CF834688

Overview
NameCF834688
Unique NameCF834688
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length600
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9587 contig Csv1_Contig9587:484..1083. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834688 vs. ExPASy Swiss-Prot
Match: 4CL2_SOYBN (4-coumarate--CoA ligase 2 OS=Glycine max PE=2 SV=2)

HSP 1 Score: 270.011 bits (689), Expect = 6.417e-72
Identity = 138/205 (67.32%), Postives = 159/205 (77.56%), Query Frame = 1
Query:    1 PFYSFSEILKRVRTSGAKLIITMAQYVDRLPKTD-----KDFTVITIDAPPENCLHFTVLSEADEDQIPEVAIKPDDPVALPFSSGTTGLPRGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSMNSVLLCSLRAGAGVLLMHKFEIGALLELILRYRXXXXXXXXXXXXXXXKNPMVADYDLSSVRVVLSGAA 600
            PFY+  EI K+   S AKLIIT A YVD+L   D     +DF V+T+D PPENCLHF+VLSEA+E  +PEV I PDD VA+PFSSGTTGLP+GV+LTHKSL TSVAQQVDGENPNLYLT  DV+LCVLPLFHI+S+NSVLLC+LRAG+ VLLM KFEIG LLELI R+R               KNPMVAD+DLSS+R+VLSGAA
Sbjct:  124 PFYTAPEIFKQFTVSKAKLIITQAMYVDKLRNHDGAKLGEDFKVVTVDDPPENCLHFSVLSEANESDVPEVEIHPDDAVAMPFSSGTTGLPKGVILTHKSLTTSVAQQVDGENPNLYLTTEDVLLCVLPLFHIFSLNSVLLCALRAGSAVLLMQKFEIGTLLELIQRHRVSVAMVVPPLVLALAKNPMVADFDLSSIRLVLSGAA 328          
BLAST of CF834688 vs. ExPASy Swiss-Prot
Match: 4CL3_ARATH (4-coumarate--CoA ligase 3 OS=Arabidopsis thaliana GN=4CL3 PE=1 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 3.529e-62
Identity = 130/203 (64.04%), Postives = 151/203 (74.38%), Query Frame = 1
Query:    1 PFYSFSEILKRVRTSGAKLIITMAQYVDRLPKTDKDFTVITIDAP-PENCLHFTVLSEADEDQIPE--VAIKPDDPVALPFSSGTTGLPRGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSMNSVLLCSLRAGAGVLLMHKFEIGALLELILRYRXXXXXXXXXXXXXXXKNPMVADYDLSSVRVVLSGAA 600
            PFY+  E+ K++++SGAKLIIT +QYVD+L    ++ T+IT D P PENCL F+ L   DE    +  V I  DD  ALPFSSGTTGLP+GVVLTHKSLITSVAQQVDG+NPNLYL + DV+LCVLPLFHIYS+NSVLL SLR+GA VLLMHKFEIGALL+LI R+R               KNP V  YDLSSVR VLSGAA
Sbjct:  132 PFYTSQELYKQLKSSGAKLIITHSQYVDKLKNLGENLTLITTDEPTPENCLPFSTLITDDETNPFQETVDIGGDDAAALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGDNPNLYLKSNDVILCVLPLFHIYSLNSVLLNSLRSGATVLLMHKFEIGALLDLIQRHRVTIAALVPPLVIALAKNPTVNSYDLSSVRFVLSGAA 334          
BLAST of CF834688 vs. ExPASy Swiss-Prot
Match: 4CL2_TOBAC (4-coumarate--CoA ligase 2 OS=Nicotiana tabacum GN=4CL2 PE=2 SV=1)

HSP 1 Score: 236.498 bits (602), Expect = 7.862e-62
Identity = 117/202 (57.92%), Postives = 153/202 (75.74%), Query Frame = 1
Query:    1 PFYSFSEILKRVRTSGAKLIITMAQYVDRLPKT--DKDFTVITIDAPPENCLHFTVLSEADEDQIPEVAIKPDDPVALPFSSGTTGLPRGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSMNSVLLCSLRAGAGVLLMHKFEIGALLELILRYRXXXXXXXXXXXXXXXKNPMVADYDLSSVRVVLSGAA 600
            P ++ +E++K+ + S AK+I+T A +V+++     + D  +I ID+ PE CLHF+VL++A+E  IPEV I+PDD VALP+SSGTTGLP+GV+LTHK L+TSVAQQVDGENPNLY+ + DV+LCVLPLFHIYS+NSVLLC LR GA +L+M KF+I + LELI RY+               K+PMV DYDLSSVR V+SGAA
Sbjct:  109 PLFTPAEVVKQAKASSAKIIVTQACHVNKVKDYAFENDVKIICIDSAPEGCLHFSVLTQANEHDIPEVEIQPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYIHSEDVMLCVLPLFHIYSLNSVLLCGLRVGAAILIMQKFDIVSFLELIQRYKVTIGPFVPPIVLAIAKSPMVDDYDLSSVRTVMSGAA 310          
BLAST of CF834688 vs. ExPASy Swiss-Prot
Match: 4CL_PINTA (4-coumarate--CoA ligase OS=Pinus taeda GN=4CL PE=2 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 1.483e-60
Identity = 117/202 (57.92%), Postives = 148/202 (73.27%), Query Frame = 1
Query:    1 PFYSFSEILKRVRTSGAKLIITMAQYVDRLPKTDK-DFTVITID-APPENCLHFTVLSEADEDQIPEVAIKPDDPVALPFSSGTTGLPRGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSMNSVLLCSLRAGAGVLLMHKFEIGALLELILRYRXXXXXXXXXXXXXXXKNPMVADYDLSSVRVVLSGAA 600
            PFY   EI K+ + +GA++I+T+A YV++L      D  VITID AP E C H +VL+EADE Q P V I PDD VALP+SSGTTGLP+GV+LTHK L++SVAQQVDGENPNLY  + DV+LCVLPLFHIYS+NSVLLC+LRAGA  L+M KF +   LELI +Y+               K+P+V+ YD+SSVR+++SGAA
Sbjct:  109 PFYKPGEIAKQAKAAGARIIVTLAAYVEKLADLQSHDVLVITIDDAPKEGCQHISVLTEADETQCPAVKIHPDDVVALPYSSGTTGLPKGVMLTHKGLVSSVAQQVDGENPNLYFHSDDVILCVLPLFHIYSLNSVLLCALRAGAATLIMQKFNLTTCLELIQKYKVTVAPIVPPIVLDITKSPIVSQYDVSSVRIIMSGAA 310          
BLAST of CF834688 vs. ExPASy Swiss-Prot
Match: 4CL1_PETCR (4-coumarate--CoA ligase 1 OS=Petroselinum crispum GN=4CL1 PE=2 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 2.141e-59
Identity = 112/202 (55.45%), Postives = 150/202 (74.26%), Query Frame = 1
Query:    1 PFYSFSEILKRVRTSGAKLIITMAQYVDRLPK--TDKDFTVITIDAPPENCLHFTVLSEADEDQIPEVAIKPDDPVALPFSSGTTGLPRGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSMNSVLLCSLRAGAGVLLMHKFEIGALLELILRYRXXXXXXXXXXXXXXXKNPMVADYDLSSVRVVLSGAA 600
            PF++ +E++K+++ S AKLIIT A YVD++     +K+  +I ID  P++CLHF+ L EADE ++PEV I  DD VALP+SSGTTGLP+GV+LTHK L+TSVAQQVDG+NPNLY+ + DV++C+LPLFHIYS+N+VL C LRAG  +L+M KF+I   LELI +Y+               K+P+V  YDLSSVR V+SGAA
Sbjct:  110 PFFTSAEVIKQLKASQAKLIITQACYVDKVKDYAAEKNIQIICIDDAPQDCLHFSKLMEADESEMPEVVINSDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGDNPNLYMHSEDVMICILPLFHIYSLNAVLCCGLRAGVTILIMQKFDIVPFLELIQKYKVTIGPFVPPIVLAIAKSPVVDKYDLSSVRTVMSGAA 311          
BLAST of CF834688 vs. ExPASy Swiss-Prot
Match: 4CL2_PETCR (4-coumarate--CoA ligase 1 OS=Petroselinum crispum GN=4CL2 PE=2 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 4.770e-59
Identity = 112/202 (55.45%), Postives = 150/202 (74.26%), Query Frame = 1
Query:    1 PFYSFSEILKRVRTSGAKLIITMAQYVDRLPK--TDKDFTVITIDAPPENCLHFTVLSEADEDQIPEVAIKPDDPVALPFSSGTTGLPRGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSMNSVLLCSLRAGAGVLLMHKFEIGALLELILRYRXXXXXXXXXXXXXXXKNPMVADYDLSSVRVVLSGAA 600
            PF++ +E++K+++ S AKLIIT A YVD++     +K+  +I ID  P++CLHF+ L EADE ++PEV I  DD VALP+SSGTTGLP+GV+LTHK L+TSVAQQVDG+NPNLY+ + DV++C+LPLFHIYS+N+VL C LRAG  +L+M KF+I   LELI +Y+               K+P+V  YDLSSVR V+SGAA
Sbjct:  110 PFFTSAEVIKQLKASLAKLIITQACYVDKVKDYAAEKNIQIICIDDAPQDCLHFSKLMEADESEMPEVVIDSDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGDNPNLYMHSEDVMICILPLFHIYSLNAVLCCGLRAGVTILIMQKFDIVPFLELIQKYKVTIGPFVPPIVLAIAKSPVVDKYDLSSVRTVMSGAA 311          
BLAST of CF834688 vs. ExPASy Swiss-Prot
Match: 4CL1_TOBAC (4-coumarate--CoA ligase 1 OS=Nicotiana tabacum GN=4CL1 PE=2 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 4.770e-59
Identity = 111/202 (54.95%), Postives = 150/202 (74.26%), Query Frame = 1
Query:    1 PFYSFSEILKRVRTSGAKLIITMAQYVDRLPK--TDKDFTVITIDAPPENCLHFTVLSEADEDQIPEVAIKPDDPVALPFSSGTTGLPRGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSMNSVLLCSLRAGAGVLLMHKFEIGALLELILRYRXXXXXXXXXXXXXXXKNPMVADYDLSSVRVVLSGAA 600
            P ++ +E++K+ + S AK+IIT + +V ++    ++ D  VI ID+ PE CLHF+ L+++DE +IPEV I+PDD VALP+SSGTTGLP+GV+LTHK L+TSVAQQVDGEN NLY+ + DV++CVLPLFHIYS+NS+LLC LR GA +L+M KF+I   LELI +Y+               K+P+V  YDLSSVR V+SGAA
Sbjct:  114 PLFTPAEVVKQAKASSAKIIITQSCFVGKVKDYASENDVKVICIDSAPEGCLHFSELTQSDEHEIPEVKIQPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENANLYMHSEDVLMCVLPLFHIYSLNSILLCGLRVGAAILIMQKFDIAPFLELIQKYKVSIGPFVPPIVLAIAKSPIVDSYDLSSVRTVMSGAA 315          
BLAST of CF834688 vs. ExPASy Swiss-Prot
Match: 4CL2_ORYSJ (Probable 4-coumarate--CoA ligase 2 OS=Oryza sativa subsp. japonica GN=4CL2 PE=2 SV=2)

HSP 1 Score: 223.016 bits (567), Expect = 8.995e-58
Identity = 121/216 (56.02%), Postives = 151/216 (69.91%), Query Frame = 1
Query:    1 PFYSFSEILKRVRTSGAKLIITMAQYVDRLPKT------------DKDFTVITID---APPENCLHF-TVLSEADEDQIPEVAIKPDDPVALPFSSGTTGLPRGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSMNSVLLCSLRAGAGVLLMHKFEIGALLELILRYRXXXXXXXXXXXXXXXKNPMVADYDLSSVRVVLSGAA 600
            PF +  EI K+ + SG KLI+T + YVD+L +             D   TVITID   A PE CL F  ++++ADE  +PEVAI PDDPVALPFSSGTTGLP+GVVLTH+S+++ VAQQVDGENPNL++  GDV LCVLPLFHI+S+NSVLLC++RAGA V LM +FE+GA+L  I R+R               KNP V  +DLSS+R+VLSGAA
Sbjct:  125 PFCTPQEIHKQFKASGVKLILTQSVYVDKLRQHEAFPRIDACTVGDDTLTVITIDDDEATPEGCLPFWDLIADADEGSVPEVAISPDDPVALPFSSGTTGLPKGVVLTHRSVVSGVAQQVDGENPNLHMGAGDVALCVLPLFHIFSLNSVLLCAVRAGAAVALMPRFEMGAMLGAIERWRVTVAAVVPPLVLALAKNPFVERHDLSSIRIVLSGAA 340          
BLAST of CF834688 vs. ExPASy Swiss-Prot
Match: 4CL2_SOLTU (4-coumarate--CoA ligase 2 OS=Solanum tuberosum GN=4CL2 PE=3 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 2.004e-57
Identity = 107/202 (52.97%), Postives = 149/202 (73.76%), Query Frame = 1
Query:    1 PFYSFSEILKRVRTSGAKLIITMAQYVDRLPK--TDKDFTVITIDAPPENCLHFTVLSEADEDQIPEVAIKPDDPVALPFSSGTTGLPRGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSMNSVLLCSLRAGAGVLLMHKFEIGALLELILRYRXXXXXXXXXXXXXXXKNPMVADYDLSSVRVVLSGAA 600
            P ++ +E++K+ + S AK++IT A +  ++     + D  VI +D+ PE C+HF+ L ++DE +IP+V I+PDD VALP+SSGTTGLP+GV+LTHK L+TSVAQQVDGEN NLY+ + DV++CVLPLFHIYS+NSVLLC+LR GA +L+M KF+I   LELI +++               K+P+V +YDLSSVR V+SGAA
Sbjct:  112 PLFTPAEVVKQAKASSAKIVITQACFAGKVKDYAIENDLKVICVDSAPEGCVHFSELIQSDEHEIPDVKIQPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENANLYMHSDDVLMCVLPLFHIYSLNSVLLCALRVGAAILIMQKFDIAQFLELIPKHKVTIGPFVPPIVLAIAKSPLVHNYDLSSVRTVMSGAA 313          
BLAST of CF834688 vs. ExPASy Swiss-Prot
Match: 4CL1_SOLTU (4-coumarate--CoA ligase 1 OS=Solanum tuberosum GN=4CL1 PE=3 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 2.617e-57
Identity = 107/202 (52.97%), Postives = 149/202 (73.76%), Query Frame = 1
Query:    1 PFYSFSEILKRVRTSGAKLIITMAQYVDRLPK--TDKDFTVITIDAPPENCLHFTVLSEADEDQIPEVAIKPDDPVALPFSSGTTGLPRGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHIYSMNSVLLCSLRAGAGVLLMHKFEIGALLELILRYRXXXXXXXXXXXXXXXKNPMVADYDLSSVRVVLSGAA 600
            P ++ +E++K+ + S AK++IT A +  ++     + D  VI +D+ PE C+HF+ L ++DE +IP+V I+PDD VALP+SSGTTGLP+GV+LTHK L+TSVAQQVDGEN NLY+ + DV++CVLPLFHIYS+NSVLLC+LR GA +L+M KF+I   LELI +++               K+P+V +YDLSSVR V+SGAA
Sbjct:  112 PLFTPAEVVKQAKASSAKIVITQACFAGKVKDYAIENDLKVICVDSVPEGCVHFSELIQSDEHEIPDVKIQPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENANLYMHSDDVLMCVLPLFHIYSLNSVLLCALRVGAAILIMQKFDIAQFLELIPKHKVTIGPFVPPIVLAIAKSPLVDNYDLSSVRTVMSGAA 313          
The following BLAST results are available for this feature:
BLAST of CF834688 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
4CL2_SOYBN6.417e-7267.324-coumarate--CoA ligase 2 OS=Glycine max PE=2 SV=2[more]
4CL3_ARATH3.529e-6264.044-coumarate--CoA ligase 3 OS=Arabidopsis thaliana ... [more]
4CL2_TOBAC7.862e-6257.924-coumarate--CoA ligase 2 OS=Nicotiana tabacum GN=... [more]
4CL_PINTA1.483e-6057.924-coumarate--CoA ligase OS=Pinus taeda GN=4CL PE=2... [more]
4CL1_PETCR2.141e-5955.454-coumarate--CoA ligase 1 OS=Petroselinum crispum ... [more]
4CL2_PETCR4.770e-5955.454-coumarate--CoA ligase 1 OS=Petroselinum crispum ... [more]
4CL1_TOBAC4.770e-5954.954-coumarate--CoA ligase 1 OS=Nicotiana tabacum GN=... [more]
4CL2_ORYSJ8.995e-5856.02Probable 4-coumarate--CoA ligase 2 OS=Oryza sativa... [more]
4CL2_SOLTU2.004e-5752.974-coumarate--CoA ligase 2 OS=Solanum tuberosum GN=... [more]
4CL1_SOLTU2.617e-5752.974-coumarate--CoA ligase 1 OS=Solanum tuberosum GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05P12_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05P12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834688 ID=CF834688; Name=CF834688; organism=Citrus sinensis; type=EST; length=600bp
CCCTTCTACTCCTTTTCTGAAATCTTGAAACGGGTCAGAACCTCTGGTGC
CAAATTGATTATCACAATGGCTCAGTACGTCGACAGGTTGCCGAAGACGG
ACAAAGATTTCACAGTGATCACGATCGATGCCCCTCCGGAGAATTGCCTG
CATTTCACAGTGTTATCGGAAGCAGATGAGGATCAAATCCCAGAAGTTGC
CATCAAGCCCGACGATCCTGTGGCGTTGCCCTTCTCTTCGGGCACCACGG
GATTGCCTAGAGGAGTGGTGCTGACGCACAAGAGCTTGATCACCAGCGTG
GCGCAGCAAGTGGATGGAGAGAACCCGAATCTTTACTTGACAAACGGAGA
CGTTGTGCTGTGCGTTTTACCTTTGTTTCACATTTATTCGATGAACAGCG
TGCTTCTGTGCTCGTTGAGAGCTGGGGCTGGGGTTCTGTTGATGCACAAG
TTTGAGATAGGGGCGCTGCTGGAGCTGATACTGCGGTACAGGGTGTCGGT
GGCGGCTGAGGTGCCGCCCTTGGTGCTGGCTCTGGCCAAGAACCCGATGG
TGGCGGATTATGACCTGAGCTCGGTCAGGGTGGTGCTTTCCGGGGCGGCG
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