CF832513

Overview
NameCF832513
Unique NameCF832513
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length846
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7127 contig Csv1_Contig7127:242..1087. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832513 vs. ExPASy Swiss-Prot
Match: GATA1_ARATH (GATA transcription factor 1 OS=Arabidopsis thaliana GN=GATA1 PE=2 SV=2)

HSP 1 Score: 176.022 bits (445), Expect = 2.303e-43
Identity = 100/207 (48.31%), Postives = 119/207 (57.49%), Query Frame = -1
Query:  292 EEELEWLSN---FPTVETFVDISSNPNI------------LKQQSPNSVLEXXXXXXXXXXXXXXXXXXXXXXXXXI------MNCCGNLRVPVRARSKLRTRCRRELLNQEAWWGSVHGXXXXXXXXXXXV---IIGRKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSGRLVPEYRPANSPTFSSELHSNSHRKVVEMRRQKQ 840
            EE+LEW+SN   FP +ETFV +  + +             +KQ SP SVLE                                M+CC   + P +ARSK R   RR+L  +  W G+  G               I+GRKCQHCGAEKTPQWRAGP GPKTLCNACGVR+KSGRLVPEYRPANSPTF++ELHSNSHRK+VEMR+Q Q
Sbjct:   58 EEDLEWISNKNAFPVIETFVGVLPSEHFPITSLLEREATEVKQLSPVSVLETSSHSSTTTTSNSSGGSNGSTAVATTTTTPTIMSCCVGFKAPAKARSKRRRTGRRDL--RVLWTGNEQGGIQKKKTMTVAAAALIMGRKCQHCGAEKTPQWRAGPAGPKTLCNACGVRYKSGRLVPEYRPANSPTFTAELHSNSHRKIVEMRKQYQ 262          
BLAST of CF832513 vs. ExPASy Swiss-Prot
Match: GAT14_ARATH (GATA transcription factor 14 OS=Arabidopsis thaliana GN=At5g66320 PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.311e-30
Identity = 58/69 (84.06%), Postives = 64/69 (92.75%), Query Frame = -1
Query:  292 RKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSGRLVPEYRPANSPTFSSELHSNSHRKVVEMRRQKQ 498
            RKC HCG +KTPQWRAGPMG KTLCNACGVR+KSGRL+PEYRPA SPTFSSELHSN HRKV+EMRR+K+
Sbjct:  249 RKCSHCGVQKTPQWRAGPMGAKTLCNACGVRYKSGRLLPEYRPACSPTFSSELHSNHHRKVIEMRRKKE 317          
BLAST of CF832513 vs. ExPASy Swiss-Prot
Match: GAT11_ARATH (GATA transcription factor 11 OS=Arabidopsis thaliana GN=GATA11 PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 4.981e-30
Identity = 57/71 (80.28%), Postives = 63/71 (88.73%), Query Frame = -1
Query:  289 GRKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSGRLVPEYRPANSPTFSSELHSNSHRKVVEMRRQKQM 501
            GR+C HC  EKTPQWR GPMGPKTLCNACGVR+KSGRLVPEYRPA+SPTF    HSNSHRKV+E+RRQK+M
Sbjct:  196 GRRCLHCATEKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPASSPTFVMARHSNSHRKVMELRRQKEM 266          
BLAST of CF832513 vs. ExPASy Swiss-Prot
Match: GATA3_ARATH (GATA transcription factor 3 OS=Arabidopsis thaliana GN=GATA3 PE=2 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 1.449e-29
Identity = 66/132 (50.00%), Postives = 81/132 (61.36%), Query Frame = -1
Query:  256 RVPVRARSKLRTRCRRELLNQEAW----WGSVHGXXXXXXXXXXXVII--GRKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSGRLVPEYRPANSPTFSSELHSNSHRKVVEMRRQKQMMGIELGVLGVK 633
            R+PV+ R+K   R R  L     W        H             ++   R+C HCG   TPQWR GP+GPKTLCNACGVRFKSGRL PEYRPA+SPTFS+E+HSN HRKV+E+R+ K+ +G E G    K
Sbjct:  132 RIPVKPRTK---RSRNSLTGSRVWPLVSTNHQHAATEQLRKKKQETVLVFQRRCSHCGTNNTPQWRTGPVGPKTLCNACGVRFKSGRLCPEYRPADSPTFSNEIHSNLHRKVLELRKSKE-LGEETGEASTK 259          
BLAST of CF832513 vs. ExPASy Swiss-Prot
Match: GATA2_ARATH (GATA transcription factor 2 OS=Arabidopsis thaliana GN=GATA2 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.449e-29
Identity = 56/71 (78.87%), Postives = 64/71 (90.14%), Query Frame = -1
Query:  286 RKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSGRLVPEYRPANSPTFSSELHSNSHRKVVEMRRQKQMM 498
            R+C HC +EKTPQWR GP+GPKTLCNACGVRFKSGRLVPEYRPA+SPTF    HSNSHRKV+E+RRQK++M
Sbjct:  179 RRCTHCASEKTPQWRTGPLGPKTLCNACGVRFKSGRLVPEYRPASSPTFVLTQHSNSHRKVMELRRQKEVM 249          
BLAST of CF832513 vs. ExPASy Swiss-Prot
Match: GATA9_ARATH (GATA transcription factor 9 OS=Arabidopsis thaliana GN=GATA9 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 7.193e-29
Identity = 55/69 (79.71%), Postives = 63/69 (91.30%), Query Frame = -1
Query:  292 RKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSGRLVPEYRPANSPTFSSELHSNSHRKVVEMRRQKQ 498
            R+C HCG +KTPQWRAGP+G KTLCNACGVR+KSGRL+PEYRPA SPTFSSELHSN H KV+EMRR+K+
Sbjct:  221 RQCGHCGVQKTPQWRAGPLGAKTLCNACGVRYKSGRLLPEYRPACSPTFSSELHSNHHSKVIEMRRKKE 289          
BLAST of CF832513 vs. ExPASy Swiss-Prot
Match: GATA4_ARATH (GATA transcription factor 4 OS=Arabidopsis thaliana GN=GATA4 PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.602e-28
Identity = 54/69 (78.26%), Postives = 62/69 (89.86%), Query Frame = -1
Query:  292 RKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSGRLVPEYRPANSPTFSSELHSNSHRKVVEMRRQKQ 498
            R+C HC +EKTPQWR GP+GPKTLCNACGVR+KSGRLVPEYRPA+SPTF    HSNSHRKV+E+RRQK+
Sbjct:  158 RRCTHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRLVPEYRPASSPTFVLTQHSNSHRKVMELRRQKE 226          
BLAST of CF832513 vs. ExPASy Swiss-Prot
Match: GAT13_ARATH (GATA transcription factor 13 OS=Arabidopsis thaliana GN=At5g25830 PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.602e-28
Identity = 55/70 (78.57%), Postives = 61/70 (87.14%), Query Frame = -1
Query:  289 RKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSGRLVPEYRPANSPTFSSELHSNSHRKVVEMRRQKQM 498
            R+C HC  +KTPQWR GPMGPKTLCNACGVR+KSGRLVPEYRPA SPTF    HSNSHRKV+E+RRQK+M
Sbjct:  219 RRCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLAKHSNSHRKVMELRRQKEM 288          
BLAST of CF832513 vs. ExPASy Swiss-Prot
Match: GATA6_ARATH (GATA transcription factor 6 OS=Arabidopsis thaliana GN=GATA6 PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.947e-27
Identity = 53/69 (76.81%), Postives = 59/69 (85.51%), Query Frame = -1
Query:  298 IGRKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSGRLVPEYRPANSPTFSSELHSNSHRKVVEMRRQ 504
            I RKC HC   KTPQWR GP GPKTLCNACGVRF+SGRLVPEYRPA+SPTF   +HSNSHRK++EMRR+
Sbjct:  218 IVRKCTHCETTKTPQWREGPSGPKTLCNACGVRFRSGRLVPEYRPASSPTFIPAVHSNSHRKIIEMRRK 286          
BLAST of CF832513 vs. ExPASy Swiss-Prot
Match: GAT12_ARATH (GATA transcription factor 12 OS=Arabidopsis thaliana GN=At4g36240 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 5.155e-27
Identity = 52/68 (76.47%), Postives = 60/68 (88.24%), Query Frame = -1
Query:  295 RKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSGRLVPEYRPANSPTFSSELHSNSHRKVVEMRRQK 498
            R C HCG +KTPQWR GP+G KTLCNACGVRFKSGRL+PEYRPA SPTF++E+HSNSHRKV+E+R  K
Sbjct:  164 RCCSHCGVQKTPQWRMGPLGAKTLCNACGVRFKSGRLLPEYRPACSPTFTNEIHSNSHRKVLELRLMK 231          
The following BLAST results are available for this feature:
BLAST of CF832513 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
GATA1_ARATH2.303e-4348.31GATA transcription factor 1 OS=Arabidopsis thalian... [more]
GAT14_ARATH1.311e-3084.06GATA transcription factor 14 OS=Arabidopsis thalia... [more]
GAT11_ARATH4.981e-3080.28GATA transcription factor 11 OS=Arabidopsis thalia... [more]
GATA3_ARATH1.449e-2950.00GATA transcription factor 3 OS=Arabidopsis thalian... [more]
GATA2_ARATH1.449e-2978.87GATA transcription factor 2 OS=Arabidopsis thalian... [more]
GATA9_ARATH7.193e-2979.71GATA transcription factor 9 OS=Arabidopsis thalian... [more]
GATA4_ARATH1.602e-2878.26GATA transcription factor 4 OS=Arabidopsis thalian... [more]
GAT13_ARATH1.602e-2878.57GATA transcription factor 13 OS=Arabidopsis thalia... [more]
GATA6_ARATH3.947e-2776.81GATA transcription factor 6 OS=Arabidopsis thalian... [more]
GAT12_ARATH5.155e-2776.47GATA transcription factor 12 OS=Arabidopsis thalia... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01P15_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01P15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832513 ID=CF832513; Name=CF832513; organism=Citrus sinensis; type=EST; length=846bp
TTTTTTTTTTTTTTAAAGAATTAACACTCTTGACTTGCTTTCAATTCCTC
TGAGAACACATAAACCAGACAATAAAACACACATAAAAGCAGAATTTTTC
TAATTAAATTTTTTTTTCCCAAAACAAATTACCAAGTACTAAATCTATCT
GACTTGATTACAAGAAACCCACTAATCCTAAATAAGCTAAACTAAAGAAG
GGGGGAAAAAAATTAAAAAGGACCTACTAAAACTACTCTACCCTTTATCT
ACAGGCTTGACACCCAGCACCCCAAGCTCAATCCCCATCATTTGCTTCTG
TCTCCTCATCTCCACCACTTTTCTATGCGAGTTCGAGTGCAACTCGCTCG
AGAACGTCGGGCTGTTTGCCGGCCGGTACTCCGGCACCAGCCTGCCGGAC
TTAAACCGAACCCCACAAGCATTACAAAGCGTCTTTGGACCCATTGGCCC
AGCCCGCCATTGCGGGGTCTTCTCAGCGCCACAATGCTGACATTTTCTCC
CTATAATCACTTTCGAAACAACCGGTTTCGCAGCTTTCACACTCCCGTGA
ACACTCCCCCACCAGGCCTCCTGGTTCAGAAGCTCGCGGCGGCAACGCGT
GCGAAGCTTGCTCCGGGCACGCACCGGCACGCGCAGGTTCCCGCAGCAGT
TCATAATAATGCTGTTGCTATTGTTGTTACCATTGGTGATAGTGCTGCCA
TTAGTGCTTGTGCTTGAACTGCTGTTGCTGTTTTCTAGAACCGAATTTGG
GCTTTGCTGCTTTAAGATGTTGGGGTTAGAGGAAATGTCGACGAATGTTT
CAACTGTCGGAAAGTTCGAGAGCCATTCGAGTTCTTCTTCTGCACA
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