CF834687

Overview
NameCF834687
Unique NameCF834687
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length739
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF834687_ssr517 microsatellite CF834687_ssr517:517..531. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CF834687 vs. ExPASy Swiss-Prot
Match: 4CL2_SOYBN (4-coumarate--CoA ligase 2 OS=Glycine max PE=2 SV=2)

HSP 1 Score: 271.937 bits (694), Expect = 2.455e-72
Identity = 138/184 (75.00%), Postives = 152/184 (82.61%), Query Frame = -3
Query:  186 KSGSCGTVVRNAELKVIDHEVGASLPHNHRGEICIRGPQIMKGYLNDPEATAAIIDVEGWLHTXXXXXXXXXXXXXXXDRVKEIIKFKGFQVPPSEIEALLLSHPSIADAAVVPQKDEVAGEVPVAFVVRSNGFELAEEAIKEYIAKQVVFYKRLPKIYFVHAIPKSPSGKILRKDLRAKLASS 737
            KSGSCGTVVRNAELKV+D E G SL +N  GEICIRG QIMKGYLND  ATA+ ID EGWLHT               DRVKE+IK+KGFQVPP+E+E LL+SHPSIADAAVVPQKD  AGEVPVAFVVRSNGF+L EEA+KE+IAKQVVFYKRL K+YFVHAIPKSPSGKILRKDLRAKL ++
Sbjct:  374 KSGSCGTVVRNAELKVVDPETGRSLGYNQPGEICIRGQQIMKGYLNDEAATASTIDSEGWLHTGDVGYVDDDDEIFIVDRVKELIKYKGFQVPPAELEGLLVSHPSIADAAVVPQKDVAAGEVPVAFVVRSNGFDLTEEAVKEFIAKQVVFYKRLHKVYFVHAIPKSPSGKILRKDLRAKLETA 557          
BLAST of CF834687 vs. ExPASy Swiss-Prot
Match: 4CL2_ORYSJ (Probable 4-coumarate--CoA ligase 2 OS=Oryza sativa subsp. japonica GN=4CL2 PE=2 SV=2)

HSP 1 Score: 265.003 bits (676), Expect = 3.000e-70
Identity = 133/183 (72.68%), Postives = 154/183 (84.15%), Query Frame = -3
Query:  189 KSGSCGTVVRNAELKVIDHEVGASLPHNHRGEICIRGPQIMKGYLNDPEATAAIIDVEGWLHTXXXXXXXXXXXXXXXDRVKEIIKFKGFQVPPSEIEALLLSHPSIADAAVVPQKDEVAGEVPVAFVVRSNGFELAEEAIKEYIAKQVVFYKRLPKIYFVHAIPKSPSGKILRKDLRAKLAS 737
            KSGSCGTVVRNAELKV+D + G SL  N  GEICIRGPQIMKGYLNDPEATAA IDVEGWLHT               DRVKE+IKFKGFQVPP+E+E+LL++HPSIADAAVVPQKD+VAGEVPVAFVVR+   ++ EE+IKE+I+KQVVFYKRL K++F+HAIPKS SGKILR++LRAKLA+
Sbjct:  386 KSGSCGTVVRNAELKVVDPDTGFSLGRNLPGEICIRGPQIMKGYLNDPEATAATIDVEGWLHTGDIGYVDDDDEVFIVDRVKELIKFKGFQVPPAELESLLIAHPSIADAAVVPQKDDVAGEVPVAFVVRAADSDITEESIKEFISKQVVFYKRLHKVHFIHAIPKSASGKILRRELRAKLAA 568          
BLAST of CF834687 vs. ExPASy Swiss-Prot
Match: 4CL_VANPL (4-coumarate--CoA ligase OS=Vanilla planifolia GN=4CL PE=3 SV=1)

HSP 1 Score: 258.84 bits (660), Expect = 2.150e-68
Identity = 126/189 (66.67%), Postives = 154/189 (81.48%), Query Frame = -3
Query:  174 KSGSCGTVVRNAELKVIDHEVGASLPHNHRGEICIRGPQIMKGYLNDPEATAAIIDVEGWLHTXXXXXXXXXXXXXXXDRVKEIIKFKGFQVPPSEIEALLLSHPSIADAAVVPQKDEVAGEVPVAFVVRSNGFELAEEAIKEYIAKQVVFYKRLPKIYFVHAIPKSPSGKILRKDLRAKL-ASSMPLN 737
            KSG+CGTVVRNAE+K++D E G+SLP NH GEICIRG QIMKGYLNDPEATA  ID EGWLHT               DR+KE+IK+KGFQV P+E+EALLL+HP I+DAAVVP KDE AGEVPVAFVV+SNG  + E+ IK++I+KQV+FYKR+ +++FV AIPK+PSGKILRKDLRA+L A+++P N
Sbjct:  365 KSGACGTVVRNAEMKIVDPETGSSLPRNHPGEICIRGDQIMKGYLNDPEATARTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLLTHPCISDAAVVPMKDEAAGEVPVAFVVKSNGHNITEDEIKQFISKQVIFYKRINRVFFVEAIPKAPSGKILRKDLRARLAAAALPTN 553          
BLAST of CF834687 vs. ExPASy Swiss-Prot
Match: 4CL_PINTA (4-coumarate--CoA ligase OS=Pinus taeda GN=4CL PE=2 SV=1)

HSP 1 Score: 256.529 bits (654), Expect = 1.067e-67
Identity = 126/183 (68.85%), Postives = 153/183 (83.61%), Query Frame = -3
Query:  189 KSGSCGTVVRNAELKVIDHEVGASLPHNHRGEICIRGPQIMKGYLNDPEATAAIIDVEGWLHTXXXXXXXXXXXXXXXDRVKEIIKFKGFQVPPSEIEALLLSHPSIADAAVVPQKDEVAGEVPVAFVVRSNGFELAEEAIKEYIAKQVVFYKRLPKIYFVHAIPKSPSGKILRKDLRAKLAS 737
            KSGSCGTVVRNA++K++D E G SLPHN  GEICIRGP+IMKGY+NDPE+TAA ID EGWLHT               DRVKEIIK+KGFQV P+E+EALL++HPSIADAAVVPQK E AGEVPVAFVV+S+  E++E+ IKE++AKQV+FYK++ ++YFV AIPKSPSGKILRKDLR++LA+
Sbjct:  356 KSGSCGTVVRNAQIKILDTETGESLPHNQAGEICIRGPEIMKGYINDPESTAATIDEEGWLHTGDVEYIDDDEEIFIVDRVKEIIKYKGFQVAPAELEALLVAHPSIADAAVVPQKHEEAGEVPVAFVVKSS--EISEQEIKEFVAKQVIFYKKIHRVYFVDAIPKSPSGKILRKDLRSRLAA 536          
BLAST of CF834687 vs. ExPASy Swiss-Prot
Match: 4CL2_TOBAC (4-coumarate--CoA ligase 2 OS=Nicotiana tabacum GN=4CL2 PE=2 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 1.820e-67
Identity = 124/186 (66.67%), Postives = 151/186 (81.18%), Query Frame = -3
Query:  180 KSGSCGTVVRNAELKVIDHEVGASLPHNHRGEICIRGPQIMKGYLNDPEATAAIIDVEGWLHTXXXXXXXXXXXXXXXDRVKEIIKFKGFQVPPSEIEALLLSHPSIADAAVVPQKDEVAGEVPVAFVVRSNGFELAEEAIKEYIAKQVVFYKRLPKIYFVHAIPKSPSGKILRKDLRAKLASSMP 737
            KSG+CGTVVRNAE+K++D + G SLP N  GEICIRG QIMKGYLNDPEATA  ID EGWL+T               DR+KE+IK+KGFQV P+E+EALLL+HP+I+DAAVVP KDE AGEVPVAFVVRSNG  + E+ +K++I+KQV+FYKR+ +++FV AIPKSPSGKILRKDLRAKLA+ +P
Sbjct:  356 KSGACGTVVRNAEMKIVDPKTGNSLPRNQSGEICIRGDQIMKGYLNDPEATARTIDKEGWLYTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLLNHPNISDAAVVPMKDEQAGEVPVAFVVRSNGSTITEDEVKDFISKQVIFYKRIKRVFFVDAIPKSPSGKILRKDLRAKLAAGLP 541          
BLAST of CF834687 vs. ExPASy Swiss-Prot
Match: 4CL2_PETCR (4-coumarate--CoA ligase 1 OS=Petroselinum crispum GN=4CL2 PE=2 SV=1)

HSP 1 Score: 254.988 bits (650), Expect = 3.105e-67
Identity = 126/183 (68.85%), Postives = 148/183 (80.87%), Query Frame = -3
Query:  189 KSGSCGTVVRNAELKVIDHEVGASLPHNHRGEICIRGPQIMKGYLNDPEATAAIIDVEGWLHTXXXXXXXXXXXXXXXDRVKEIIKFKGFQVPPSEIEALLLSHPSIADAAVVPQKDEVAGEVPVAFVVRSNGFELAEEAIKEYIAKQVVFYKRLPKIYFVHAIPKSPSGKILRKDLRAKLAS 737
            KSG+CGTVVRNAE+K++D E  ASLP N RGEICIRG QIMKGYLNDPE+T   ID EGWLHT               DR+KEIIK+KGFQV P+E+EALLL+HP+I+DAAVVP  DE AGEVPVAFVVR+NGF   EE IK++++KQVVFYKR+ +++FV AIPKSPSGKILRKDLRAK+AS
Sbjct:  357 KSGACGTVVRNAEMKIVDPETNASLPRNQRGEICIRGDQIMKGYLNDPESTRTTIDEEGWLHTGDIGFIDDDDELFIVDRLKEIIKYKGFQVAPAELEALLLTHPTISDAAVVPMIDEKAGEVPVAFVVRTNGFTTTEEEIKQFVSKQVVFYKRIFRVFFVDAIPKSPSGKILRKDLRAKIAS 539          
BLAST of CF834687 vs. ExPASy Swiss-Prot
Match: 4CL1_TOBAC (4-coumarate--CoA ligase 1 OS=Nicotiana tabacum GN=4CL1 PE=2 SV=1)

HSP 1 Score: 254.603 bits (649), Expect = 4.055e-67
Identity = 122/186 (65.59%), Postives = 149/186 (80.11%), Query Frame = -3
Query:  180 KSGSCGTVVRNAELKVIDHEVGASLPHNHRGEICIRGPQIMKGYLNDPEATAAIIDVEGWLHTXXXXXXXXXXXXXXXDRVKEIIKFKGFQVPPSEIEALLLSHPSIADAAVVPQKDEVAGEVPVAFVVRSNGFELAEEAIKEYIAKQVVFYKRLPKIYFVHAIPKSPSGKILRKDLRAKLASSMP 737
            KSG+CGTVVRNAE+K++D + G SLP N  GEICIRG QIMKGYLNDPEAT   ID EGWLHT               DR+KE+IK+KGFQV P+EIEALLL+HP+I+DAAVVP KDE AGEVPVAFVVRSNG  + E+ +K++I+KQV+FYKR+ +++FV  +PKSPSGKILRKDLRA+LA+ +P
Sbjct:  361 KSGACGTVVRNAEMKIVDPDTGCSLPRNQPGEICIRGDQIMKGYLNDPEATTRTIDKEGWLHTGDIGFIDEDDELFIVDRLKELIKYKGFQVAPAEIEALLLNHPNISDAAVVPMKDEQAGEVPVAFVVRSNGSAITEDEVKDFISKQVIFYKRVKRVFFVETVPKSPSGKILRKDLRARLAAGVP 546          
BLAST of CF834687 vs. ExPASy Swiss-Prot
Match: 4CL1_PETCR (4-coumarate--CoA ligase 1 OS=Petroselinum crispum GN=4CL1 PE=2 SV=1)

HSP 1 Score: 253.832 bits (647), Expect = 6.917e-67
Identity = 125/183 (68.31%), Postives = 148/183 (80.87%), Query Frame = -3
Query:  189 KSGSCGTVVRNAELKVIDHEVGASLPHNHRGEICIRGPQIMKGYLNDPEATAAIIDVEGWLHTXXXXXXXXXXXXXXXDRVKEIIKFKGFQVPPSEIEALLLSHPSIADAAVVPQKDEVAGEVPVAFVVRSNGFELAEEAIKEYIAKQVVFYKRLPKIYFVHAIPKSPSGKILRKDLRAKLAS 737
            KSG+CGTVVRNAE+K++D E  ASLP N RGEICIRG QIMKGYLNDPE+T   ID EGWLHT               DR+KEIIK+KGFQV P+E+EALLL+HP+I+DAAVVP  DE AGEVPVAFVVR+NGF   EE IK++++KQVVFYKR+ +++FV AIPKSPSGKILRKDLRA++AS
Sbjct:  357 KSGACGTVVRNAEMKIVDPETNASLPRNQRGEICIRGDQIMKGYLNDPESTRTTIDEEGWLHTGDIGFIDDDDELFIVDRLKEIIKYKGFQVAPAELEALLLTHPTISDAAVVPMIDEKAGEVPVAFVVRTNGFTTTEEEIKQFVSKQVVFYKRIFRVFFVDAIPKSPSGKILRKDLRARIAS 539          
BLAST of CF834687 vs. ExPASy Swiss-Prot
Match: 4CL3_ARATH (4-coumarate--CoA ligase 3 OS=Arabidopsis thaliana GN=4CL3 PE=1 SV=1)

HSP 1 Score: 253.447 bits (646), Expect = 9.034e-67
Identity = 129/181 (71.27%), Postives = 147/181 (81.22%), Query Frame = -3
Query:  195 KSGSCGTVVRNAELKVIDHEVGASLPHNHRGEICIRGPQIMKGYLNDPEATAAIIDVEGWLHTXXXXXXXXXXXXXXXDRVKEIIKFKGFQVPPSEIEALLLSHPSIADAAVVPQKDEVAGEVPVAFVVRSNGFELAEEAIKEYIAKQVVFYKRLPKIYFVHAIPKSPSGKILRKDLRAKL 737
            KSGSCGTVVRNAELKV+  E   SL +N  GEICIRG QIMK YLNDPEAT+A ID EGWLHT               DR+KE+IKFKGFQVPP+E+E+LL++H SIADAAVVPQ DEVAGEVPVAFVVRSNG ++ EE +KEY+AKQVVFYKRL K++FV +IPKSPSGKILRKDL+AKL
Sbjct:  380 KSGSCGTVVRNAELKVVHLETRLSLGYNQPGEICIRGQQIMKEYLNDPEATSATIDEEGWLHTGDIGYVDEDDEIFIVDRLKEVIKFKGFQVPPAELESLLINHHSIADAAVVPQNDEVAGEVPVAFVVRSNGNDITEEDVKEYVAKQVVFYKRLHKVFFVASIPKSPSGKILRKDLKAKL 560          
BLAST of CF834687 vs. ExPASy Swiss-Prot
Match: 4CL4_ORYSJ (Probable 4-coumarate--CoA ligase 4 OS=Oryza sativa subsp. japonica GN=4CL4 PE=2 SV=1)

HSP 1 Score: 248.054 bits (632), Expect = 3.796e-65
Identity = 122/188 (64.89%), Postives = 146/188 (77.66%), Query Frame = -3
Query:  174 KSGSCGTVVRNAELKVIDHEVGASLPHNHRGEICIRGPQIMKGYLNDPEATAAIIDVEGWLHTXXXXXXXXXXXXXXXDRVKEIIKFKGFQVPPSEIEALLLSHPSIADAAVVPQKDEVAGEVPVAFVVRSNGFELAEEAIKEYIAKQVVFYKRLPKIYFVHAIPKSPSGKILRKDLRAKLASSMPLN 737
            KSGSCGTVVRNAELK++D + GA+L  N  GEICIRG QIMKGYLNDPE+T   ID  GWLHT               DR+KEIIK+KGFQVPP+E+EALL++HP I DAAVVP  DE+AGEVPVAF+VR  G  ++E  IK+++AK+VVFYKRL K++F  +IPKSPSGKILRKDLRAKLA+ +P N
Sbjct:  365 KSGSCGTVVRNAELKIVDPDTGATLGRNQSGEICIRGEQIMKGYLNDPESTKNTIDKGGWLHTGDIGYVDDDDEIFIVDRLKEIIKYKGFQVPPAELEALLITHPDIKDAAVVPMIDEIAGEVPVAFIVRIEGSAISENEIKQFVAKEVVFYKRLNKVFFADSIPKSPSGKILRKDLRAKLAAGIPTN 552          
The following BLAST results are available for this feature:
BLAST of CF834687 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 181
Match NameE-valueIdentityDescription
4CL2_SOYBN2.455e-7275.004-coumarate--CoA ligase 2 OS=Glycine max PE=2 SV=2[more]
4CL2_ORYSJ3.000e-7072.68Probable 4-coumarate--CoA ligase 2 OS=Oryza sativa... [more]
4CL_VANPL2.150e-6866.674-coumarate--CoA ligase OS=Vanilla planifolia GN=4... [more]
4CL_PINTA1.067e-6768.854-coumarate--CoA ligase OS=Pinus taeda GN=4CL PE=2... [more]
4CL2_TOBAC1.820e-6766.674-coumarate--CoA ligase 2 OS=Nicotiana tabacum GN=... [more]
4CL2_PETCR3.105e-6768.854-coumarate--CoA ligase 1 OS=Petroselinum crispum ... [more]
4CL1_TOBAC4.055e-6765.594-coumarate--CoA ligase 1 OS=Nicotiana tabacum GN=... [more]
4CL1_PETCR6.917e-6768.314-coumarate--CoA ligase 1 OS=Petroselinum crispum ... [more]
4CL3_ARATH9.034e-6771.274-coumarate--CoA ligase 3 OS=Arabidopsis thaliana ... [more]
4CL4_ORYSJ3.796e-6564.89Probable 4-coumarate--CoA ligase 4 OS=Oryza sativa... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05P12_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05P12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834687 ID=CF834687; Name=CF834687; organism=Citrus sinensis; type=EST; length=739bp
ATAAGAATTATTAATTTTACCAAAATTTATTACAATAACCCTTTGGAAAA
CTACTCATCAGAATTACATATTACAAGCAAACATGATAATTTTTTTTGTC
ACACCATTTGAAGTTCTTGAATGCCAACAACTCAAAGGCGAACAAAAACT
AACGCAATAAATAAGAAGAATTAATTCAAGGGCATTGAAGAGGCCAGCTT
GGCTCTGAGATCTTTCCTCAAAATCTTACCGGAAGGAGATTTTGGAATCG
CATGAACAAAATAAATCTTGGGCAGTCTCTTGTAAAACACTACCTGTTTT
GCTATGTATTCTTTAATGGCTTCCTCGGCAAGTTCAAACCCATTTGATCG
AACTACAAATGCAACTGGAACTTCTCCTGCAACTTCATCTTTTTGCGGAA
CCACAGCTGCATCTGCAATTGATGGGTGGCTTAAAAGGAGGGCTTCAATC
TCCGACGGCGGCACCTGGAATCCTTTGAATTTGATGATTTCCTTGACCCT
ATCGACTATGAAAACCTCATCATCATCATCAACAAAGCCTATGTCACCAG
TATGAAGCCAACCCTCAACGTCTATAATTGCCGCAGTTGCCTCAGGATCA
TTCAAGTAACCTTTCATAATTTGAGGGCCGCGGATGCAAATTTCGCCACG
ATGATTGTGGGGAAGGGAGGCACCAACTTCATGGTCAATAACTTTGAGCT
CAGCATTTCTAACAACCGTGCCACATGATCCTGACTTTG
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