CF832486

Overview
NameCF832486
Unique NameCF832486
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length759
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1015 contig Csv1_Contig1015:1..759. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CF832486 vs. ExPASy Swiss-Prot
Match: CP19D_ARATH (Peptidyl-prolyl cis-trans isomerase CYP19-4 OS=Arabidopsis thaliana GN=CYP19-4 PE=1 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 5.855e-16
Identity = 37/49 (75.51%), Postives = 45/49 (91.84%), Query Frame = -3 
Query:  287 SVLCAAWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGE 433
            + +  +WLDGRHVVFGKV+ GMDVVYK+EAEG+Q+GTPKSKVV+ADSGE
Sbjct:  150 TTVTTSWLDGRHVVFGKVVQGMDVVYKIEAEGKQSGTPKSKVVIADSGE 198
[Close]
BLAST of CF832486 vs. ExPASy Swiss-Prot
Match: CP20A_ARATH (Peptidyl-prolyl cis-trans isomerase CYP20-1 OS=Arabidopsis thaliana GN=CYP20-1 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.703e-15
Identity = 37/49 (75.51%), Postives = 44/49 (89.80%), Query Frame = -3 
Query:  287 SVLCAAWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGE 433
            + +  +WLDGRHVVFGKV++GMDVVYKVEAEG Q+GTPKSKVV+ DSGE
Sbjct:  153 TTVTTSWLDGRHVVFGKVVTGMDVVYKVEAEGNQSGTPKSKVVIVDSGE 201
The following BLAST results are available for this feature:
BLAST of CF832486 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
CP19D_ARATH5.855e-1675.51Peptidyl-prolyl cis-trans isomerase CYP19-4 OS=Ara... [more]
CP20A_ARATH1.703e-1575.51Peptidyl-prolyl cis-trans isomerase CYP20-1 OS=Ara... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_01O22_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01O22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832486 ID=CF832486; Name=CF832486; organism=Citrus sinensis; type=EST; length=759bp
TTTTTTTTTTGCTATGGATTCCAGCATTCGGTACTTATTTCGGTGCTTCC
ATAAGCTTCTTCTACACAAGTTAGAAAAGAAACACTAAATGTGATGAGAT
AGCTATCAGAGAAAAGGATCCCCTTAAAATGAAGCACCAGCTTGGCAAAC
AACCTAGGACATTTTAAAATGTCTATTACATGATAAATAGGCAAATTATG
AGTATCTTCATGAAGGTTGAAAAGACGAGAGGACTAAAAAGGTGTATAGC
GTAATTATATAATTATGGGGGAAATCACAGAGGAAGTTCACCGCTGTCTG
CAACGACGACTTTGCTCTTCGGAGTGCCATTCTGCCTCCCTTCAGCTTCA
ACCTTGTAAACTACATCCATCCCCGATAGCACCTTTCCAAATACAACATG
CCTGCCATCCAACCAAGCAGCACAAAGCACTGACGCAGGGCAAGAATCGG
TGCAGGATCTAGGATTTGTTAGATAAAAGTTCAAGAGAGAGATTATGGGT
CGTGGAGTCAGCAGCGGTGGAGGACAAAGTTCTTTGGGGTACCTTTTTGG
AACTGGAGAGGCTTCTCCGGCAAAACCCACTCCGAAAACTACTGAAGTTC
CTCGGAGCCAAGTTGAGCCTGCAAACACTGGAGCTTCTCAAAATGCTACC
ACAGCTGCACCAGCAGCAGCACCACCTGCAGAACCACCTGCAGAAGTCAA
TAAGCAGATTCCAGCTGGAGTTCCAGGGAACAATGCCAACAACTATTTTC
GCGCTGATG
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