CF832485

Overview
NameCF832485
Unique NameCF832485
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length817
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1015 contig Csv1_Contig1015:303..1119. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF832485 vs. ExPASy Swiss-Prot
Match: CP20A_ARATH (Peptidyl-prolyl cis-trans isomerase CYP20-1 OS=Arabidopsis thaliana GN=CYP20-1 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.848e-12
Identity = 32/43 (74.42%), Postives = 38/43 (88.37%), Query Frame = 3 
Query:  687 SVLCAAWLDGRHVVFGKVLSGMDVVYKVEAERRQNGTPKSKVV 815
            + +  +WLDGRHVVFGKV++GMDVVYKVEAE  Q+GTPKSKVV
Sbjct:  153 TTVTTSWLDGRHVVFGKVVTGMDVVYKVEAEGNQSGTPKSKVV 195
[Close]
BLAST of CF832485 vs. ExPASy Swiss-Prot
Match: CP19D_ARATH (Peptidyl-prolyl cis-trans isomerase CYP19-4 OS=Arabidopsis thaliana GN=CYP19-4 PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 9.848e-12
Identity = 31/43 (72.09%), Postives = 38/43 (88.37%), Query Frame = 3 
Query:  687 SVLCAAWLDGRHVVFGKVLSGMDVVYKVEAERRQNGTPKSKVV 815
            + +  +WLDGRHVVFGKV+ GMDVVYK+EAE +Q+GTPKSKVV
Sbjct:  150 TTVTTSWLDGRHVVFGKVVQGMDVVYKIEAEGKQSGTPKSKVV 192
The following BLAST results are available for this feature:
BLAST of CF832485 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
CP20A_ARATH9.848e-1274.42Peptidyl-prolyl cis-trans isomerase CYP20-1 OS=Ara... [more]
CP19D_ARATH9.848e-1272.09Peptidyl-prolyl cis-trans isomerase CYP19-4 OS=Ara... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_01O22_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01O22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832485 ID=CF832485; Name=CF832485; organism=Citrus sinensis; type=EST; length=817bp
TTTTTTTTTTTGCCGATAATCATCTTTTGTTACATTGCCACTGGGATGGT
GAAGCTGTTCACACATGCCAAATTTTAAGTTTCAAAGTCTAAGCTGTTCA
GCAGAACCCAACACATCCTCCAAGATAAAAGTATATTACACGATGCAAAT
AAAATTATCTCCCATTATCTAACAGATTCAGAAATTGTTTTGCCTCAACT
TCAAAGGTCGCTAAAGCATCCGTCAGCAAAGGTTCCGACCTCAACCTGGG
GCCTCATTTCTCATTACCGCCAAACAGGTAATCCAAGGAAGATCCTCCAC
CAGGGGCCGCATGCACCTTAGTTGTAGGACGATCAGTGAGGAAATTGCCA
CAGTTCTGCCCATCAGCGCGAAAATAGTTGTTGGCATTGTTCCCTGGAAC
TCCAGCTGGAATCTGCTTATTGACTTCTGCAGGTGGTTCTGCAGGTGGTG
CTGCTGCTGGTGCAGCTGTGGTAGCATTTTGAGAAGCTCCAGTGTTTGCA
GGCTCAACTTGGCTCCGAGGAACTTCAGTAGTTTTCGGAGTGGGTTTTGC
CGGAGAAGCCTCTCCAGTTCCAAAAAGGTACCCCAAAGAACTTTGTCCTC
CACCGCTGCTGACTCCACGACCCATAATCTCTCTCTTGAACTTTTATCTA
ACAAATCCTAGATCCTGCACCGATTCTTGCCCTGCGTCAGTGCTTTGTGC
TGCTTGGTTGGATGGCAGGCATGTTGTATTTGGAAAGGTGCTATCGGGGA
TGGATGTAGTTTACAAGGTTGAAGCTGAAAGGAGGCAGAATGGCACTCCG
AAGAGCAAAGTCGTCGT
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