CF834698

Overview
NameCF834698
Unique NameCF834698
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length554
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10176 contig Csv1_Contig10176:249..802. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF834698 vs. ExPASy Swiss-Prot
Match: ASP_THECC (21 kDa seed protein OS=Theobroma cacao GN=ASP PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 7.359e-13
Identity = 47/132 (35.61%), Postives = 66/132 (50.00%), Query Frame = -3 
Query:  106 IVKVSPDVNLRFPVKVSVKPCNEEPLWKADSYDAPL----IVTGGSEGPPGAETLVNWFKIGKAGNFSYGGVYNIVHCPGVCLSCPRRCNKIGVSTKDGVRRLLLVGDQEPALNVVFFPSEESSRLLQAVNA 489
            +V+VS DVN+ F V +  + C+   +W+ D+YD       + T G +G PG  TL +WFKI KAG       Y    CP VC SC   C+ IG  + D  +  L + D E A    +   + S  + Q VNA
Sbjct:   97 VVRVSTDVNIEF-VPIRDRLCSTSTVWRLDNYDNSAGKWWVTTDGVKGEPGPNTLCSWFKIEKAGVLG----YKFRFCPSVCDSCTTLCSDIGRHSDDDGQIRLALSDNEWA----WMFKKASKTIKQVVNA 219
[Close]
BLAST of CF834698 vs. ExPASy Swiss-Prot
Match: MIRA_RICDU (Miraculin OS=Richadella dulcifica PE=1 SV=3)

HSP 1 Score: 71.2478 bits (173), Expect = 3.652e-12
Identity = 44/123 (35.77%), Postives = 63/123 (51.22%), Query Frame = -3 
Query:  175 LRFLPYDNYK--IVKVSPDVNLRFPVKVSVKPCN--EEPLWKADSYDAP----LIVTGGSEGPPGAETLVNWFKIGKAGNFSYGGVYNIVHCPGVCLSCPRRCNKIGVSTKDGVRRLLLVGDQ 519
            L F P +N K  +V+VS D+N+ F    +  PC      +W+ D YD       +  GG +G PG ET+ +WFKI +   F   G Y +V CP VC SC  +C  +G+      RR L + D+
Sbjct:   93 LAFFP-ENPKEDVVRVSTDLNINFS---AFMPCRWTSSTVWRLDKYDESTGQYFVTIGGVKGNPGPETISSWFKIEE---FCGSGFYKLVFCPTVCGSCKVKCGDVGIYIDQKGRRRLALSDK 208
The following BLAST results are available for this feature:
BLAST of CF834698 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
ASP_THECC7.359e-1335.6121 kDa seed protein OS=Theobroma cacao GN=ASP PE=2... [more]
MIRA_RICDU3.652e-1235.77Miraculin OS=Richadella dulcifica PE=1 SV=3[more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_05P18_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05P18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834698 ID=CF834698; Name=CF834698; organism=Citrus sinensis; type=EST; length=554bp
AGATAGAAGGTTACCATCCTGGACTATAATTTAGAATGATACAGCTAAGC
TCATTCATTACGCGGCCGTTGATATTGCTTCAGCAGCTTCAAAAAACCTT
GATATTGCGTTAACAGCTTGAAGTAGCCTTGAGCTTTCCTCTGAGGGAAA
AAACACAACATTCAAAGCCGGTTCTTGATCACCAACTAGAAGCAGACGCC
GAACGCCATCCTTAGTTGAAACGCCAATTTTGTTGCAGCGTCTAGGACAA
GATAGACAGACACCCGGACAATGGACAATATTGTATACACCACCGTATGA
AAAATTTCCAGCTTTCCCAATCTTAAACCAATTTACCAACGTTTCAGCTC
CTGGGGGGCCCTCACTTCCGCCGGTTACAATTAAGGGAGCGTCATAGCTA
TCAGCTTTCCACAAGGGTTCTTCATTACAGGGCTTAACAGAAACTTTTAC
GGGGAATCTCAGGTTGACATCAGGGGATACCTTGACAATTTTGTAATTGT
CGTACGGAAGGAATCTTAAATTATCTCCCCTTTCGCTAGGAGAACTTAAT
TGGA
back to top