CF834719

Overview
NameCF834719
Unique NameCF834719
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length656
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11638 contig Csv1_Contig11638:55..710. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834719 vs. ExPASy Swiss-Prot
Match: RL83_ARATH (60S ribosomal protein L8-3 OS=Arabidopsis thaliana GN=RPL8C PE=2 SV=2)

HSP 1 Score: 421.009 bits (1081), Expect = 2.669e-117
Identity = 193/213 (90.61%), Postives = 209/213 (98.12%), Query Frame = 3
Query:   18 MGRVIRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGG 656
            MGRVIRAQRKGAGSVFKSHTHHRKGPA+FRSLDFGERNGYLKGVV EIIHDPGRGAPLARV FRHPFR+ KQKELF+AAEGMYTGQF+YCGKKATL+VGNVLP+RSIPEGAV+CNVEHHVGDRGV ARASGDYA++I+HNPDNDT+R+KLPSG+KKI+PSGCRAMIGQVAGGGRTEKP+LKAGNAYHK+RVKRNCWPKVRGVAMNPVEHPHGG
Sbjct:    1 MGRVIRAQRKGAGSVFKSHTHHRKGPAKFRSLDFGERNGYLKGVVTEIIHDPGRGAPLARVAFRHPFRFKKQKELFVAAEGMYTGQFLYCGKKATLVVGNVLPLRSIPEGAVICNVEHHVGDRGVFARASGDYAIVIAHNPDNDTSRIKLPSGSKKIVPSGCRAMIGQVAGGGRTEKPMLKAGNAYHKYRVKRNCWPKVRGVAMNPVEHPHGG 213          
BLAST of CF834719 vs. ExPASy Swiss-Prot
Match: RL81_ARATH (60S ribosomal protein L8-1 OS=Arabidopsis thaliana GN=RPL8A PE=2 SV=2)

HSP 1 Score: 420.624 bits (1080), Expect = 3.486e-117
Identity = 195/213 (91.55%), Postives = 210/213 (98.59%), Query Frame = 3
Query:   18 MGRVIRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGG 656
            MGRVIRAQRKGAGSVFKSHTHHRKGPA+FRSLDFGERNGYLKGVV EIIHDPGRGAPLARVTFRHPFR+ KQKELF+AAEGMYTGQF+YCGKKATL+VGNVLP+RSIPEGAVVCNVEHHVGDRGVLARASGDYA++I+HNPD+DTTR+KLPSG+KKI+PSGCRAMIGQVAGGGRTEKP+LKAGNAYHK+RVKRN WPKVRGVAMNPVEHPHGG
Sbjct:    1 MGRVIRAQRKGAGSVFKSHTHHRKGPAKFRSLDFGERNGYLKGVVTEIIHDPGRGAPLARVTFRHPFRFKKQKELFVAAEGMYTGQFLYCGKKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVLARASGDYAIVIAHNPDSDTTRIKLPSGSKKIVPSGCRAMIGQVAGGGRTEKPMLKAGNAYHKYRVKRNSWPKVRGVAMNPVEHPHGG 213          
BLAST of CF834719 vs. ExPASy Swiss-Prot
Match: RL8_SOLLC (60S ribosomal protein L8 OS=Solanum lycopersicum GN=RPL8 PE=2 SV=1)

HSP 1 Score: 419.853 bits (1078), Expect = 5.947e-117
Identity = 195/213 (91.55%), Postives = 206/213 (96.71%), Query Frame = 3
Query:   18 MGRVIRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGG 656
            MGRVIRAQRKGAGSVFKSHTHHRKGPA+FR+LDFGERNGYLKGV+ E+IHDPGRGAPLARVTFRHPFRY  QKELF+AAEGMYTGQFVYCGKKATLMVGNVLP+RSIPEGAVVCNVEH VGDRGV AR SGDYA++ISHNPDN TTRVKLPSGAKKI+PSGCRAMIGQVAGGGRTEKP+LKAGNAYHK+RVKRNCWPKVRGVAMNPVEHPHGG
Sbjct:    1 MGRVIRAQRKGAGSVFKSHTHHRKGPARFRTLDFGERNGYLKGVITEVIHDPGRGAPLARVTFRHPFRYKHQKELFVAAEGMYTGQFVYCGKKATLMVGNVLPLRSIPEGAVVCNVEHKVGDRGVFARCSGDYAIVISHNPDNGTTRVKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPMLKAGNAYHKYRVKRNCWPKVRGVAMNPVEHPHGG 213          
BLAST of CF834719 vs. ExPASy Swiss-Prot
Match: RL8_TOBAC (60S ribosomal protein L8 OS=Nicotiana tabacum GN=RPL8 PE=2 SV=1)

HSP 1 Score: 410.609 bits (1054), Expect = 3.608e-114
Identity = 190/213 (89.20%), Postives = 204/213 (95.77%), Query Frame = 3
Query:   18 MGRVIRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGG 656
            MGR+IRAQRKGAGSVFKSHTHHRKGPA+FRSLDFGERNGYLKGV+ E+IHDPGRGAPLARVTFR+PFRY  QKELF+AAEGMYTGQFVYCGKKATLMVGNVLP+RSIPEGAVVCNVEH VGDRGV AR SG YA++ISHNPDN TTR+KLPSG+KKI+PSGCR MIGQVAGGGRTEKP+LKAGNAYHK+RVKRNCWPKVRGVAMNPVEHPHGG
Sbjct:    1 MGRLIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVITEVIHDPGRGAPLARVTFRYPFRYNHQKELFVAAEGMYTGQFVYCGKKATLMVGNVLPLRSIPEGAVVCNVEHKVGDRGVFARCSGAYAIVISHNPDNGTTRIKLPSGSKKIVPSGCRRMIGQVAGGGRTEKPMLKAGNAYHKYRVKRNCWPKVRGVAMNPVEHPHGG 213          
BLAST of CF834719 vs. ExPASy Swiss-Prot
Match: RL82_ARATH (60S ribosomal protein L8-2 OS=Arabidopsis thaliana GN=RPL8B PE=2 SV=2)

HSP 1 Score: 397.127 bits (1019), Expect = 4.128e-110
Identity = 185/214 (86.45%), Postives = 203/214 (94.86%), Query Frame = 3
Query:   18 MGRVIRAQRKGA-GSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGG 656
            MGRVIRAQRKGA GSVFKSHTHHRKGPA+FRSLD+GERNGYLKG+V EIIHDPGRGAPLARV FRHPFRYMKQKELF+AAEGMYTGQ++YCGKKA LMVGNVLP+ SIPEGAV+CNVE HVGDRG LARASGDYA++I+HNP+++TTRVKLPSG+KKI+PS CRAMIGQVAGGGRTEKP LKAGNAYHK++ KRNCWP VRGVAMNPVEHPHGG
Sbjct:    1 MGRVIRAQRKGAAGSVFKSHTHHRKGPAKFRSLDYGERNGYLKGLVTEIIHDPGRGAPLARVAFRHPFRYMKQKELFVAAEGMYTGQYLYCGKKANLMVGNVLPLGSIPEGAVICNVELHVGDRGALARASGDYAIVIAHNPESNTTRVKLPSGSKKILPSACRAMIGQVAGGGRTEKPFLKAGNAYHKYKAKRNCWPVVRGVAMNPVEHPHGG 214          
BLAST of CF834719 vs. ExPASy Swiss-Prot
Match: RL8_ANOGA (60S ribosomal protein L8 OS=Anopheles gambiae GN=RpL8 PE=2 SV=2)

HSP 1 Score: 333.954 bits (855), Expect = 4.292e-91
Identity = 155/213 (72.77%), Postives = 180/213 (84.51%), Query Frame = 3
Query:   18 MGRVIRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGG 656
            MGRVIRAQRKGAGSVF++HT  RKG  + R LD+ ER+GYLKGVV +IIHDPGRGAPLA V FR P+R+   K+LFIAAEGMYTGQFVYCG++A L +GNVLP+  +PEG +VCN+E   GDRG LAR SG+YA +I+HNPD   TRVKLPSGAKK++PS  RAMIG VAGGGR +KP+LKAG AYHK++VKRNCWPKVRGVAMNPVEHPHGG
Sbjct:    1 MGRVIRAQRKGAGSVFRAHTKKRKGEPKLRHLDYAERHGYLKGVVKQIIHDPGRGAPLAVVNFRDPYRFRLSKQLFIAAEGMYTGQFVYCGRRAQLQIGNVLPIGLMPEGTIVCNLEEKTGDRGKLARTSGNYASVIAHNPDTKRTRVKLPSGAKKVLPSANRAMIGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPKVRGVAMNPVEHPHGG 213          
BLAST of CF834719 vs. ExPASy Swiss-Prot
Match: RL8_SPOFR (60S ribosomal protein L8 OS=Spodoptera frugiperda GN=RpL8 PE=2 SV=1)

HSP 1 Score: 331.643 bits (849), Expect = 2.130e-90
Identity = 155/213 (72.77%), Postives = 181/213 (84.98%), Query Frame = 3
Query:   18 MGRVIRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGG 656
            MGRVIRAQRKGAGSVF SHT  RKG  + RSLD+ ER+GY+KGVV +IIHDPGRGAPLA V FR P+++  +KELFIA EG+YTGQFVYCGKKATL VGNV+PV ++PEG +VCN+E  +GDRG LARASG++A +I HNPD   TRVKLPSGAKK++PS  R M+G VAGGGR +KP+LKAG AYHK++VKRNCWP VRGVAMNPVEHPHGG
Sbjct:    1 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGG 213          
BLAST of CF834719 vs. ExPASy Swiss-Prot
Match: RL8_MAMBR (60S ribosomal protein L8 OS=Mamestra brassicae GN=RpL8 PE=2 SV=1)

HSP 1 Score: 331.643 bits (849), Expect = 2.130e-90
Identity = 155/213 (72.77%), Postives = 181/213 (84.98%), Query Frame = 3
Query:   18 MGRVIRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGG 656
            MGRVIRAQRKGAGSVF SHT  RKG  + RSLD+ ER+GY+KGVV +IIHDPGRGAPLA V FR P+++  +KELFIA EG+YTGQFVYCGKKATL VGNV+PV ++PEG +VCN+E  +GDRG LARASG++A +I HNPD   TRVKLPSGAKK++PS  R M+G VAGGGR +KP+LKAG AYHK++VKRNCWP VRGVAMNPVEHPHGG
Sbjct:    1 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGG 213          
BLAST of CF834719 vs. ExPASy Swiss-Prot
Match: RL8_DROME (60S ribosomal protein L8 OS=Drosophila melanogaster GN=RpL8 PE=2 SV=1)

HSP 1 Score: 330.487 bits (846), Expect = 4.745e-90
Identity = 153/213 (71.83%), Postives = 180/213 (84.51%), Query Frame = 3
Query:   18 MGRVIRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGG 656
            MGRVIRAQRKGAGSVFK+H   RKG A+ RSLDF ER+GY++GVV +IIHDPGRGAPLA V FR P+RY  +KELFIA EGM+TGQFVYCG+KATL +GNV+P+  +PEG ++CN+E   GDRG LAR SG+YA +I+HN D   TRVKLPSGAKK++PS  RAM+G VAGGGR +KP+LKAG AYHK++VKRN WPKVRGVAMNPVEHPHGG
Sbjct:    1 MGRVIRAQRKGAGSVFKAHVKKRKGAAKLRSLDFAERSGYIRGVVKDIIHDPGRGAPLAVVHFRDPYRYKIRKELFIAPEGMHTGQFVYCGRKATLQIGNVMPLSQMPEGTIICNLEEKTGDRGRLARTSGNYATVIAHNQDTKKTRVKLPSGAKKVVPSANRAMVGIVAGGGRIDKPILKAGRAYHKYKVKRNSWPKVRGVAMNPVEHPHGG 213          
BLAST of CF834719 vs. ExPASy Swiss-Prot
Match: RL8_XENLA (60S ribosomal protein L8 OS=Xenopus laevis GN=rpl8 PE=2 SV=3)

HSP 1 Score: 329.717 bits (844), Expect = 8.094e-90
Identity = 151/213 (70.89%), Postives = 181/213 (84.98%), Query Frame = 3
Query:   18 MGRVIRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGG 656
            MGRVIR QRKGAGSVFK+H  HRKG A+ R++DF ERNGY+KG+V +IIHDPGRGAPLA+V FR P+R+ K+ ELF+AAEG++TGQFVYCGKKA L +GNVLPV ++PEG +VC VE   GDRG LARASG+YA +ISHNP+   TRVKLPSG+KK+I S  RA++G VAGGGR +KP+LKAG AYHK++ KRNCWP+VRGVAMNPVEHP GG
Sbjct:    1 MGRVIRGQRKGAGSVFKAHVKHRKGAAKLRAIDFAERNGYIKGIVKDIIHDPGRGAPLAKVAFRDPYRFKKRTELFVAAEGIHTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCVEEKPGDRGKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANRAIVGVVAGGGRIDKPILKAGRAYHKYKAKRNCWPRVRGVAMNPVEHPFGG 213          
The following BLAST results are available for this feature:
BLAST of CF834719 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL83_ARATH2.669e-11790.6160S ribosomal protein L8-3 OS=Arabidopsis thaliana... [more]
RL81_ARATH3.486e-11791.5560S ribosomal protein L8-1 OS=Arabidopsis thaliana... [more]
RL8_SOLLC5.947e-11791.5560S ribosomal protein L8 OS=Solanum lycopersicum G... [more]
RL8_TOBAC3.608e-11489.2060S ribosomal protein L8 OS=Nicotiana tabacum GN=R... [more]
RL82_ARATH4.128e-11086.4560S ribosomal protein L8-2 OS=Arabidopsis thaliana... [more]
RL8_ANOGA4.292e-9172.7760S ribosomal protein L8 OS=Anopheles gambiae GN=R... [more]
RL8_SPOFR2.130e-9072.7760S ribosomal protein L8 OS=Spodoptera frugiperda ... [more]
RL8_MAMBR2.130e-9072.7760S ribosomal protein L8 OS=Mamestra brassicae GN=... [more]
RL8_DROME4.745e-9071.8360S ribosomal protein L8 OS=Drosophila melanogaste... [more]
RL8_XENLA8.094e-9070.8960S ribosomal protein L8 OS=Xenopus laevis GN=rpl8... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06A05_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834719 ID=CF834719; Name=CF834719; organism=Citrus sinensis; type=EST; length=656bp
CGGTGCCCTCTAAAGAAATGGGTCGTGTGATTCGCGCACAGCGTAAGGGT
GCAGGTTCGGTCTTCAAGTCCCACACCCACCACCGTAAGGGTCCGGCCCA
GTTCCGCAGCCTCGACTTCGGTGAGCGTAATGGTTACCTCAAGGGTGTCG
TCGCAGAGATTATTCACGATCCGGGTCGTGGTGCCCCGCTGGCCCGAGTC
ACCTTTCGTCACCCTTTTCGCTACATGAAACAAAAGGAGCTTTTCATTGC
CGCTGAGGGTATGTACACGGGTCAGTTCGTGTACTGCGGCAAGAAAGCCA
CTCTGATGGTTGGTAATGTGCTGCCCGTTAGATCTATCCCTGAAGGAGCT
GTTGTTTGCAACGTTGAGCATCATGTTGGTGATCGCGGTGTTTTGGCTAG
AGCTTCTGGTGATTATGCCGTTATCATCAGTCATAACCCCGATAATGACA
CCACCAGGGTCAAGCTTCCATCTGGTGCCAAAAAGATTATTCCAAGTGGC
TGCAGAGCGATGATTGGGCAGGTTGCCGGCGGAGGGAGGACTGAGAAGCC
CCTTCTCAAAGCTGGTAATGCATACCACAAATTCAGAGTGAAGCGAAACT
GCTGGCCTAAGGTGCGTGGTGTGGCCATGAACCCAGTGGAGCATCCTCAT
GGAGGA
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