CF834730

Overview
NameCF834730
Unique NameCF834730
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length683
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6272 contig Csv1_Contig6272:321..1003. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834730 vs. ExPASy Swiss-Prot
Match: PR2E1_ORYSJ (Peroxiredoxin-2E-1, chloroplastic OS=Oryza sativa subsp. japonica GN=PRXIIE-1 PE=2 SV=1)

HSP 1 Score: 259.225 bits (661), Expect = 1.439e-68
Identity = 128/162 (79.01%), Postives = 146/162 (90.12%), Query Frame = -2
Query:  197 ISVGDKLPDATLSYFDSA-GELQTITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDTVACISVNDAFVMKAWKENLGINDEVLLLSDGNGVFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLNLEEGGAFTFSGAEDMLKAL 679
            I+VGDKLPDATLSYFDS  GEL+T+TV DLT+ KK +LFAVPGAFTPTC+QKH+PGFV K+ EL++KGVD VAC+SVNDAFVM+AWKE+LG+ DEVLLLSDGNG   +A+G ELDLSDKP GLGVRSRRYALLAE+GVVKVLNLEEGGAFT S AE+MLKAL
Sbjct:   71 IAVGDKLPDATLSYFDSPDGELKTVTVRDLTAGKKVVLFAVPGAFTPTCTQKHVPGFVAKAGELRAKGVDAVACVSVNDAFVMRAWKESLGVGDEVLLLSDGNGELARAMGVELDLSDKPAGLGVRSRRYALLAEDGVVKVLNLEEGGAFTTSSAEEMLKAL 232          
BLAST of CF834730 vs. ExPASy Swiss-Prot
Match: PRX2E_ARATH (Peroxiredoxin-2E, chloroplastic OS=Arabidopsis thaliana GN=PRXIIE PE=1 SV=2)

HSP 1 Score: 255.758 bits (652), Expect = 1.591e-67
Identity = 125/163 (76.69%), Postives = 147/163 (90.18%), Query Frame = -2
Query:  197 AISVGDKLPDATLSYFD-SAGELQTITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDTVACISVNDAFVMKAWKENLGINDEVLLLSDGNGVFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLNLEEGGAFTFSGAEDMLKAL 682
            +ISVGDKLPD+TLSY D S G+++T+TVS LT+ KK ILFAVPGAFTPTCSQKH+PGFV K+ EL+SKG+D +ACISVNDAFVM+AW+++LGINDEV+LLSDGNG FT  +G ELDL DKP+GLGVRSRRYA+LA++GVVKVLNLEEGGAFT S AEDMLKAL
Sbjct:   72 SISVGDKLPDSTLSYLDPSTGDVKTVTVSSLTAGKKTILFAVPGAFTPTCSQKHVPGFVSKAGELRSKGIDVIACISVNDAFVMEAWRKDLGINDEVMLLSDGNGEFTGKLGVELDLRDKPVGLGVRSRRYAILADDGVVKVLNLEEGGAFTNSSAEDMLKAL 234          
BLAST of CF834730 vs. ExPASy Swiss-Prot
Match: PR2E2_ORYSJ (Peroxiredoxin-2E-2, chloroplastic OS=Oryza sativa subsp. japonica GN=PRXIIE-2 PE=1 SV=1)

HSP 1 Score: 254.218 bits (648), Expect = 4.628e-67
Identity = 126/163 (77.30%), Postives = 149/163 (91.41%), Query Frame = -2
Query:  197 ISVGDKLPDATLSYFDSA-GELQTITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDTVACISVNDAFVMKAWKENLGIND-EVLLLSDGNGVFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLNLEEGGAFTFSGAEDMLKAL 679
            I+VGDKLPDATLSYFD A GEL+T+TV++LT+ +KA+LFAVPGAFTPTCSQKHLPGF+EK+ EL +KGVD +AC+SVNDAFVM+AWKE+LG+ D +VLLLSDGN   T+A+G E+DLSDKPMGLGVRSRRYALLA++GVVKVLNLEEGGAFT S AE+MLKAL
Sbjct:   63 IAVGDKLPDATLSYFDPADGELKTVTVAELTAGRKAVLFAVPGAFTPTCSQKHLPGFIEKAGELHAKGVDAIACVSVNDAFVMRAWKESLGLGDADVLLLSDGNLELTRALGVEMDLSDKPMGLGVRSRRYALLADDGVVKVLNLEEGGAFTTSSAEEMLKAL 225          
BLAST of CF834730 vs. ExPASy Swiss-Prot
Match: PRX2B_ARATH (Peroxiredoxin-2B OS=Arabidopsis thaliana GN=PRXIIB PE=1 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 8.208e-48
Identity = 95/161 (59.01%), Postives = 118/161 (73.29%), Query Frame = -2
Query:  197 ISVGDKLPDATLSYFDSAGELQTITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDTVACISVNDAFVMKAWKENLGINDEVLLLSDGNGVFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLNLEEGGAFTFSGAEDMLKAL 679
            I+VGD +PD T+S+FD   +LQT +V  L + KK ILF VPGAFTPTCS KH+PGF+EK+ ELKSKGVD + C SVND FVMKAW +    N  V  ++DG+G +T  +G ELDL DK  GLGVRSRR+ALL ++  V V N+E GG FT S A+D+LKAL
Sbjct:    4 IAVGDVVPDGTISFFDENDQLQTASVHSLAAGKKVILFGVPGAFTPTCSMKHVPGFIEKAEELKSKGVDEIICFSVNDPFVMKAWGKTYPENKHVKFVADGSGEYTHLLGLELDLKDK--GLGVRSRRFALLLDDLKVTVANVESGGEFTVSSADDILKAL 162          
BLAST of CF834730 vs. ExPASy Swiss-Prot
Match: PRX2C_ORYSJ (Peroxiredoxin-2C OS=Oryza sativa subsp. japonica GN=PRXIIC PE=1 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.072e-47
Identity = 92/161 (57.14%), Postives = 121/161 (75.16%), Query Frame = -2
Query:  197 ISVGDKLPDATLSYFDSAGELQTITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDTVACISVNDAFVMKAWKENLGINDEVLLLSDGNGVFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLNLEEGGAFTFSGAEDMLKAL 679
            ++VGD LPD  L +FD   +LQ ++V  L + KK +LF VPGAFTPTCS +H+PGF+ ++ +LK+KGVD +  +SVND FVMKAW ++   N  V  L+DG G +TKA+G ELDLS+K  GLG+RSRR+ALLA+N  V V N+EEGG FT SGAE++LKAL
Sbjct:    4 VAVGDTLPDGQLGWFDGEDKLQQVSVHGLAAGKKVVLFGVPGAFTPTCSNQHVPGFINQAEQLKAKGVDDILLVSVNDPFVMKAWAKSYPENKHVKFLADGLGTYTKALGLELDLSEK--GLGIRSRRFALLADNLKVTVANIEEGGQFTISGAEEILKAL 162          
BLAST of CF834730 vs. ExPASy Swiss-Prot
Match: PRX2D_ARATH (Peroxiredoxin-2D OS=Arabidopsis thaliana GN=PRXIID PE=1 SV=2)

HSP 1 Score: 188.734 bits (478), Expect = 2.388e-47
Identity = 92/161 (57.14%), Postives = 117/161 (72.67%), Query Frame = -2
Query:  197 ISVGDKLPDATLSYFDSAGELQTITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDTVACISVNDAFVMKAWKENLGINDEVLLLSDGNGVFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLNLEEGGAFTFSGAEDMLKAL 679
            I+VGD +PD T+S+FD   +LQT++V  + + KK ILF VPGAFTPTCS  H+PGF+ K+ ELKSKG+D + C SVND FVMKAW +    N  V  ++DG+G +T  +G ELDL DK  GLG+RSRR+ALL +N  V V N+E GG FT S AED+LKAL
Sbjct:    4 ITVGDVVPDGTISFFDENDQLQTVSVHSIAAGKKVILFGVPGAFTPTCSMSHVPGFIGKAEELKSKGIDEIICFSVNDPFVMKAWGKTYQENKHVKFVADGSGEYTHLLGLELDLKDK--GLGIRSRRFALLLDNLKVTVANVENGGEFTVSSAEDILKAL 162          
BLAST of CF834730 vs. ExPASy Swiss-Prot
Match: PRX2C_ARATH (Peroxiredoxin-2C OS=Arabidopsis thaliana GN=PRXIIC PE=1 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 2.388e-47
Identity = 92/161 (57.14%), Postives = 117/161 (72.67%), Query Frame = -2
Query:  197 ISVGDKLPDATLSYFDSAGELQTITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDTVACISVNDAFVMKAWKENLGINDEVLLLSDGNGVFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLNLEEGGAFTFSGAEDMLKAL 679
            I+VGD +PD T+S+FD   +LQT++V  + + KK ILF VPGAFTPTCS  H+PGF+ K+ ELKSKG+D + C SVND FVMKAW +    N  V  ++DG+G +T  +G ELDL DK  GLG+RSRR+ALL +N  V V N+E GG FT S AED+LKAL
Sbjct:    4 ITVGDVVPDGTISFFDENDQLQTVSVHSIAAGKKVILFGVPGAFTPTCSMSHVPGFIGKAEELKSKGIDEIICFSVNDPFVMKAWGKTYPENKHVKFVADGSGEYTHLLGLELDLKDK--GLGIRSRRFALLLDNLKVTVANVESGGEFTVSSAEDILKAL 162          
BLAST of CF834730 vs. ExPASy Swiss-Prot
Match: PRX2A_ARATH (Peroxiredoxin-2A OS=Arabidopsis thaliana GN=PRXIIA PE=1 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 9.741e-33
Identity = 72/147 (48.98%), Postives = 99/147 (67.35%), Query Frame = -2
Query:  239 ISVGDKLPDATLSYFDSAGELQTITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDTVACISVNDAFVMKAWKENLGINDEVLLLSDGNGVFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLNLEEGG 679
            I VGD +PD ++S+FD   +LQT++V  L + KK ILF VPGAF PTCS  H+ GF+EK+ ELKS GVD + C+S +D F++ A  E    N  V  + DG+G + + +G EL++ DK  GLGVRSR +ALL +N  V V+N+  GG
Sbjct:    4 IDVGDFVPDGSISFFDDDDQLQTVSVHSLAAGKKVILFGVPGAFPPTCSMNHVNGFIEKAEELKSNGVDEIICLSGDDPFMITACSE----NKHVKFVEDGSGEYIQLLGLELEVKDK--GLGVRSRGFALLLDNLKVIVVNVGSGG 144          
BLAST of CF834730 vs. ExPASy Swiss-Prot
Match: PRDX5_MOUSE (Peroxiredoxin-5, mitochondrial OS=Mus musculus GN=Prdx5 PE=1 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 6.761e-26
Identity = 66/162 (40.74%), Postives = 96/162 (59.26%), Query Frame = -2
Query:  197 ISVGDKLPDATLSYFDSAGELQTITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDTVACISVNDAFVMKAWKENLGINDEVLLLSDGNGVFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLNLE-EGGAFTFSGAEDMLKAL 679
            I VGD +P   +   +     + + +++L   KK +LF VPGAFTP CS+ HLPGFVE++  LK+KG   VAC+SVND FV++ W        +V LL+D  G F KA    LD S   +    R +R++++ +NG+VK LN+E +G   T S A ++L  L
Sbjct:   52 IKVGDAIPSVEVFEGEPG---KKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAGALKAKGAQVVACLSVNDVFVIEEWGRAHQAEGKVRLLADPTGAFGKATDLLLDDSLVSLFGNRRLKRFSMVIDNGIVKALNVEPDGTGLTCSLAPNILSQL 210          
BLAST of CF834730 vs. ExPASy Swiss-Prot
Match: PRX5_HAEIN (Hybrid peroxiredoxin hyPrx5 OS=Haemophilus influenzae GN=HI0572 PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.506e-25
Identity = 67/161 (41.61%), Postives = 94/161 (58.39%), Query Frame = -2
Query:  197 GDKLPDATLSYFDSAGELQTITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDTVACISVNDAFVMKAWKENLGINDEVLLLSDGNGVFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLNL---EEGGAFTFSGAEDMLKAL 670
            G K+P  T        +   +T S+L  NK  I+F++PGAFTPTCS  HLP + E +   K  GVD +  +SVND FVM AWKE+   ++ +  + DGNG FT+ +G  +   D  +G G RS RY++L +NGVV+ + +   E G  F  S A+ MLK L
Sbjct:    6 GKKVPQVTFRT-RQGDKWVDVTTSELFDNKTVIVFSLPGAFTPTCSSSHLPRYNELAPVFKKYGVDDILVVSVNDTFVMNAWKED-EKSENISFIPDGNGEFTEGMGMLVGKED--LGFGKRSWRYSMLVKNGVVEKMFIEPNEPGDPFKVSDADTMLKYL 162          
The following BLAST results are available for this feature:
BLAST of CF834730 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
PR2E1_ORYSJ1.439e-6879.01Peroxiredoxin-2E-1, chloroplastic OS=Oryza sativa ... [more]
PRX2E_ARATH1.591e-6776.69Peroxiredoxin-2E, chloroplastic OS=Arabidopsis tha... [more]
PR2E2_ORYSJ4.628e-6777.30Peroxiredoxin-2E-2, chloroplastic OS=Oryza sativa ... [more]
PRX2B_ARATH8.208e-4859.01Peroxiredoxin-2B OS=Arabidopsis thaliana GN=PRXIIB... [more]
PRX2C_ORYSJ1.072e-4757.14Peroxiredoxin-2C OS=Oryza sativa subsp. japonica G... [more]
PRX2D_ARATH2.388e-4757.14Peroxiredoxin-2D OS=Arabidopsis thaliana GN=PRXIID... [more]
PRX2C_ARATH2.388e-4757.14Peroxiredoxin-2C OS=Arabidopsis thaliana GN=PRXIIC... [more]
PRX2A_ARATH9.741e-3348.98Peroxiredoxin-2A OS=Arabidopsis thaliana GN=PRXIIA... [more]
PRDX5_MOUSE6.761e-2640.74Peroxiredoxin-5, mitochondrial OS=Mus musculus GN=... [more]
PRX5_HAEIN1.506e-2541.61Hybrid peroxiredoxin hyPrx5 OS=Haemophilus influen... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06A12_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834730 ID=CF834730; Name=CF834730; organism=Citrus sinensis; type=EST; length=683bp
TTTTTTTTTTTTTTTTTGGGATAAAAAATTAAATTGAGCAGGATAAAAAT
CCAAACAGCTCTGAAAATTCAAATGCACAAGGAGAAGTAGAAATTTCAAA
ACCCGAAACACGAGTTTTTAGTAACAAAGACACATTATTCAACACTCTAA
TGAAAGTTAAATTATTAAAAAAAAAAAAACTATCTCACCGAAATCACAGA
GCTTTGAGCATGTCCTCAGCTCCGCTGAAAGTAAAGGCGCCGCCCTCCTC
CAAATTGAGCACCTTAACGACGCCGTTTTCTGCCAAAAGGGCGTACCTCC
TGGACCTAACTCCCAATCCCATGGGCTTGTCACTCAAGTCGAGCTCACAG
CCAATAGCCTTAGTGAACACCCCGTTCCCATCAGACAACAAAAGCACTTC
ATCGTTGATTCCAAGATTCTCCTTCCAGGCCTTCATAACGAAGGCGTCGT
TCACGGAAATGCAGGCGACAGTGTCGACGCCTTTGGATTTCAACTCGGCG
GATTTCTCGACGAAGCCCGGGAGGTGTTTTTGGGAGCAGGTGGGGGTGAA
GGCGCCGGGGACGGCGAATAGGATTGCTTTTTTATTGGAGGTGAGGTCGG
AGACGGTGATGGTCTGGAGCTCGCCAGCGGAGTCGAAGTAGGAGAGGGTG
GCGTCGGGGAGCTTGTCGCCCACGGAAATGGCG
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