDGMCKVAINWSGGWHHAKKDEASGFCYLNDAVLGI--LRLRRKFERILYVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPGFFPGTGDVSDVGLGKGRYYSVNVPIQDGIQDEKYYQICESVLKEVYQAFNPKAVVLQLGAD 267          
BLAST of CF832478 vs. ExPASy Swiss-Prot
Match: Y130_ARCFU (Uncharacterized protein AF_0130 OS=Archaeoglobus fulgidus GN=AF_0130 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.166e-14
Identity = 66/242 (27.27%), Postives = 103/242 (42.56%), Query Frame = 2
Query:   71 HPFDSSKWGRICQFLSSEGFLDKNCIV--EPLEASKEDLLVVHSESYLKSLQSSPNVSIIIEVP---PVALFPNCLVQRKVLYPFRKQVGGTILAAKLAK----ERGWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRVYILDMFNPGIYPRDYEARRFIDQK-------VEVVSGTTTNEYLKKLDEALEVAGHTFDPELVIYNAGTD 748
            HP    +       L  EG  +   IV  EP +AS ED+L VH+E Y++ L+       II+     PV +F   L+            GG I AA+       E  +A+    G HH     G GFC   ++++ + +   Q    R+ I+D DAH G+G ++ F +D RV  +      +YP           K       + +  GT    Y+  +DE +E   + F P+ +  +AG D
Sbjct:   20 HPERRERLAYTMDQLREEGIFESERIVLLEPFKASLEDVLEVHTEEYVRFLEMESKKGGIIDFDTNIPVGVFDRALLA----------AGGAIRAAQAVLNKECENAFAMIRPPG-HHAKPYIGAGFCYLNNMAIMVKWLLKQ-GFERIAILDWDAHHGDGTQEIFYNDDRVLFISTHQMPLYPGTGYPEECGTGKGEGYTVNIPLPPGTGDEGYMMVIDEIIEPVVNEFKPQFIAISAGQD 249          
BLAST of CF832478 vs. ExPASy Swiss-Prot
Match: HDAC8_RAT (Histone deacetylase 8 OS=Rattus norvegicus GN=Hdac8 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.166e-14
Identity = 69/260 (26.54%), Postives = 110/260 (42.31%), Query Frame = 2
Query:    8 LPLPLIYSPDYNISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQ--SSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKERGW--AINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRVYILDM--FNPGIYPRDYEAR-------RFIDQKVEVVSGTTTNEYLKKLDEALEVAGHTFDPELVIYNAGTD 748
            LP   IYSP+Y      + K+      +   +   + +     +  IV+P  AS E++   H+++YL+ LQ  S        +     L  +C     +        GGTI AA+   +     AIN  GG+HH   DE  GFC   D  L I    ++    R++ +DLD H G+G E  FS  S+V  + +  F+PG +P   +         R+    V +  G    +Y    +  L+     F+P+ V+   G D
Sbjct:   14 LPPVYIYSPEYVSICDSLVKV----PKRASMVHSLIEAYALHKQMRIVKPKVASMEEMATFHTDAYLQHLQKVSQEGDEDHPDSIEYGLGYDCPATEGIFDYAAAIGGGTITAAQCLIDGKCKVAINWSGGWHHAKKDEASGFCYLNDAVLGI--LRLRRKFDRILYVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPGFFPGTGDMSDVGLGKGRYYSVNVPIQDGIQDEKYYHICESVLKEVYQAFNPKAVVLQLGAD 267          
The following BLAST results are available for this feature:
BLAST of CF832478 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
HDA2_ARATH8.103e-11178.69Histone deacetylase 2 OS=Arabidopsis thaliana GN=H... [more]
HDA11_MACFA4.337e-8058.94Histone deacetylase 11 OS=Macaca fascicularis GN=H... [more]
HDA11_HUMAN1.262e-7958.54Histone deacetylase 11 OS=Homo sapiens GN=HDAC11 P... [more]
HDA11_MOUSE6.262e-7958.13Histone deacetylase 11 OS=Mus musculus GN=Hdac11 P... [more]
Y1628_SYNP22.767e-1829.55Uncharacterized protein SYNPCC7002_A1628 OS=Synech... [more]
HDAC8_XENTR1.518e-1629.20Histone deacetylase 8 OS=Xenopus tropicalis GN=hda... [more]
HDAC8_XENLA8.332e-1528.84Histone deacetylase 8 OS=Xenopus laevis GN=hdac8 P... [more]
HDAC8_HUMAN2.424e-1425.39Histone deacetylase 8 OS=Homo sapiens GN=HDAC8 PE=... [more]
Y130_ARCFU3.166e-1427.27Uncharacterized protein AF_0130 OS=Archaeoglobus f... [more]
HDAC8_RAT3.166e-1426.54Histone deacetylase 8 OS=Rattus norvegicus GN=Hdac... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01O18_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01O18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832478 ID=CF832478; Name=CF832478; organism=Citrus sinensis; type=EST; length=753bp
TTCCTATCTTCCGCTCCCTCTGATATACTCGCCTGACTACAATATTTCGT
TTCTTGGCATAGAGAAGCTGCACCCATTTGATTCTTCCAAATGGGGTCGC
ATTTGCCAGTTCCTTAGCTCTGAGGGTTTTCTGGATAAAAATTGTATCGT
TGAGCCACTAGAAGCTTCCAAGGAAGATCTGCTTGTGGTTCATTCAGAAT
CATATTTGAAGAGTCTACAGAGCAGTCCAAATGTTTCCATTATAATTGAG
GTGCCTCCTGTTGCACTATTTCCCAATTGTCTTGTGCAGAGGAAAGTTCT
TTATCCATTTCGCAAGCAGGTGGGTGGAACCATATTGGCAGCTAAGCTTG
CAAAAGAGCGAGGGTGGGCCATTAATGTTGGAGGAGGATTCCATCACTGC
TCTGCTGATGAAGGAGGTGGATTTTGTGCTTATGCAGATATTTCTCTTTG
CATACATTATGCCTTTGTTCAACTAAATATATCAAGGGTCATGATAATTG
ATCTTGATGCACATCAAGGAAATGGTCACGAGAAGGACTTTTCCAGTGAC
AGTCGTGTTTATATTCTGGATATGTTTAACCCTGGAATTTATCCTCGGGA
CTATGAGGCAAGACGTTTTATTGATCAGAAGGTCGAAGTAGTGAGTGGGA
CAACAACAAATGAGTACTTAAAGAAATTAGATGAAGCACTTGAGGTTGCT
GGTCATACGTTTGATCCTGAGCTGGTGATTTACAATGCCGGCACTGATAT
CCT
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