CF834703

Overview
NameCF834703
Unique NameCF834703
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length581
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834703 vs. ExPASy Swiss-Prot
Match: PUB2_ARATH (U-box domain-containing protein 2 OS=Arabidopsis thaliana GN=PUB2 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.805e-20
Identity = 54/100 (54.00%), Postives = 68/100 (68.00%), Query Frame = -3
Query:  280 MAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLREPRQ 579
            M EKA+VVL+ LA + EG+ AI EE GI  LVE +E GS +GKE A   LLQLC  S K    ++REG IPPLVAL+++G+ R K KA+ LL Y +  RQ
Sbjct:  602 MVEKAVVVLANLATVREGKIAIGEEGGIPVLVEVVELGSARGKENATAALLQLCTHSPKFCNNVIREGVIPPLVALTKSGTARGKEKAQNLLKYFKAHRQ 701          
BLAST of CF834703 vs. ExPASy Swiss-Prot
Match: PUB3_ARATH (U-box domain-containing protein 3 OS=Arabidopsis thaliana GN=PUB3 PE=2 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 2.357e-20
Identity = 52/99 (52.53%), Postives = 69/99 (69.70%), Query Frame = -3
Query:  283 MAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLREPR 579
            M +KA+ +L+ L+ + EGR+AIV E GI  LVE ++ GS +GKE A   LLQLC  S K   L+++EG IPPLVALSQ+G+ RAK KA+ LL + R  R
Sbjct:  653 MVDKAVALLANLSAVGEGRQAIVREGGIPLLVETVDLGSQRGKENAASVLLQLCLNSPKFCTLVLQEGAIPPLVALSQSGTQRAKEKAQQLLSHFRNQR 751          
BLAST of CF834703 vs. ExPASy Swiss-Prot
Match: PUB4_ARATH (U-box domain-containing protein 4 OS=Arabidopsis thaliana GN=PUB4 PE=1 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 3.186e-17
Identity = 47/91 (51.65%), Postives = 63/91 (69.23%), Query Frame = -3
Query:  307 MAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETL 579
            M +KA+ VL+ LA I EGR AI +E GI  LVE +E GS +GKE A   LLQL   S +   ++++EG +PPLVALSQ+G+ RA+ K +TL
Sbjct:  721 MVDKAVAVLANLATIPEGRNAIGQEGGIPLLVEVVELGSARGKENAAAALLQLSTNSGRFCNMVLQEGAVPPLVALSQSGTPRAREKVQTL 811          
The following BLAST results are available for this feature:
BLAST of CF834703 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
PUB2_ARATH1.805e-2054.00U-box domain-containing protein 2 OS=Arabidopsis t... [more]
PUB3_ARATH2.357e-2052.53U-box domain-containing protein 3 OS=Arabidopsis t... [more]
PUB4_ARATH3.186e-1751.65U-box domain-containing protein 4 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_05P20_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05P20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834703 ID=CF834703; Name=CF834703; organism=Citrus sinensis; type=EST; length=581bp
TTTTTTTTTTCTTTTTATGGAAGCCAAAACATTAGTCAATAACGGTGGGG
GCCTTAACCCAAAATCTAGTTACAATCATACATCAAAAAGGTCAGTTTTT
ACTGGCTAGTCTTCCCCTAACATTCTCAATTCTACAAATCATTCTTCCAA
ATTTCTCAACCACGATGGACAAACCACCAAAACACACCCTCTATATACAT
CAAAACAACCACTTAGGATAATTACCTTTCTAAAGTAATTAAACTATGCA
TTCTCTCAAGGACTTGATGACGGACCCTCTTGTCTTGGTTCTCTCAGATA
CCCAAGAAGCGTCTCAGCCTTATGCTTAGCTCTCACGCTCCCAGTTTGGG
AAAGGGCAACCAGCGGGGGAATCCCTCCTTCTCGAACCAGCAATCCCCTG
TTCTTCACACTCTCAGCGCACAACTGCAACAAAGTCAACACGGCAAACTC
CTTCCCCTTAACACTCCCATCTTCAATAGCCTCCACAAGAGCAGCAATCC
CGTTTTCCTCAACAATAGCTTCTCTCCCCTCGGCAATCCCGGCCAATAAA
CTCAACACAACCATGGCCTTCTCCGCCATTC
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