CF834728

Overview
NameCF834728
Unique NameCF834728
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length802
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1525 contig Csv1_Contig1525:65..866. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF834728 vs. ExPASy Swiss-Prot
Match: RL11_MEDSA (60S ribosomal protein L11 OS=Medicago sativa GN=RPL11 PE=2 SV=1)

HSP 1 Score: 310.071 bits (793), Expect = 9.397e-84
Identity = 159/180 (88.33%), Postives = 161/180 (89.44%), Query Frame = 1 
Query:   16 MSSEKKLSNPMREIMVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKWFQVKYEGVILNKSQNI 555
            M+SEKKLSNPMREI VQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLE                 IQHRVTK+DAMKWFQVKYEGVILNKSQ I
Sbjct:    1 MASEKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLERPGYRVGRRRRCKARVGIQHRVTKDDAMKWFQVKYEGVILNKSQAI 180
[Close]
BLAST of CF834728 vs. ExPASy Swiss-Prot
Match: RL112_ARATH (60S ribosomal protein L11-2 OS=Arabidopsis thaliana GN=RPL11B PE=2 SV=2)

HSP 1 Score: 308.145 bits (788), Expect = 3.571e-83
Identity = 156/180 (86.67%), Postives = 162/180 (90.00%), Query Frame = 1 
Query:   16 MSSEKKLSNPMREIMVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKWFQVKYEGVILNKSQNI 555
            M+SEKKLSNPMR+I VQKLVLNISVGESGDRLTRA+KVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRG+KAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDF+VVLE                 IQHRVTK+DAMKWFQVKYEGVILNKSQNI
Sbjct:    1 MASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLERPGYRVARRRRCKTRVGIQHRVTKDDAMKWFQVKYEGVILNKSQNI 180
[Close]
BLAST of CF834728 vs. ExPASy Swiss-Prot
Match: RL111_ARATH (60S ribosomal protein L11-1 OS=Arabidopsis thaliana GN=RPL11A PE=1 SV=2)

HSP 1 Score: 308.145 bits (788), Expect = 3.571e-83
Identity = 156/180 (86.67%), Postives = 162/180 (90.00%), Query Frame = 1 
Query:   16 MSSEKKLSNPMREIMVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKWFQVKYEGVILNKSQNI 555
            M+SEKKLSNPMR+I VQKLVLNISVGESGDRLTRA+KVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRG+KAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDF+VVLE                 IQHRVTK+DAMKWFQVKYEGVILNKSQNI
Sbjct:    1 MASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLERPGYRVARRRRCKARVGIQHRVTKDDAMKWFQVKYEGVILNKSQNI 180
[Close]
BLAST of CF834728 vs. ExPASy Swiss-Prot
Match: RL11_ORYSJ (60S ribosomal protein L11 OS=Oryza sativa subsp. japonica GN=RPL11 PE=2 SV=1)

HSP 1 Score: 300.056 bits (767), Expect = 9.725e-81
Identity = 152/178 (85.39%), Postives = 159/178 (89.33%), Query Frame = 1 
Query:   16 MSSEKKLSNPMREIMVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKWFQVKYEGVILNKSQ 549
            M+SEKK SNPMREI VQKLVLNISVGESGDRLTRA+KVLEQLSGQ+PVFSKARYTVRSFGIRRNEKIACYVTVRG+KAMQLLESGLKVKEYELLRRNFS+TGCFGFGIQEHIDLGIKYDPSTGIYGMDF+VVLE                 IQHRVTKEDAMKWFQVKYEGVILNK+Q
Sbjct:    1 MASEKKQSNPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQSPVFSKARYTVRSFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSETGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLERAGYRVARRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKAQ 178
[Close]
BLAST of CF834728 vs. ExPASy Swiss-Prot
Match: RL11_ORYSI (60S ribosomal protein L11 OS=Oryza sativa subsp. indica GN=RPL11 PE=2 SV=2)

HSP 1 Score: 300.056 bits (767), Expect = 9.725e-81
Identity = 152/178 (85.39%), Postives = 159/178 (89.33%), Query Frame = 1 
Query:   16 MSSEKKLSNPMREIMVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKWFQVKYEGVILNKSQ 549
            M+SEKK SNPMREI VQKLVLNISVGESGDRLTRA+KVLEQLSGQ+PVFSKARYTVRSFGIRRNEKIACYVTVRG+KAMQLLESGLKVKEYELLRRNFS+TGCFGFGIQEHIDLGIKYDPSTGIYGMDF+VVLE                 IQHRVTKEDAMKWFQVKYEGVILNK+Q
Sbjct:    1 MASEKKQSNPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQSPVFSKARYTVRSFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSETGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLERAGYRVARRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKAQ 178
[Close]
BLAST of CF834728 vs. ExPASy Swiss-Prot
Match: RL11_DROME (60S ribosomal protein L11 OS=Drosophila melanogaster GN=RpL11 PE=1 SV=2)

HSP 1 Score: 237.654 bits (605), Expect = 5.927e-62
Identity = 120/177 (67.80%), Postives = 135/177 (76.27%), Query Frame = 1 
Query:   10 TRMSSEKKLSNPMREIMVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKWFQVKYEGVILN 540
            T+        NPMR++ ++KL LNI VGESGDRLTRAAKVLEQL+GQ PVFSKARYTVRSFGIRRNEKIA + TVRG KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIKYDPS GIYG+DF+VVL                   QHR+TKEDAMKWFQ KY+G+ILN
Sbjct:    5 TKKIKRDPAKNPMRDLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILERGLKVREYELRRENFSSTGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGYNVNHRKRKSGTVGFQHRLTKEDAMKWFQQKYDGIILN 181
[Close]
BLAST of CF834728 vs. ExPASy Swiss-Prot
Match: RL11_SCHPO (60S ribosomal protein L11 OS=Schizosaccharomyces pombe GN=rpl11a PE=1 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 2.252e-61
Identity = 115/172 (66.86%), Postives = 134/172 (77.91%), Query Frame = 1 
Query:   28 KKLSNPMREIMVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKWFQVKYEGVILNK 543
            +K  NPM+E+ + KLVLNIS+GESGDRLTRAAKVLEQLSGQTPVFSKARYT+R FGIRRNEKIAC+VTVRG KA ++LE GLKVKEYEL +RNFS TG FGFGIQEHIDLGIKYDPS GIYGMDF+VV++                   H++  ED + WF+ KY+ V+L K
Sbjct:    3 EKAQNPMKELRISKLVLNISLGESGDRLTRAAKVLEQLSGQTPVFSKARYTIRRFGIRRNEKIACHVTVRGPKAEEILERGLKVKEYELKKRNFSATGNFGFGIQEHIDLGIKYDPSIGIYGMDFYVVMDRPGMRVARRKAQRGRVGYTHKINAEDTINWFKQKYDAVVLGK 174
[Close]
BLAST of CF834728 vs. ExPASy Swiss-Prot
Match: RL11_RAT (60S ribosomal protein L11 OS=Rattus norvegicus GN=Rpl11 PE=1 SV=2)

HSP 1 Score: 234.958 bits (598), Expect = 3.842e-61
Identity = 116/166 (69.88%), Postives = 134/166 (80.72%), Query Frame = 1 
Query:   40 NPMREIMVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKWFQVKYEGVIL 537
            NPMRE+ ++KL LNI VGESGDRLTRAAKVLEQL+GQTPVFSKARYTVRSFGIRRNEKIA + TVRG KA ++LE GLKV+EYEL + NFSDTG FGFGIQEHIDLGIKYDPS GIYG+DF+VVL                   +HR++KE+AM+WFQ KY+G+IL
Sbjct:   10 NPMRELRIRKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFSIADKKRRTGCIGAKHRISKEEAMRWFQQKYDGIIL 175
[Close]
BLAST of CF834728 vs. ExPASy Swiss-Prot
Match: RL11_PONAB (60S ribosomal protein L11 OS=Pongo abelii GN=RPL11 PE=2 SV=3)

HSP 1 Score: 234.958 bits (598), Expect = 3.842e-61
Identity = 116/166 (69.88%), Postives = 134/166 (80.72%), Query Frame = 1 
Query:   40 NPMREIMVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKWFQVKYEGVIL 537
            NPMRE+ ++KL LNI VGESGDRLTRAAKVLEQL+GQTPVFSKARYTVRSFGIRRNEKIA + TVRG KA ++LE GLKV+EYEL + NFSDTG FGFGIQEHIDLGIKYDPS GIYG+DF+VVL                   +HR++KE+AM+WFQ KY+G+IL
Sbjct:   10 NPMRELRIRKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFSITDKKRRTGCIGAKHRISKEEAMRWFQQKYDGIIL 175
[Close]
BLAST of CF834728 vs. ExPASy Swiss-Prot
Match: RL11_MOUSE (60S ribosomal protein L11 OS=Mus musculus GN=Rpl11 PE=1 SV=4)

HSP 1 Score: 234.958 bits (598), Expect = 3.842e-61
Identity = 116/166 (69.88%), Postives = 134/166 (80.72%), Query Frame = 1 
Query:   40 NPMREIMVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKWFQVKYEGVIL 537
            NPMRE+ ++KL LNI VGESGDRLTRAAKVLEQL+GQTPVFSKARYTVRSFGIRRNEKIA + TVRG KA ++LE GLKV+EYEL + NFSDTG FGFGIQEHIDLGIKYDPS GIYG+DF+VVL                   +HR++KE+AM+WFQ KY+G+IL
Sbjct:   10 NPMRELRIRKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFSIADKKRRTGCIGAKHRISKEEAMRWFQQKYDGIIL 175
The following BLAST results are available for this feature:
BLAST of CF834728 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
RL11_MEDSA9.397e-8488.3360S ribosomal protein L11 OS=Medicago sativa GN=RP... [more]
RL112_ARATH3.571e-8386.6760S ribosomal protein L11-2 OS=Arabidopsis thalian... [more]
RL111_ARATH3.571e-8386.6760S ribosomal protein L11-1 OS=Arabidopsis thalian... [more]
RL11_ORYSJ9.725e-8185.3960S ribosomal protein L11 OS=Oryza sativa subsp. j... [more]
RL11_ORYSI9.725e-8185.3960S ribosomal protein L11 OS=Oryza sativa subsp. i... [more]
RL11_DROME5.927e-6267.8060S ribosomal protein L11 OS=Drosophila melanogast... [more]
RL11_SCHPO2.252e-6166.8660S ribosomal protein L11 OS=Schizosaccharomyces p... [more]
RL11_RAT3.842e-6169.8860S ribosomal protein L11 OS=Rattus norvegicus GN=... [more]
RL11_PONAB3.842e-6169.8860S ribosomal protein L11 OS=Pongo abelii GN=RPL11... [more]
RL11_MOUSE3.842e-6169.8860S ribosomal protein L11 OS=Mus musculus GN=Rpl11... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06A11_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834728 ID=CF834728; Name=CF834728; organism=Citrus sinensis; type=EST; length=802bp
CATCAGCAAACCCGCATGTCTTCAGAGAAGAAACTTTCGAACCCCATGAG
GGAAATTATGGTTCAGAAGCTTGTGCTCAACATCTCCGTTGGTGAAAGTG
GAGATCGTCTCACCAGAGCCGCTAAGGTGCTGGAGCAACTCAGTGGACAG
ACACCTGTTTTCTCCAAGGCCAGGTACACTGTTCGGTCTTTTGGGATCAG
ACGTAATGAGAAGATTGCATGCTATGTGACTGTTAGAGGTGACAAGGCAA
TGCAGCTTTTGGAGAGTGGATTGAAGGTGAAGGAATATGAGCTTCTGCGT
CGGAATTTCAGTGACACTGGCTGTTTTGGCTTTGGTATTCAAGAGCATAT
TGATCTTGGAATCAAGTATGATCCTTCCACTGGAATTTATGGTATGGATT
TCTTTGTGGTTCTGGAGCGCCCGGGTTATCGTGTAGGTCGACGCCGTAGG
TGCAAGTCTCGTGTTGGGATTCAGCACCGTGTCACGAAGGAAGATGCAAT
GAAATGGTTCCAGGTCAAATACGAAGGTGTGATCCTCAACAAGTCCCAGA
ATATTGGTGCTTAAGCCCTTTGTGTGATGACGATTTTGCATTTATAGTGT
TGATGTTTGTAGACACTGGCTATTACTTGGCGTTTTGCAAACCTGAGTTA
GATGCTTTTGGTAGTTCAAGATATTTTGTTATTTGTCTATTTAAATTTTA
TTATCAAGATTATGGGCTAGCTGCACTAAAAATCGCAGATACTGAATATG
GACACTGTTTTTTCTCAAGTGATTATTCATGTTTCTAAAAAAAAAAAAAA
AA
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