CF834702

Overview
NameCF834702
Unique NameCF834702
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length574
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834702 vs. ExPASy Swiss-Prot
Match: PUB3_ARATH (U-box domain-containing protein 3 OS=Arabidopsis thaliana GN=PUB3 PE=2 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 5.302e-17
Identity = 47/96 (48.96%), Postives = 64/96 (66.67%), Query Frame = 2
Query:    8 RGLVVLSLLAGIAPVREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLREPR 295
            + + +L+ L+ +   R+AIV E GI  LVE ++ GS +GKE A   LLQLC  S K   L+++EG IPPLVALSQ+G+ RAK KA+ LL + R  R
Sbjct:  656 KAVALLANLSAVGEGRQAIVREGGIPLLVETVDLGSQRGKENAASVLLQLCLNSPKFCTLVLQEGAIPPLVALSQSGTQRAKEKAQQLLSHFRNQR 751          
BLAST of CF834702 vs. ExPASy Swiss-Prot
Match: PUB2_ARATH (U-box domain-containing protein 2 OS=Arabidopsis thaliana GN=PUB2 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 9.044e-17
Identity = 48/97 (49.48%), Postives = 63/97 (64.95%), Query Frame = 2
Query:    8 RGLVVLSLLAGIAPVREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLREPRQ 298
            + +VVL+ LA +   + AI EE GI  LVE +E GS +GKE A   LLQLC  S K    ++REG IPPLVAL+++G+ R K KA+ LL Y +  RQ
Sbjct:  605 KAVVVLANLATVREGKIAIGEEGGIPVLVEVVELGSARGKENATAALLQLCTHSPKFCNNVIREGVIPPLVALTKSGTARGKEKAQNLLKYFKAHRQ 701          
BLAST of CF834702 vs. ExPASy Swiss-Prot
Match: PUB4_ARATH (U-box domain-containing protein 4 OS=Arabidopsis thaliana GN=PUB4 PE=1 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 7.166e-14
Identity = 42/88 (47.73%), Postives = 58/88 (65.91%), Query Frame = 2
Query:    8 RGLVVLSLLAGIAPVREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETL 271
            + + VL+ LA I   R AI +E GI  LVE +E GS +GKE A   LLQL   S +   ++++EG +PPLVALSQ+G+ RA+ K +TL
Sbjct:  724 KAVAVLANLATIPEGRNAIGQEGGIPLLVEVVELGSARGKENAAAALLQLSTNSGRFCNMVLQEGAVPPLVALSQSGTPRAREKVQTL 811          
The following BLAST results are available for this feature:
BLAST of CF834702 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
PUB3_ARATH5.302e-1748.96U-box domain-containing protein 3 OS=Arabidopsis t... [more]
PUB2_ARATH9.044e-1749.48U-box domain-containing protein 2 OS=Arabidopsis t... [more]
PUB4_ARATH7.166e-1447.73U-box domain-containing protein 4 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_05P20_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05P20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834702 ID=CF834702; Name=CF834702; organism=Citrus sinensis; type=EST; length=574bp
GATGGGGAGAGGCCTGGTTGTGTTGAGTTTATTGGCCGGGATTGCCCCCG
TTAGAGAAGCTATTGTTGAGGAAAACGGGATTGCTGCTCTTGTGGAGGCT
ATTGAAGATGGGAGTGTTAAGGGGAAGGAGTTTGCCGTGTTGACTTTGTT
GCAGTTGTGCGCTGAGAGTGTGAAGAACAGGGGATTGCTGGTTCGAGAAG
GAGGGATTCCCCCGCTGGTTGCCCTTTCCCAAACTGGGAGCGTGAGAGCT
AAGCATAAGGCTGAGACGCTTCTTGGGTATCTGAGAGAACCAAGACAAGA
GGGTCCGTCATCAAGTCCTTGAGAGAATGCATAGTTTAATTACTTTAGAA
AGGTAATTATCCTAAGTGGTTGTTTTGATGTATATAGAGGGTGTGTTTTG
GTGGTTTGTACATCGTGGTTGAGAAATTTGGAAGAATGATTTGTAGAATT
GAGAATGTTAGGGGAAGACTAGCCAGTAAAAACTGACCTTTTTGATGTAT
GATTGTAACTAGATTTTGGGTTTTTCCCCCCACCGTTATTGACTAATGTT
TTGGCTTCAAAAAAAAAAAAAAAA
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