CF834727

Overview
NameCF834727
Unique NameCF834727
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length660
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1525 contig Csv1_Contig1525:201..860. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF834727 vs. ExPASy Swiss-Prot
Match: RL112_ARATH (60S ribosomal protein L11-2 OS=Arabidopsis thaliana GN=RPL11B PE=2 SV=2)

HSP 1 Score: 239.195 bits (609), Expect = 1.433e-62
Identity = 120/139 (86.33%), Postives = 123/139 (88.49%), Query Frame = -3 
Query:  242 LSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKYEGVILNKSQNI 658
            LSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRG+KAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDF+VVLE                GIQHRVTK+DAMKWFQVKYEGVILNKSQNI
Sbjct:   42 LSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLERPGYRVARRRRCKTRVGIQHRVTKDDAMKWFQVKYEGVILNKSQNI 180
[Close]
BLAST of CF834727 vs. ExPASy Swiss-Prot
Match: RL111_ARATH (60S ribosomal protein L11-1 OS=Arabidopsis thaliana GN=RPL11A PE=1 SV=2)

HSP 1 Score: 239.195 bits (609), Expect = 1.433e-62
Identity = 120/139 (86.33%), Postives = 123/139 (88.49%), Query Frame = -3 
Query:  242 LSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKYEGVILNKSQNI 658
            LSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRG+KAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDF+VVLE                GIQHRVTK+DAMKWFQVKYEGVILNKSQNI
Sbjct:   42 LSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLERPGYRVARRRRCKARVGIQHRVTKDDAMKWFQVKYEGVILNKSQNI 180
[Close]
BLAST of CF834727 vs. ExPASy Swiss-Prot
Match: RL11_MEDSA (60S ribosomal protein L11 OS=Medicago sativa GN=RPL11 PE=2 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 1.871e-62
Identity = 121/139 (87.05%), Postives = 122/139 (87.77%), Query Frame = -3 
Query:  242 LSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKYEGVILNKSQNI 658
            LSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLE                GIQHRVTK+DAMKWFQVKYEGVILNKSQ I
Sbjct:   42 LSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLERPGYRVGRRRRCKARVGIQHRVTKDDAMKWFQVKYEGVILNKSQAI 180
[Close]
BLAST of CF834727 vs. ExPASy Swiss-Prot
Match: RL11_ORYSJ (60S ribosomal protein L11 OS=Oryza sativa subsp. japonica GN=RPL11 PE=2 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 1.751e-60
Identity = 116/137 (84.67%), Postives = 121/137 (88.32%), Query Frame = -3 
Query:  248 LSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKYEGVILNKSQ 658
            LSGQ+PVFSKARYTVRSFGIRRNEKIACYVTVRG+KAMQLLESGLKVKEYELLRRNFS+TGCFGFGIQEHIDLGIKYDPSTGIYGMDF+VVLE                GIQHRVTKEDAMKWFQVKYEGVILNK+Q
Sbjct:   42 LSGQSPVFSKARYTVRSFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSETGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLERAGYRVARRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKAQ 178
[Close]
BLAST of CF834727 vs. ExPASy Swiss-Prot
Match: RL11_ORYSI (60S ribosomal protein L11 OS=Oryza sativa subsp. indica GN=RPL11 PE=2 SV=2)

HSP 1 Score: 232.261 bits (591), Expect = 1.751e-60
Identity = 116/137 (84.67%), Postives = 121/137 (88.32%), Query Frame = -3 
Query:  248 LSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKYEGVILNKSQ 658
            LSGQ+PVFSKARYTVRSFGIRRNEKIACYVTVRG+KAMQLLESGLKVKEYELLRRNFS+TGCFGFGIQEHIDLGIKYDPSTGIYGMDF+VVLE                GIQHRVTKEDAMKWFQVKYEGVILNK+Q
Sbjct:   42 LSGQSPVFSKARYTVRSFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSETGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLERAGYRVARRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKAQ 178
[Close]
BLAST of CF834727 vs. ExPASy Swiss-Prot
Match: RL11_DROME (60S ribosomal protein L11 OS=Drosophila melanogaster GN=RpL11 PE=1 SV=2)

HSP 1 Score: 186.808 bits (473), Expect = 8.438e-47
Identity = 94/134 (70.15%), Postives = 104/134 (77.61%), Query Frame = -3 
Query:  257 LSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKYEGVILN 658
            L+GQ PVFSKARYTVRSFGIRRNEKIA + TVRG KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIKYDPS GIYG+DF+VVL                 G QHR+TKEDAMKWFQ KY+G+ILN
Sbjct:   48 LTGQQPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILERGLKVREYELRRENFSSTGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGYNVNHRKRKSGTVGFQHRLTKEDAMKWFQQKYDGIILN 181
[Close]
BLAST of CF834727 vs. ExPASy Swiss-Prot
Match: RL11_CHLRE (60S ribosomal protein L11 OS=Chlamydomonas reinhardtii GN=RPL11 PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 1.880e-46
Identity = 87/136 (63.97%), Postives = 109/136 (80.15%), Query Frame = -3 
Query:  251 LSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKYEGVILNKS 658
            L+ Q PV+ +AR+TVRSF IRRNEKI+CYVTVRG+KA  L++ GL VKE+EL+R+NFSDTG FGFGIQEHIDLG+KYDPSTGIYGMDF+V LE                G++H+VTKEDA+KWFQ +++GV+LNK+
Sbjct:   32 LTSQVPVYGRARFTVRSFAIRRNEKISCYVTVRGEKAYDLVKRGLAVKEFELIRKNFSDTGNFGFGIQEHIDLGLKYDPSTGIYGMDFYVCLERRGYRVARRRKQKAHVGVKHKVTKEDAIKWFQQEFDGVVLNKA 167
[Close]
BLAST of CF834727 vs. ExPASy Swiss-Prot
Match: RL11_RAT (60S ribosomal protein L11 OS=Rattus norvegicus GN=Rpl11 PE=1 SV=2)

HSP 1 Score: 182.956 bits (463), Expect = 1.218e-45
Identity = 90/133 (67.67%), Postives = 105/133 (78.95%), Query Frame = -3 
Query:  260 LSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKYEGVIL 658
            L+GQTPVFSKARYTVRSFGIRRNEKIA + TVRG KA ++LE GLKV+EYEL + NFSDTG FGFGIQEHIDLGIKYDPS GIYG+DF+VVL                 G +HR++KE+AM+WFQ KY+G+IL
Sbjct:   43 LTGQTPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFSIADKKRRTGCIGAKHRISKEEAMRWFQQKYDGIIL 175
[Close]
BLAST of CF834727 vs. ExPASy Swiss-Prot
Match: RL11_PONAB (60S ribosomal protein L11 OS=Pongo abelii GN=RPL11 PE=2 SV=3)

HSP 1 Score: 182.956 bits (463), Expect = 1.218e-45
Identity = 90/133 (67.67%), Postives = 105/133 (78.95%), Query Frame = -3 
Query:  260 LSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKYEGVIL 658
            L+GQTPVFSKARYTVRSFGIRRNEKIA + TVRG KA ++LE GLKV+EYEL + NFSDTG FGFGIQEHIDLGIKYDPS GIYG+DF+VVL                 G +HR++KE+AM+WFQ KY+G+IL
Sbjct:   43 LTGQTPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFSITDKKRRTGCIGAKHRISKEEAMRWFQQKYDGIIL 175
[Close]
BLAST of CF834727 vs. ExPASy Swiss-Prot
Match: RL11_MOUSE (60S ribosomal protein L11 OS=Mus musculus GN=Rpl11 PE=1 SV=4)

HSP 1 Score: 182.956 bits (463), Expect = 1.218e-45
Identity = 90/133 (67.67%), Postives = 105/133 (78.95%), Query Frame = -3 
Query:  260 LSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKYEGVIL 658
            L+GQTPVFSKARYTVRSFGIRRNEKIA + TVRG KA ++LE GLKV+EYEL + NFSDTG FGFGIQEHIDLGIKYDPS GIYG+DF+VVL                 G +HR++KE+AM+WFQ KY+G+IL
Sbjct:   43 LTGQTPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFSIADKKRRTGCIGAKHRISKEEAMRWFQQKYDGIIL 175
The following BLAST results are available for this feature:
BLAST of CF834727 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
RL112_ARATH1.433e-6286.3360S ribosomal protein L11-2 OS=Arabidopsis thalian... [more]
RL111_ARATH1.433e-6286.3360S ribosomal protein L11-1 OS=Arabidopsis thalian... [more]
RL11_MEDSA1.871e-6287.0560S ribosomal protein L11 OS=Medicago sativa GN=RP... [more]
RL11_ORYSJ1.751e-6084.6760S ribosomal protein L11 OS=Oryza sativa subsp. j... [more]
RL11_ORYSI1.751e-6084.6760S ribosomal protein L11 OS=Oryza sativa subsp. i... [more]
RL11_DROME8.438e-4770.1560S ribosomal protein L11 OS=Drosophila melanogast... [more]
RL11_CHLRE1.880e-4663.9760S ribosomal protein L11 OS=Chlamydomonas reinhar... [more]
RL11_RAT1.218e-4567.6760S ribosomal protein L11 OS=Rattus norvegicus GN=... [more]
RL11_PONAB1.218e-4567.6760S ribosomal protein L11 OS=Pongo abelii GN=RPL11... [more]
RL11_MOUSE1.218e-4567.6760S ribosomal protein L11 OS=Mus musculus GN=Rpl11... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06A11_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834727 ID=CF834727; Name=CF834727; organism=Citrus sinensis; type=EST; length=660bp
TTTTTTTTTTTAGAAACATGAATAATCACTTGAGAACAATAAAGGCCATA
TTCAGTATCTGCGATTTTTAGTGCAGCCCAGCCATAATCTTGATAATAAA
ATTTAAATAGACAAATAACAAAATATCTTGAACTACCAAAAGCATCTAAC
TCAGGTTTGCAAAACGCCAAGTAATAGCCAGTGTCTACAAACATCAACAC
TATAAATGCAAAATCGTCATCACACAAAGGGCTTAAGCACCAATATTCTG
GGACTTGTTGAGGATCACACCTTCGTATTTGACCTGGAACCATTTCATTG
CATCTTCCTTCGTGACACGGTGCTGAATCCCAACACGAGACTTGCACCTA
CGGCGTCGACCTACACGATAACCCGGGCGCTCCAGAACCACAAAGAAATC
CATACCATAAATTCCAGTGGAAGGATCATACTTGATTCCAAGATCAATAT
GCTCTTGAATACCAAAGCCAAAACAGCCAGTGTCACTGAAATTCCGACGC
AGAAGCTCATATTCCTTCACCTTCAATCCACTCTCCAAAAGCTGCATTGC
CTTGTCACCTCTAACAGTCACATAGCATGCAATCTTCTCATTACGTCTGA
TCCCAAAAGACCGAACAGTGTACCTGGCCTTGGAGAAAACAGGTGTCTGT
CCACTGAGTT
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